Gchil3589.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3589.t1
Unique NameGchil3589.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length208
Homology
BLAST of Gchil3589.t1 vs. uniprot
Match: R7QRD9_CHOCR (Retrotransposon protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRD9_CHOCR)

HSP 1 Score: 236 bits (602), Expect = 1.130e-74
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 0
Query:    1 MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPIG 206
            M FGL NAPATFQR +DILL+ ++WK  LVY +DI++FS+ ++E+ +HV+ V+K L+DAG++LKL++C FF +SV YL H IRPG L+  E    ++K+A+  T QTELRSFLG CNVYRRFVPNF   A PLN LL KG+P +LE F   Q+ AF  L  A  SPPIL LP   LP  +DTDA + QV CALF T  +G RHP G
Sbjct:   76 MPFGLCNAPATFQRTLDILLSGYRWKSCLVYFDDIIIFSNFIEEHSTHVQQVLKVLQDAGLSLKLEKCNFFAESVDYLGHVIRPGLLAVAEKNTDAIKKAQERTTQTELRSFLGMCNVYRRFVPNFARTAAPLNVLLAKGKPFQLEKFSVEQSKAFGLLKTAVISPPILKLPRSNLPISVDTDACERQVGCALFQTYPDGTRHPAG 281          
BLAST of Gchil3589.t1 vs. uniprot
Match: UPI001E1E1407 (uncharacterized protein LOC123543642 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1407)

HSP 1 Score: 206 bits (524), Expect = 5.790e-58
Identity = 108/206 (52.43%), Postives = 133/206 (64.56%), Query Frame = 0
Query:    1 MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPIG 206
            M FGL NAPATFQR +DI L+   WK  LVYL+DI+VFS    E+++H+  V+  L  AG+TL LK+C FF ++V YL H IRPG+LS  +    +LK  K  T QTELRSFLG CNVYRRFV  F  +A PLN LLRKG   +L P    Q SAF +L +A  +PPILALP       +DTDAS  Q+ C L  T  +G + PIG
Sbjct:  100 MPFGLRNAPATFQRFVDITLSGLTWKTCLVYLDDIIVFSKTPTEHMAHLDAVLHRLYRAGLTLNLKKCHFFKETVDYLGHVIRPGQLSVAKKNTAALKVTKHPTTQTELRSFLGLCNVYRRFVKGFAKIAAPLNLLLRKGETPQLGPLSAEQVSAFETLRDALLNPPILALPRTEGALTLDTDASDHQLGCCLLQTQPDGSQRPIG 305          
BLAST of Gchil3589.t1 vs. uniprot
Match: R7QFB9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFB9_CHOCR)

HSP 1 Score: 199 bits (505), Expect = 7.770e-56
Identity = 97/205 (47.32%), Postives = 138/205 (67.32%), Query Frame = 0
Query:    1 MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPI 205
            M  GLTNAPATFQRA+DILL+ F+WK  LVY   I++FS + +E++ HV +++  L  A + LKL++C+FF + +KYL   +RPG L  D  R  +L++ +    QT+LRSFLG CNVYRRFVP++  +  PLN+LL+KG+ ++LE   +     F+ L +A   PP+LALP   LP+ +DTDAS  Q+  ALF T  + +R PI
Sbjct:    1 MPLGLTNAPATFQRAMDILLSPFRWKCCLVY---IIIFSKSWEEHVVHVDEILSVLEKACVKLKLRKCEFFVEKIKYLGRVVRPGTLEVDAARTAALEQVRYPQTQTQLRSFLGLCNVYRRFVPHYAKIEHPLNQLLKKGQLLQLEGLDEPCEKDFHKLKDAILEPPVLALPKKDLPYSVDTDASDYQIGAALFQTHPDAQRKPI 202          
BLAST of Gchil3589.t1 vs. uniprot
Match: R7QRS9_CHOCR (RT_RNaseH_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRS9_CHOCR)

HSP 1 Score: 162 bits (409), Expect = 5.470e-47
Identity = 75/159 (47.17%), Postives = 107/159 (67.30%), Query Frame = 0
Query:   48 HVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPIG 206
            HV +++  L  AG+ LKL++C+FF + +KYL H +RPG L  D  R+ +L++ K    QT+LRSFLG CNVYRRFVP++  +A PLN+LL+KG+PV+LE F +    AF++L EA  +PP++ALP   LP+ +DTDAS  Q+   LF        +P G
Sbjct:    3 HVDEIMSVLEKAGVKLKLRKCEFFVEKIKYLGHVVRPGTLEVDAARIAALEQVKYPQTQTQLRSFLGLCNVYRRFVPHYAKIAHPLNQLLKKGQPVQLEGFDEPCKKAFHNLKEAILAPPVVALPKKDLPYSVDTDASDYQIGATLFQRIRMHNENPSG 161          
BLAST of Gchil3589.t1 vs. uniprot
Match: R7Q5U0_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5U0_CHOCR)

