Gchil3500.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3500.t1
Unique NameGchil3500.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length809
Homology
BLAST of Gchil3500.t1 vs. uniprot
Match: R7QPU3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPU3_CHOCR)

HSP 1 Score: 447 bits (1149), Expect = 1.310e-144
Identity = 260/577 (45.06%), Postives = 359/577 (62.22%), Query Frame = 0
Query:  236 VIDYLNIDLQTPSKPLDMQNGLAYNVTRCVANLARDTETHGSLLETSLLRNLCDMLRQL-TPKVLEKDELQSETARHIILAVSALSKSAAQPVVQSNAHKALISFA-QCNDAIAQSYSCGGIRNLARHSHAEKDEDIA--KVHRELVVANVADALGHGM-KAASAQTRVFSVLAFGDLMNTPHKKADLIRRRLEPAYEAFSQLLADKNQAILRAVSRVIITIFGEDGSKS-------VVPEKLAKLVAQQCGQLVNGGVARGDRAALGAVSAMCNDEIVAKEMVGKGVLEVLVLGVKKGNTDFLQQCTKALSSLSAWSDLSQLIVSRGALSAVMRRPSLEQDARHVATFFANLARNADLQVEIAHGGIKTLLIALSSKDGDARKEAARALYNLSLGGVTKVMVAQSGALLPLVRVVSXXXXXXXXXXXXVLTDISSAPARATAFAEANVIGSLLKAAADDHTLSCDVARCISQLSQVAEVHGLMVKSGAIPWLVKMISRNGGRGERAGDTLLYCMIAVNNIAFSPGITREALRESGAVPLLKSLSSSGMSSPMVLMGAKQALKNIRG-EQVALLPVE 799
            ++DYL   L TP    D+  G++Y+  RC +NLAR++ TH  LL+  LL  LCD LR          D   +E     ILAV+AL+KSA   VV    HK L+ F  + ++++AQ Y+ GGIRNLARH     D  +A  +VHRELVV    DAL  GM K AS QTR FSVLAFGDLM T H KA +IRR LEPA+  F+ L+ +KN  I R V R +  +FG  G+         + P  L  L+A++ GQ++NG VARGD  AL AV AMC DE +A+ MV +G+LEVLV G  KG  ++ ++   AL  L+ W  +  L+  RGAL A++ RP L+ D R    F AN+A++ + QVE+A GG+K L ++L SKD  AR++AARA YNLSLGGV++VM+ QSG L PLVR  S             L  IS +        EA+ I  +L+AA +D  ++ D A CI+ +SQ+ E HG + +SGA  WLV+M+S+NGGRG  A +T+ Y  + + N+A+S G+TR ALRE+GA+ +L ++S+S M +P   M +KQAL+N++G E+  +LPV+
Sbjct:    1 MVDYL-AGLSTPPTQTDLGAGISYHAVRCASNLARNSLTHAHLLDAGLLPLLCDALRTADVSHFAAADHQLTELVLCTILAVAALAKSAPSDVVAGGGHKRLLYFMKEQHESVAQMYAAGGIRNLARHG----DRTVANWRVHRELVVNGAVDALRAGMAKEASPQTRTFSVLAFGDLMTTGHHKAAIIRRWLEPAFRDFANLVNEKNAGIARTVYRTLTALFGGGGTDKRNGETPVLAPPALCALLAKESGQIINGPVARGDLPALKAVHAMCRDETLAQGMVDQGLLEVLVRGASKGKGEYWEESVAALGILAGWEKVQPLMAPRGALKAILARPCLKHDGRWTVQFLANMAKSGNHQVEVARGGLKVLSLSLVSKDEAARRDAARAFYNLSLGGVSRVMLGQSGILGPLVRTASSSVGDTRRFAIATLAKISESMEHTIKLVEADTISVMLQAAKEDSRIAKDAAFCIATMSQMVEAHGSLARSGAAAWLVEMLSKNGGRGPDAAETMQYAALGICNLAYSAGVTRNALRENGALSVLTAISASTMGAPQTAMISKQALRNLKGNEKPGMLPVQ 572          
BLAST of Gchil3500.t1 vs. uniprot
Match: A0A7S0BPX2_9RHOD (Vacuolar protein 8 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BPX2_9RHOD)

