Gchil3500.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3500.t1
Unique NameGchil3500.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length809
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:637791..640217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704025.1
Preferred nameKIF17
PFAMsArm,EDR1,Kinesin
Max annot lvl2759|Eukaryota
KEGG koko:K10396,ko:K20198
KEGG Pathwayko04144,ko04728,map04144,map04728
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0008017,GO:0008092,GO:0015630,GO:0015631,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Evalue1.09e-43
EggNOG OGsCOG5059@1|root,KOG0240@2759|Eukaryota
Descriptionmicrotubule motor activity
COG categoryZ
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3500Gchil3500Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 637791..640217 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3500.t1.stop1Gchil3500.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 637791..637793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3500.t1.CDS1Gchil3500.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 637791..640217 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3500.t1.exon1Gchil3500.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 637791..640217 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3500.t1.start1Gchil3500.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 640215..640217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3500.t1Gchil3500.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 637791..640217 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3500.t1 ID=Gchil3500.t1|Name=Gchil3500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=809bp
MQSFSRLSRTAACFLARHARRSSSNSNRTRSGSASEVPGIALLTTAAAVG
VFAYCDADVAVPQTQPPTFFNTVPAPPKSRHEGGTFASLKSPPSQYTALL
EEVSEGDARAIHTLALLVNDIHNHSQLLKANVVSALRDALFVCEKEHQLP
LRLNIVRLLADLSKQHESHEFFVKANIVSILDRIVAESAAGMREGWLDWI
YRSFSFGSSKEAATQPKQVGEKSTPFDDQSTPGDAVIDYLNIDLQTPSKP
LDMQNGLAYNVTRCVANLARDTETHGSLLETSLLRNLCDMLRQLTPKVLE
KDELQSETARHIILAVSALSKSAAQPVVQSNAHKALISFAQCNDAIAQSY
SCGGIRNLARHSHAEKDEDIAKVHRELVVANVADALGHGMKAASAQTRVF
SVLAFGDLMNTPHKKADLIRRRLEPAYEAFSQLLADKNQAILRAVSRVII
TIFGEDGSKSVVPEKLAKLVAQQCGQLVNGGVARGDRAALGAVSAMCNDE
IVAKEMVGKGVLEVLVLGVKKGNTDFLQQCTKALSSLSAWSDLSQLIVSR
GALSAVMRRPSLEQDARHVATFFANLARNADLQVEIAHGGIKTLLIALSS
KDGDARKEAARALYNLSLGGVTKVMVAQSGALLPLVRVVSTSTGDARRYA
VSVLTDISSAPARATAFAEANVIGSLLKAAADDHTLSCDVARCISQLSQV
