Gchil3589.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3589.t1
Unique NameGchil3589.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1695059..1695682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_018602-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue2.34e-37
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3589Gchil3589Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1695059..1695682 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3589.t1.start1Gchil3589.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1695059..1695061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3589.t1.CDS1Gchil3589.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1695059..1695682 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3589.t1.exon1Gchil3589.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1695059..1695682 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3589.t1.stop1Gchil3589.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1695680..1695682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3589.t1Gchil3589.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1695059..1695682 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3589.t1 ID=Gchil3589.t1|Name=Gchil3589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=208bp
MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVK
DVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEA
KCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRD
TQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEG
ERHPIGC*
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spliced messenger RNA

>Gchil3589.t1 ID=Gchil3589.t1|Name=Gchil3589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00004378_pilon:1695059..1695682+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgacgtttggcttaacgaatgcccctgcaacattccaacgtgcgataga
tatcctactagcccgcttcaagtggaaacccattttggtatatttggaag
atatcgtcgtattctccgacaacatggacgagaatctctcccatgttaag
gatgttgtgaaaacactgcgcgacgcaggaatcacattgaagctcaagga
gtgcaagttctttaccgattcggtcaaatatcttagacataaaatccgac
ccggacggctgtcaaccgatgaagtacgagtaaagtccttgaaggaagcg
aaatgtacgacaaatcaaacagaactcagatcatttcttggctcgtgtaa
tgtatatcgcaggttcgttccgaacttcactgatgtggcaactcctctaa
atgagctccttcggaaaggaagaccggttgaactggaaccattccgagac
acacaagcctctgctttcaattcccttgtggaagctgcgacttctccgcc
aatattagcgcttcccacccttgggcttccatttgaaattgatacggatg
cgagccaagagcaagtttgttgtgcactatttctgacctctacagaaggt
gaacgacatccaataggatgctag
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protein sequence of Gchil3589.t1

>Gchil3589.t1 ID=Gchil3589.t1|Name=Gchil3589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=208bp
MTFGLTNAPATFQRAIDILLARFKWKPILVYLEDIVVFSDNMDENLSHVK
DVVKTLRDAGITLKLKECKFFTDSVKYLRHKIRPGRLSTDEVRVKSLKEA
KCTTNQTELRSFLGSCNVYRRFVPNFTDVATPLNELLRKGRPVELEPFRD
TQASAFNSLVEAATSPPILALPTLGLPFEIDTDASQEQVCCALFLTSTEG
ERHPIGC*
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mRNA from alignment at tig00004378_pilon:1695059..1695682+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3589.t1 ID=Gchil3589.t1|Name=Gchil3589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00004378_pilon:1695059..1695682+ (Gracilaria chilensis NLEC103_M9 male)
atgacgtttggcttaacgaatgcccctgcaacattccaacgtgcgataga
tatcctactagcccgcttcaagtggaaacccattttggtatatttggaag
atatcgtcgtattctccgacaacatggacgagaatctctcccatgttaag
gatgttgtgaaaacactgcgcgacgcaggaatcacattgaagctcaagga
gtgcaagttctttaccgattcggtcaaatatcttagacataaaatccgac
ccggacggctgtcaaccgatgaagtacgagtaaagtccttgaaggaagcg
aaatgtacgacaaatcaaacagaactcagatcatttcttggctcgtgtaa
tgtatatcgcaggttcgttccgaacttcactgatgtggcaactcctctaa
atgagctccttcggaaaggaagaccggttgaactggaaccattccgagac
acacaagcctctgctttcaattcccttgtggaagctgcgacttctccgcc
aatattagcgcttcccacccttgggcttccatttgaaattgatacggatg
cgagccaagagcaagtttgttgtgcactatttctgacctctacagaaggt
gaacgacatccaataggatgctag
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Coding sequence (CDS) from alignment at tig00004378_pilon:1695059..1695682+

>Gchil3589.t1 ID=Gchil3589.t1|Name=Gchil3589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=624bp|location=Sequence derived from alignment at tig00004378_pilon:1695059..1695682+ (Gracilaria chilensis NLEC103_M9 male)
atgacgtttggcttaacgaatgcccctgcaacattccaacgtgcgataga
tatcctactagcccgcttcaagtggaaacccattttggtatatttggaag
atatcgtcgtattctccgacaacatggacgagaatctctcccatgttaag
gatgttgtgaaaacactgcgcgacgcaggaatcacattgaagctcaagga
gtgcaagttctttaccgattcggtcaaatatcttagacataaaatccgac
ccggacggctgtcaaccgatgaagtacgagtaaagtccttgaaggaagcg
aaatgtacgacaaatcaaacagaactcagatcatttcttggctcgtgtaa
tgtatatcgcaggttcgttccgaacttcactgatgtggcaactcctctaa
atgagctccttcggaaaggaagaccggttgaactggaaccattccgagac
acacaagcctctgctttcaattcccttgtggaagctgcgacttctccgcc
aatattagcgcttcccacccttgggcttccatttgaaattgatacggatg
cgagccaagagcaagtttgttgtgcactatttctgacctctacagaaggt
gaacgacatccaataggatgctag
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