HSP 1 Score: 168 bits (426), Expect = 5.200e-46
Identity = 84/148 (56.76%), Postives = 104/148 (70.27%), Query Frame = 0
Query:   59 AGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPIG 206
            A   + L++C FFT  V YL H IRPG LS DEV  ++L+E    T QTELRSFLG CNVYRRFVPN+   A PLN+LL+KG+P +LEPF +T+  AF++L EA  SPPILALP  G P+ +DTDAS  QV  ALF +  +G+R  IG
Sbjct:   43 ASPVVLLEKCSFFTQEVHYLGHVIRPGTLSIDEVSTRALREIAIPTTQTELRSFLGLCNVYRRFVPNYAHKAAPLNQLLKKGQPAKLEPFDETEIKAFDTLREAVISPPILALPKAGFPYSMDTDASDYQVGTALFQSHEDGQRKHIG 190          
BLAST of Gchil3589.t1 vs. uniprot
Match: R7QKK5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKK5_CHOCR)

HSP 1 Score: 169 bits (427), Expect = 3.560e-45
Identity = 93/206 (45.15%), Postives = 113/206 (54.85%), Query Frame = 0
Query:    1 MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPIG 206
            M FGL NAPATFQRA+DI+L+R KW+  LVYL+D++                               C FF  SV YL H IRPGRL  +   V +++ A+  TNQTELRSFLG CNVYRRFV  F  +A PLN+   K +  E E   D + +AF  L     SPPILALP  G  + +DTDA   QV CAL     +G   PIG
Sbjct:  121 MPFGLKNAPATFQRAVDIILSRVKWETALVYLDDVI-------------------------------CAFFDTSVTYLGHVIRPGRLEVERRNVIAIERARAPTNQTELRSFLGMCNVYRRFVQGFAKIAAPLNKKTGKNQAYEFEILTDAEYAAFEELKRRLVSPPILALPRYGRKYTLDTDACGHQVGCALLQEQPDGGARPIG 295          
BLAST of Gchil3589.t1 vs. uniprot
Match: R7QLF2_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLF2_CHOCR)

HSP 1 Score: 161 bits (408), Expect = 2.490e-42
Identity = 91/206 (44.17%), Postives = 110/206 (53.40%), Query Frame = 0
Query:    1 MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPIG 206
            M F L NAPATFQRA+DI+L+R KW+  LVYL+D                                 C FF  SV YL H IRPG+L  +   V +++ A+  TNQTELRSFLG CNVYR FV  F  VA PLN+   K +P + E   D + +AF  L     SPPILALP  G  + +DTDA   QV CAL     +G   PIG
Sbjct:   54 MPFALKNAPATFQRAVDIILSRVKWETALVYLDD---------------------------------CGFFDTSVTYLGHVIRPGQLEVERRNVIAIERARAPTNQTELRSFLGMCNVYRWFVQGFAKVAAPLNKNTGKNQPYDFEVLTDAEYAAFEELKRRLVSPPILALPRYGRKYTLDTDACGHQVGCALLQEQPDGGTRPIG 226          
BLAST of Gchil3589.t1 vs. uniprot
Match: R7Q4V7_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4V7_CHOCR)

HSP 1 Score: 158 bits (400), Expect = 8.560e-42
Identity = 80/198 (40.40%), Postives = 116/198 (58.59%), Query Frame = 0
Query:    1 MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTST 198
            M FGLTN PA FQRA+DILL+ F+WK  L                             AG+ LKL++C+FF + +KYL H +RPG L  D  R+ +L++ +    QT+LRSFLG CNVYR+FVP++  +A PLN+LL+KG+PV +E F +    +F+ L  A  +PP+LALP   LP+  +   S+++    ++   T
Sbjct:    1 MPFGLTNTPAMFQRAMDILLSPFRWKCCL----------------------------KAGVKLKLRKCEFFVEKIKYLGHVVRPGTLEVDAARIAALEQVRYPQTQTQLRSFLGLCNVYRQFVPHYAKIAHPLNQLLKKGQPVRMEGFDEPCEKSFHKLKGAILAPPVLALPKKDLPYSRNYSVSEKECLAVIWAVQT 170          
BLAST of Gchil3589.t1 vs. uniprot
Match: R7QN04_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN04_CHOCR)