AEVHGLMVKSGAIPWLVKMISRNGGRGERAGDTLLYCMIAVNNIAFSPGI
TREALRESGAVPLLKSLSSSGMSSPMVLMGAKQALKNIRGEQVALLPVES
ITPQGKPE*
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spliced messenger RNA

>Gchil3500.t1 ID=Gchil3500.t1|Name=Gchil3500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2427bp|location=Sequence derived from alignment at tig00004378_pilon:637791..640217- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCGTTCTCCCGACTATCTCGCACGGCTGCATGTTTTCTTGCTCG
ACATGCGCGAAGATCATCAAGCAACTCAAACCGTACCCGCAGTGGCTCTG
CTTCTGAGGTGCCTGGTATCGCTTTGCTAACTACCGCCGCAGCAGTTGGC
GTCTTCGCGTACTGTGATGCAGATGTGGCTGTCCCCCAAACTCAGCCACC
AACCTTCTTCAATACCGTTCCTGCGCCGCCCAAATCTCGACATGAGGGCG
GTACTTTTGCGTCACTGAAGAGTCCACCCTCGCAGTACACAGCCTTACTC
GAAGAGGTCAGTGAAGGCGACGCTCGCGCGATTCATACGCTTGCACTGCT
AGTTAACGATATACACAACCATTCTCAACTGTTGAAAGCAAATGTTGTAT
CAGCATTGCGAGATGCGCTCTTTGTGTGTGAGAAAGAGCACCAACTTCCT
CTCCGTCTCAATATAGTAAGATTGCTAGCCGATCTTTCAAAACAGCATGA
ATCGCATGAATTCTTCGTCAAAGCAAATATTGTGTCGATCTTGGATCGCA
TCGTTGCGGAAAGCGCCGCGGGAATGAGGGAAGGCTGGTTAGATTGGATT
TATCGATCCTTCTCATTTGGCTCCAGCAAAGAGGCAGCAACTCAACCAAA
ACAGGTCGGAGAAAAAAGTACTCCATTTGATGATCAGTCAACCCCTGGAG
ATGCCGTCATAGACTATTTGAATATTGATCTACAAACCCCTTCCAAGCCG
TTGGATATGCAAAATGGTCTGGCATATAACGTCACACGATGTGTCGCCAA
CCTTGCTCGGGACACAGAAACGCACGGTTCTTTGCTGGAGACAAGTCTTT
TGCGCAATCTTTGCGACATGCTTCGCCAATTAACCCCAAAAGTTTTAGAA
AAAGACGAACTTCAATCCGAAACCGCACGTCACATTATTCTTGCTGTGAG
CGCCTTGAGCAAAAGCGCCGCGCAACCGGTTGTTCAATCGAATGCCCACA
AAGCGCTAATTTCCTTTGCCCAGTGTAACGATGCTATAGCTCAATCCTAT
TCGTGCGGCGGTATCCGAAACCTTGCTCGGCACAGTCATGCTGAAAAGGA
TGAAGACATTGCAAAAGTACATCGGGAATTAGTGGTCGCAAATGTTGCTG
ATGCTCTGGGGCATGGTATGAAGGCTGCGTCGGCACAAACTAGAGTATTC
TCTGTGCTAGCGTTCGGGGATTTGATGAATACACCACATAAGAAAGCAGA
TCTCATTCGAAGACGTTTAGAACCAGCATACGAAGCTTTTTCTCAACTGT
TGGCGGATAAGAACCAAGCTATATTACGCGCTGTTTCTCGGGTGATCATA
ACCATCTTTGGAGAAGATGGAAGCAAATCTGTCGTACCAGAGAAGTTAGC
AAAACTGGTTGCCCAGCAATGCGGGCAACTTGTCAATGGGGGTGTTGCTC
GGGGAGACAGAGCTGCACTGGGCGCAGTAAGTGCAATGTGTAATGATGAA
ATCGTCGCGAAGGAAATGGTTGGAAAGGGTGTGTTGGAAGTTCTGGTTCT
CGGAGTGAAGAAAGGTAACACCGACTTCCTTCAACAATGCACAAAAGCTC
TCAGCTCACTGAGCGCCTGGAGTGACTTATCGCAACTCATTGTTTCTCGT
GGGGCTTTGTCGGCAGTAATGAGAAGGCCGTCATTGGAACAAGACGCGCG
TCATGTTGCGACTTTTTTCGCAAATCTTGCGAGGAATGCTGACCTGCAAG
TGGAAATTGCTCACGGAGGGATTAAAACATTGCTAATAGCGCTATCGTCC
AAGGATGGCGACGCTCGAAAAGAAGCTGCTAGAGCTTTGTACAACCTTTC
ACTTGGTGGAGTCACGAAGGTAATGGTAGCCCAGAGTGGTGCGTTACTAC
CTTTAGTTAGGGTTGTGTCGACATCAACTGGAGATGCACGTCGATATGCA