HSP 1 Score: 151 bits (381), Expect = 3.200e-34
Identity = 152/672 (22.62%), Postives = 307/672 (45.68%), Query Frame = 0
Query:  149 LPLRLNIVRLLADLSKQHESHEFFVKANIVSILDRIVAESAAGMR---EGWLDWIYRSFSFGSSKEAATQPKQVGEKSTPFDDQSTPGDAVIDYLNIDLQTPSKPLDMQNGLAYNVTRCVANLARDTETHGSLLETSLLRNLCDMLRQLTPKVLEKDELQSETARHIILAVSALSKSAAQPVVQSNAHKALISF--AQCNDAIAQSYSCGGIRNLARHSHAEKDEDIAKVHRELVVANVADALGHGMKAA-SAQTRVFSVLAFGDLMNTPHKKADLIRRRLEPA--YEAFSQLLADKNQAILRAVSRVIITIFG----EDGSKSVVPEKLAKL-VAQQCGQLVNGGVARGDRAALGAVSAMCNDEIVAKEMVGKGVLEVLVLGVKKGNTDFLQQCTKALSSLSAWSDLSQLIVSRGALSAVMRRPSLEQDARHVATFF-ANLARNADLQVEIAHGGIKTLLIALSSK---DGDARKEAARALYNLSLGGVTKVMVAQSGALLPLVRVVSXXXXXXXXXXXXVLTDISSAPARATAFAEANVIGSLLKAAADDHTLSCDVARCISQLSQVAEVHGLMVKSGAIPWLVKMISRNGGRGERAGDTLLYCMIAVNNIAFSPGITREALRESGAVPLLKSLSSSGMSSPMVLMGAKQALKNIRGEQVALLPVESITP 803
            LP  L++V L   L+ ++  ++ +++  I+ ++ R+  + AA ++      +D IY        K+    P   G  +     +   G    D   +  +TP   L     L+   ++ +AN+A+    +   ++ + + NLC+ + +L+  V        ET R+++L ++ +      P       + ++ F  A+  D ++Q Y+ GG+RN+ ++S          +H+ LV+     AL + +  +   + +  +  A  DL  + + +A++IR R+  +  +EA  ++L   NQ +LR+ S+ I  I       D ++  + ++  K  V  Q  +L  G +     AA   +  +   + +++  +  G   V++      +     +   AL+ +S  S+ +  +V  G L  V+   S      +  T   ANL R  +L+ E+AH G   LL A+ +    D   +KEA R L+NLS+ G+++VMV Q G+LLPL+  V              L+++      +    E   +  L+    +D  L C    C+ + + + E+H  +V+ G +     +I     R  R+ + ++Y ++ + N+A S  + RE +RE+GA+ LL S++ + + S  +   A+  L N++  +  ++ V   +P
Sbjct:  106 LPAELSVV-LKTLLASENVDYDIYIR--ILKVISRLSEKQAAALKFLKTDAVDSIYEVL-----KDVVGWPWDSGNYAKKMFHRLFLGGT--DNTRLAEKTPQGVL-----LSELCSKILANIAKVALDYHPFVKDNRI-NLCNRMIKLSENV--------ETRRNMLLILACIVSKEGFPEDSGTTLQNILEFVSAENPDPVSQWYATGGLRNMCKNS---------SMHKNLVLKGAIPALVNVLLTSPEPKAQALAASAVADLSTSAYARAEVIRVRMVDSLTFEALGRVLKSSNQGVLRSTSKAIDAILSGVPLNDRARQPIVDQFKKAGVPGQITRLSLGRLPPVVSAATSCLYTLAAIDGLSEPALEAGAARVIIGACNSFDPGMASRALDALAQMSESSERADYLVQAGVLRVVLAIRSTNPVITYPLTILLANLTRKEELRAEVAHEGGLVLLNAMLTSGNIDEGTKKEALRVLHNLSVSGLSRVMVVQYGSLLPLIENVKHENAEMKLLAVKTLSNLMEGLESSMKAFETGGLAPLIACGKEDGELGCRAVLCVGEFTNLQELHSEIVRQGGVELFANVI-----RAGRSSEAVVYAVLGLCNLAASE-VARERIREAGAIGLLNSVAHTMLYSGEIAAVAEAGLANLQKGEKTMIQVLPASP 738          
The following BLAST results are available for this feature:
BLAST of Gchil3500.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QPU3_CHOCR1.310e-14445.06Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0BPX2_9RHOD3.200e-3422.62Vacuolar protein 8 n=3 Tax=Rhodosorus marinus TaxI... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 700..746
e-value: 200.0
score: 3.2
coord: 119..164
e-value: 230.0
score: 2.7
coord: 660..699
e-value: 92.0
score: 5.8
coord: 619..659
e-value: 200.0
score: 3.1
coord: 498..539
e-value: 33.0
score: 9.2
coord: 747..790
e-value: 450.0
score: 0.4
coord: 320..360
e-value: 5.1
score: 15.5
coord: 578..618
e-value: 3.6
score: 16.6
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 477..792
e-value: 1.2E-35
score: 125.1
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 89..460
e-value: 1.5E-12
score: 48.8
IPR045156Vacuolar protein 8PANTHERPTHR47249VACUOLAR PROTEIN 8coord: 482..719
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 115..546
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 488..788

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:637791..640217 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3500.t1Gchil3500.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004378_pilon 637791..640217 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3500.t1 ID=Gchil3500.t1|Name=Gchil3500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=809bp
MQSFSRLSRTAACFLARHARRSSSNSNRTRSGSASEVPGIALLTTAAAVG
VFAYCDADVAVPQTQPPTFFNTVPAPPKSRHEGGTFASLKSPPSQYTALL
EEVSEGDARAIHTLALLVNDIHNHSQLLKANVVSALRDALFVCEKEHQLP
LRLNIVRLLADLSKQHESHEFFVKANIVSILDRIVAESAAGMREGWLDWI
YRSFSFGSSKEAATQPKQVGEKSTPFDDQSTPGDAVIDYLNIDLQTPSKP
LDMQNGLAYNVTRCVANLARDTETHGSLLETSLLRNLCDMLRQLTPKVLE
KDELQSETARHIILAVSALSKSAAQPVVQSNAHKALISFAQCNDAIAQSY
SCGGIRNLARHSHAEKDEDIAKVHRELVVANVADALGHGMKAASAQTRVF
SVLAFGDLMNTPHKKADLIRRRLEPAYEAFSQLLADKNQAILRAVSRVII
TIFGEDGSKSVVPEKLAKLVAQQCGQLVNGGVARGDRAALGAVSAMCNDE
IVAKEMVGKGVLEVLVLGVKKGNTDFLQQCTKALSSLSAWSDLSQLIVSR
GALSAVMRRPSLEQDARHVATFFANLARNADLQVEIAHGGIKTLLIALSS
KDGDARKEAARALYNLSLGGVTKVMVAQSGALLPLVRVVSTSTGDARRYA
VSVLTDISSAPARATAFAEANVIGSLLKAAADDHTLSCDVARCISQLSQV
AEVHGLMVKSGAIPWLVKMISRNGGRGERAGDTLLYCMIAVNNIAFSPGI
TREALRESGAVPLLKSLSSSGMSSPMVLMGAKQALKNIRGEQVALLPVES
ITPQGKPE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR045156Vac8
IPR016024ARM-type_fold