HSP 1 Score: 159 bits (403), Expect = 9.490e-42
Identity = 80/161 (49.69%), Postives = 102/161 (63.35%), Query Frame = 0
Query:   46 LSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEGERHPIG 206
            ++HV++V++ L  AG++LKL +C FF  SV YL H IRPGRL  +   V +++ A+  TNQTELRSFLG CNVYRRFV  F  +ATPLN+   K +P E E   D + +AF  L     SPPILALP  G  + +DTDA   QV CAL     +G   PIG
Sbjct:    1 MAHVREVLRLLHTAGVSLKLAKCAFFDTSVTYLGHVIRPGRLEVERRNVIAIERARAPTNQTELRSFLGMCNVYRRFVQGFAKIATPLNKKTGKNQPYEFEILTDAEYAAFEELKRRLVSPPILALPRYGRKYTLDTDACGHQVGCALLQEQPDGGTRPIG 161          
BLAST of Gchil3589.t1 vs. uniprot
Match: Q8W452_BRANA (Reverse transcriptase (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q8W452_BRANA)

HSP 1 Score: 149 bits (377), Expect = 6.730e-41
Identity = 79/186 (42.47%), Postives = 122/186 (65.59%), Query Frame = 0
Query:    1 MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVKDVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEAKCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVEL-EPFRDTQASAFNSLVEAATSPPILALPTLGLPFEIDTDAS 185
            M FGLTNAPATF   ++ +L  +  + ++ YL+DIV++S++M+E++ H++ V + LR+  + +K ++C F T+ V++L H I  G+L  DE +VK++ E +  T  TELRSFLG  N YRRF+  ++  A PL +LL+KG+  +  EP ++    AF  L  A +  P+LALP   LPFE+ TDAS
Sbjct:   72 MPFGLTNAPATFCTLMNQILQPYLDRFVVAYLDDIVIYSNSMEEHVEHLQTVFRVLRENELFVKREKCTFATEEVQFLGHVIGHGKLKMDEPKVKAIMEWEAPTKVTELRSFLGLVNYYRRFIEGYSRKAAPLTDLLKKGKTWDWSEPCQE----AFEGLKTAVSQEPVLALPDFSLPFELHTDAS 253          
The following BLAST results are available for this feature:
BLAST of Gchil3589.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QRD9_CHOCR1.130e-7456.31Retrotransposon protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1E14075.790e-5852.43uncharacterized protein LOC123543642 n=1 Tax=Merce... [more]
R7QFB9_CHOCR7.770e-5647.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QRS9_CHOCR5.470e-4747.17RT_RNaseH_2 domain-containing protein n=1 Tax=Chon... [more]
R7Q5U0_CHOCR5.200e-4656.76Integrase catalytic domain-containing protein n=1 ... [more]
R7QKK5_CHOCR3.560e-4545.15Integrase catalytic domain-containing protein n=1 ... [more]
R7QLF2_CHOCR2.490e-4244.17Integrase catalytic domain-containing protein n=1 ... [more]
R7Q4V7_CHOCR8.560e-4240.40Integrase catalytic domain-containing protein n=1 ... [more]
R7QN04_CHOCR9.490e-4249.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
Q8W452_BRANA6.730e-4142.47Reverse transcriptase (Fragment) n=1 Tax=Brassica ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 92..188
e-value: 3.1E-19
score: 70.8
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..88
e-value: 6.0E-25
score: 89.6
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 149..206
e-value: 6.3E-9
score: 35.8
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 1..78
e-value: 8.0E-12
score: 45.1
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 1..206
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 1..206
NoneNo IPR availableCDDcd01647RT_LTRcoord: 1..82
e-value: 5.55031E-28
score: 101.903
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1695059..1695682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3589.t1Gchil3589.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004378_pilon 1695059..1695682 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3589.t1 ID=Gchil3589.t1|Name=Gchil3589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=208bp
MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVK
DVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEA
KCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRD
TQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEG
ERHPIGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043128Rev_trsase/Diguanyl_cyclase
IPR041577RT_RNaseH_2
IPR000477RT_dom
IPR043502DNA/RNA_pol_sf