GTAAGTGTGTTGACGGATATATCTTCAGCACCAGCACGGGCTACGGCGTT
TGCCGAGGCTAATGTGATTGGGTCACTACTCAAAGCGGCTGCGGACGATC
ACACGCTTTCTTGTGATGTTGCTCGATGTATTAGCCAGCTTTCGCAGGTC
GCCGAGGTTCATGGTTTAATGGTGAAAAGTGGAGCCATTCCATGGCTTGT
CAAAATGATTTCTCGAAATGGAGGGAGGGGAGAAAGAGCGGGAGATACAT
TGTTATATTGTATGATTGCAGTTAATAACATAGCGTTCTCACCGGGGATA
ACTAGAGAAGCTCTTCGCGAAAGCGGAGCCGTTCCGCTGCTGAAGTCTCT
GTCATCATCAGGAATGAGCAGCCCAATGGTATTAATGGGAGCGAAGCAAG
CATTGAAGAATATAAGGGGAGAGCAGGTGGCGCTGCTTCCAGTTGAAAGC
ATAACTCCCCAGGGTAAGCCAGAGTGA
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protein sequence of Gchil3500.t1

>Gchil3500.t1 ID=Gchil3500.t1|Name=Gchil3500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=809bp
MQSFSRLSRTAACFLARHARRSSSNSNRTRSGSASEVPGIALLTTAAAVG
VFAYCDADVAVPQTQPPTFFNTVPAPPKSRHEGGTFASLKSPPSQYTALL
EEVSEGDARAIHTLALLVNDIHNHSQLLKANVVSALRDALFVCEKEHQLP
LRLNIVRLLADLSKQHESHEFFVKANIVSILDRIVAESAAGMREGWLDWI
YRSFSFGSSKEAATQPKQVGEKSTPFDDQSTPGDAVIDYLNIDLQTPSKP
LDMQNGLAYNVTRCVANLARDTETHGSLLETSLLRNLCDMLRQLTPKVLE
KDELQSETARHIILAVSALSKSAAQPVVQSNAHKALISFAQCNDAIAQSY
SCGGIRNLARHSHAEKDEDIAKVHRELVVANVADALGHGMKAASAQTRVF
SVLAFGDLMNTPHKKADLIRRRLEPAYEAFSQLLADKNQAILRAVSRVII
TIFGEDGSKSVVPEKLAKLVAQQCGQLVNGGVARGDRAALGAVSAMCNDE
IVAKEMVGKGVLEVLVLGVKKGNTDFLQQCTKALSSLSAWSDLSQLIVSR
GALSAVMRRPSLEQDARHVATFFANLARNADLQVEIAHGGIKTLLIALSS
KDGDARKEAARALYNLSLGGVTKVMVAQSGALLPLVRVVSTSTGDARRYA
VSVLTDISSAPARATAFAEANVIGSLLKAAADDHTLSCDVARCISQLSQV
AEVHGLMVKSGAIPWLVKMISRNGGRGERAGDTLLYCMIAVNNIAFSPGI
TREALRESGAVPLLKSLSSSGMSSPMVLMGAKQALKNIRGEQVALLPVES
ITPQGKPE*
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mRNA from alignment at tig00004378_pilon:637791..640217-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3500.t1 ID=Gchil3500.t1|Name=Gchil3500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2427bp|location=Sequence derived from alignment at tig00004378_pilon:637791..640217- (Gracilaria chilensis NLEC103_M9 male)
ATGCAATCGTTCTCCCGACTATCTCGCACGGCTGCATGTTTTCTTGCTCG ACATGCGCGAAGATCATCAAGCAACTCAAACCGTACCCGCAGTGGCTCTG CTTCTGAGGTGCCTGGTATCGCTTTGCTAACTACCGCCGCAGCAGTTGGC GTCTTCGCGTACTGTGATGCAGATGTGGCTGTCCCCCAAACTCAGCCACC AACCTTCTTCAATACCGTTCCTGCGCCGCCCAAATCTCGACATGAGGGCG GTACTTTTGCGTCACTGAAGAGTCCACCCTCGCAGTACACAGCCTTACTC GAAGAGGTCAGTGAAGGCGACGCTCGCGCGATTCATACGCTTGCACTGCT AGTTAACGATATACACAACCATTCTCAACTGTTGAAAGCAAATGTTGTAT CAGCATTGCGAGATGCGCTCTTTGTGTGTGAGAAAGAGCACCAACTTCCT CTCCGTCTCAATATAGTAAGATTGCTAGCCGATCTTTCAAAACAGCATGA ATCGCATGAATTCTTCGTCAAAGCAAATATTGTGTCGATCTTGGATCGCA TCGTTGCGGAAAGCGCCGCGGGAATGAGGGAAGGCTGGTTAGATTGGATT TATCGATCCTTCTCATTTGGCTCCAGCAAAGAGGCAGCAACTCAACCAAA ACAGGTCGGAGAAAAAAGTACTCCATTTGATGATCAGTCAACCCCTGGAG ATGCCGTCATAGACTATTTGAATATTGATCTACAAACCCCTTCCAAGCCG TTGGATATGCAAAATGGTCTGGCATATAACGTCACACGATGTGTCGCCAA CCTTGCTCGGGACACAGAAACGCACGGTTCTTTGCTGGAGACAAGTCTTT TGCGCAATCTTTGCGACATGCTTCGCCAATTAACCCCAAAAGTTTTAGAA AAAGACGAACTTCAATCCGAAACCGCACGTCACATTATTCTTGCTGTGAG CGCCTTGAGCAAAAGCGCCGCGCAACCGGTTGTTCAATCGAATGCCCACA AAGCGCTAATTTCCTTTGCCCAGTGTAACGATGCTATAGCTCAATCCTAT TCGTGCGGCGGTATCCGAAACCTTGCTCGGCACAGTCATGCTGAAAAGGA TGAAGACATTGCAAAAGTACATCGGGAATTAGTGGTCGCAAATGTTGCTG ATGCTCTGGGGCATGGTATGAAGGCTGCGTCGGCACAAACTAGAGTATTC TCTGTGCTAGCGTTCGGGGATTTGATGAATACACCACATAAGAAAGCAGA TCTCATTCGAAGACGTTTAGAACCAGCATACGAAGCTTTTTCTCAACTGT TGGCGGATAAGAACCAAGCTATATTACGCGCTGTTTCTCGGGTGATCATA ACCATCTTTGGAGAAGATGGAAGCAAATCTGTCGTACCAGAGAAGTTAGC AAAACTGGTTGCCCAGCAATGCGGGCAACTTGTCAATGGGGGTGTTGCTC GGGGAGACAGAGCTGCACTGGGCGCAGTAAGTGCAATGTGTAATGATGAA ATCGTCGCGAAGGAAATGGTTGGAAAGGGTGTGTTGGAAGTTCTGGTTCT CGGAGTGAAGAAAGGTAACACCGACTTCCTTCAACAATGCACAAAAGCTC TCAGCTCACTGAGCGCCTGGAGTGACTTATCGCAACTCATTGTTTCTCGT GGGGCTTTGTCGGCAGTAATGAGAAGGCCGTCATTGGAACAAGACGCGCG TCATGTTGCGACTTTTTTCGCAAATCTTGCGAGGAATGCTGACCTGCAAG TGGAAATTGCTCACGGAGGGATTAAAACATTGCTAATAGCGCTATCGTCC AAGGATGGCGACGCTCGAAAAGAAGCTGCTAGAGCTTTGTACAACCTTTC ACTTGGTGGAGTCACGAAGGTAATGGTAGCCCAGAGTGGTGCGTTACTAC CTTTAGTTAGGGTTGTGTCGACATCAACTGGAGATGCACGTCGATATGCA GTAAGTGTGTTGACGGATATATCTTCAGCACCAGCACGGGCTACGGCGTT TGCCGAGGCTAATGTGATTGGGTCACTACTCAAAGCGGCTGCGGACGATC ACACGCTTTCTTGTGATGTTGCTCGATGTATTAGCCAGCTTTCGCAGGTC GCCGAGGTTCATGGTTTAATGGTGAAAAGTGGAGCCATTCCATGGCTTGT CAAAATGATTTCTCGAAATGGAGGGAGGGGAGAAAGAGCGGGAGATACAT TGTTATATTGTATGATTGCAGTTAATAACATAGCGTTCTCACCGGGGATA ACTAGAGAAGCTCTTCGCGAAAGCGGAGCCGTTCCGCTGCTGAAGTCTCT GTCATCATCAGGAATGAGCAGCCCAATGGTATTAATGGGAGCGAAGCAAG CATTGAAGAATATAAGGGGAGAGCAGGTGGCGCTGCTTCCAGTTGAAAGC ATAACTCCCCAGGGTAAGCCAGAGTGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:637791..640217-

>Gchil3500.t1 ID=Gchil3500.t1|Name=Gchil3500.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2427bp|location=Sequence derived from alignment at tig00004378_pilon:637791..640217- (Gracilaria chilensis NLEC103_M9 male)
ATGCAATCGTTCTCCCGACTATCTCGCACGGCTGCATGTTTTCTTGCTCG
ACATGCGCGAAGATCATCAAGCAACTCAAACCGTACCCGCAGTGGCTCTG
CTTCTGAGGTGCCTGGTATCGCTTTGCTAACTACCGCCGCAGCAGTTGGC
GTCTTCGCGTACTGTGATGCAGATGTGGCTGTCCCCCAAACTCAGCCACC
AACCTTCTTCAATACCGTTCCTGCGCCGCCCAAATCTCGACATGAGGGCG
GTACTTTTGCGTCACTGAAGAGTCCACCCTCGCAGTACACAGCCTTACTC
GAAGAGGTCAGTGAAGGCGACGCTCGCGCGATTCATACGCTTGCACTGCT
AGTTAACGATATACACAACCATTCTCAACTGTTGAAAGCAAATGTTGTAT
CAGCATTGCGAGATGCGCTCTTTGTGTGTGAGAAAGAGCACCAACTTCCT
CTCCGTCTCAATATAGTAAGATTGCTAGCCGATCTTTCAAAACAGCATGA
ATCGCATGAATTCTTCGTCAAAGCAAATATTGTGTCGATCTTGGATCGCA
TCGTTGCGGAAAGCGCCGCGGGAATGAGGGAAGGCTGGTTAGATTGGATT
TATCGATCCTTCTCATTTGGCTCCAGCAAAGAGGCAGCAACTCAACCAAA
ACAGGTCGGAGAAAAAAGTACTCCATTTGATGATCAGTCAACCCCTGGAG
ATGCCGTCATAGACTATTTGAATATTGATCTACAAACCCCTTCCAAGCCG
TTGGATATGCAAAATGGTCTGGCATATAACGTCACACGATGTGTCGCCAA
CCTTGCTCGGGACACAGAAACGCACGGTTCTTTGCTGGAGACAAGTCTTT
TGCGCAATCTTTGCGACATGCTTCGCCAATTAACCCCAAAAGTTTTAGAA
AAAGACGAACTTCAATCCGAAACCGCACGTCACATTATTCTTGCTGTGAG
CGCCTTGAGCAAAAGCGCCGCGCAACCGGTTGTTCAATCGAATGCCCACA
AAGCGCTAATTTCCTTTGCCCAGTGTAACGATGCTATAGCTCAATCCTAT
TCGTGCGGCGGTATCCGAAACCTTGCTCGGCACAGTCATGCTGAAAAGGA
TGAAGACATTGCAAAAGTACATCGGGAATTAGTGGTCGCAAATGTTGCTG
ATGCTCTGGGGCATGGTATGAAGGCTGCGTCGGCACAAACTAGAGTATTC
TCTGTGCTAGCGTTCGGGGATTTGATGAATACACCACATAAGAAAGCAGA
TCTCATTCGAAGACGTTTAGAACCAGCATACGAAGCTTTTTCTCAACTGT
TGGCGGATAAGAACCAAGCTATATTACGCGCTGTTTCTCGGGTGATCATA
ACCATCTTTGGAGAAGATGGAAGCAAATCTGTCGTACCAGAGAAGTTAGC
AAAACTGGTTGCCCAGCAATGCGGGCAACTTGTCAATGGGGGTGTTGCTC
GGGGAGACAGAGCTGCACTGGGCGCAGTAAGTGCAATGTGTAATGATGAA
ATCGTCGCGAAGGAAATGGTTGGAAAGGGTGTGTTGGAAGTTCTGGTTCT
CGGAGTGAAGAAAGGTAACACCGACTTCCTTCAACAATGCACAAAAGCTC
TCAGCTCACTGAGCGCCTGGAGTGACTTATCGCAACTCATTGTTTCTCGT
GGGGCTTTGTCGGCAGTAATGAGAAGGCCGTCATTGGAACAAGACGCGCG
TCATGTTGCGACTTTTTTCGCAAATCTTGCGAGGAATGCTGACCTGCAAG
TGGAAATTGCTCACGGAGGGATTAAAACATTGCTAATAGCGCTATCGTCC
AAGGATGGCGACGCTCGAAAAGAAGCTGCTAGAGCTTTGTACAACCTTTC
ACTTGGTGGAGTCACGAAGGTAATGGTAGCCCAGAGTGGTGCGTTACTAC
CTTTAGTTAGGGTTGTGTCGACATCAACTGGAGATGCACGTCGATATGCA
GTAAGTGTGTTGACGGATATATCTTCAGCACCAGCACGGGCTACGGCGTT
TGCCGAGGCTAATGTGATTGGGTCACTACTCAAAGCGGCTGCGGACGATC
ACACGCTTTCTTGTGATGTTGCTCGATGTATTAGCCAGCTTTCGCAGGTC
GCCGAGGTTCATGGTTTAATGGTGAAAAGTGGAGCCATTCCATGGCTTGT
CAAAATGATTTCTCGAAATGGAGGGAGGGGAGAAAGAGCGGGAGATACAT
TGTTATATTGTATGATTGCAGTTAATAACATAGCGTTCTCACCGGGGATA
ACTAGAGAAGCTCTTCGCGAAAGCGGAGCCGTTCCGCTGCTGAAGTCTCT
GTCATCATCAGGAATGAGCAGCCCAATGGTATTAATGGGAGCGAAGCAAG
CATTGAAGAATATAAGGGGAGAGCAGGTGGCGCTGCTTCCAGTTGAAAGC
ATAACTCCCCAGGGTAAGCCAGAGTGA
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