Gchil3349.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3349.t1
Unique NameGchil3349.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length294
Homology
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A2V3IPV7_9FLOR (THO complex subunit 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV7_9FLOR)

HSP 1 Score: 377 bits (969), Expect = 4.500e-129
Identity = 207/293 (70.65%), Postives = 221/293 (75.43%), Query Frame = 0
Query:    1 MLDHHESTXXXXXXXXXXXXXXXXVRDPKTGETRVXXXXXXXXXXXXXXTTLPSSSGAPSPSPPSSYRYRSGADSEYDRRTNGYPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRRMQPQAPPQGASLGVRGGVRKNYYDRRGTRSSPYSEEYEXXXXXXXXXXXXXDRLYSHGRDNDYARTHHMNEYERGFEPQHGYYRRNRSDAQNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGI 293
            MLDHH+S                 VRDPKTGETR+                  S++ APS  PPS YRYRSG D++YDR+ N YPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRR QP A PQGA+LGVRGGVRKNYYDR+GTRSSPYSEEYE       XXXXXX               H MN+Y+R +E QHGYYRRNRSD QNDDEDL GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDR+GNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNG+
Sbjct:    6 MLDHHDSAPPPTHPSSFRRRPIV-VRDPKTGETRLVGGGPPGPAARRPNF---STASAPSQPPPSGYRYRSGFDADYDRQQNPYPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRRPQPPAQPQGANLGVRGGVRKNYYDRKGTRSSPYSEEYEDDRRPDYXXXXXXXXXXXXXXXXXXXXDHRMNDYDRPYEGQHGYYRRNRSDVQNDDEDLTGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDRDGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL 294          
BLAST of Gchil3349.t1 vs. uniprot
Match: R7Q7Q7_CHOCR (THO complex subunit 4-like n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Q7_CHOCR)

HSP 1 Score: 214 bits (546), Expect = 2.520e-64
Identity = 144/285 (50.53%), Postives = 161/285 (56.49%), Query Frame = 0
Query:   25 VRDPKTGETRVXXXXXXXXXXXXXXTTLPSSSGAPSPSPPSSYRYRSGADSEYDRRTNGYPPFDDQGR---APIMKIVSGYRGRQIVVRDPSRRMQPQAPPQ---GASLGVRGG-VRK-NYYDRRGTRSSPYSEEYEXXXXXXXXXXXXXD-----RLYSHGRDNDYARTHHMNEYERGFEPQHGYYRRNRSDAQND---DEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGI 293
            VRDPKTG+TRV               T                 Y +GA         GY   DD      AP++KIVSGYRGRQIVVRDP++R      PQ   G  LGVRGG VRK NYYDRRG R + YS E               D     R+Y  GRD  Y  +  +  +  G       Y RN +   N     +DL GKVV+VDNLSDDVTT GLADLF MVG VKELRLLYDR+GNPNGSADIVFQ RADAE AIK+L NVPLNNRPMRLSMGNG+
Sbjct:   88 VRDPKTGDTRVIQGGHQRGASVGVGVT-----------------YGNGA------ARGGYRGMDDAAEFEDAPVVKIVSGYRGRQIVVRDPAKRGATDINPQHVAGGPLGVRGGGVRKTNYYDRRGPRDTSYSPERYGDKRSGRGAPYYEDDEEDRRMYGRGRDQ-YDGSQMVAAHGYGDSRYDRDYYRNANAGHNGVPAHDDLTGKVVYVDNLSDDVTTRGLADLFSMVGTVKELRLLYDRQGNPNGSADIVFQHRADAEEAIKSLHNVPLNNRPMRLSMGNGL 348          
BLAST of Gchil3349.t1 vs. uniprot
Match: UPI00053B2972 (THO complex subunit 4C-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B2972)

HSP 1 Score: 71.6 bits (174), Expect = 9.230e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  214 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNG 292
            G  V++ NL   VT   + +L+  +G +K   + +DR G PNGSA++V+ RR+DA  A+K  +NV L+ RPMRL +  G
Sbjct:  103 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAVHFDRNGRPNGSAEVVYMRRSDAMLAMKKYNNVLLDGRPMRLEILGG 181          
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A8J2NV81_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2NV81_9HEXA)

HSP 1 Score: 68.2 bits (165), Expect = 1.150e-9
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:  217 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGN 291
            + + NL   V+   + +LFG VG ++   + YDR G   G AD+ F+RR DA+AAI+  D VPL+ RPM +S  N
Sbjct:  112 ITISNLHYGVSDADIIELFGEVGNIRYASVHYDRSGRSMGKADVTFERRVDAQAAIQQYDGVPLDGRPMAISWAN 186          
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A834LPE5_RHOSS (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834LPE5_RHOSS)

HSP 1 Score: 67.8 bits (164), Expect = 1.340e-9
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  214 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 289
            G  +F+ NL   V+   + +LF  VG VK   + YDR G   G+A++VF RR DAEAA+K  +NV L+ +PM++ +
Sbjct:   93 GTKLFISNLDYGVSGEDVKELFAEVGDVKRYSIHYDRSGRSKGTAEVVFSRRKDAEAAVKRYNNVQLDGKPMKIEI 168          
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A0M0JT49_9EUKA (Tho complex subunit 4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JT49_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.340e-9
Identity = 32/80 (40.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:  214 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGI 293
            G  V V NL+ +VT+  + +LFG +GA+K + LL   +G+  G A +VF+R+ADAE A++  + VPL+ RP+++S+ + +
Sbjct:   85 GTTVKVANLAFNVTSEDIEELFGEIGALKSVSLLTKEDGSSRGMALVVFKRKADAETALEKYNGVPLDGRPLKISLQSNL 164          
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A2I4DVX9_JUGRE (THO complex subunit 4D-like n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DVX9_JUGRE)

HSP 1 Score: 68.2 bits (165), Expect = 1.520e-9
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 0
Query:  214 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 289
            G  +++ NL   VT   + +LF  +G +K   + YD+ G PNGSA++V+ RR+DA AA+K  +NV L+ +PMR+ +
Sbjct:   95 GTKLYISNLDYGVTNEDIRELFCEIGDLKRYAVHYDKNGRPNGSAEVVYTRRSDAVAALKRYNNVLLDGKPMRIEI 170          
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A396IQW2_MEDTR (Putative chromatin target of PRMT1 protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IQW2_MEDTR)

HSP 1 Score: 65.5 bits (158), Expect = 5.130e-9
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 0
Query:  217 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 289
            ++V NL   VT   + +LF  +G +K   + YD+ G+P GSA++V+ RR+DA AA+K  +NV L+ +PM++ +
Sbjct:   31 LYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEI 103          
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A834HD54_RHOSS (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834HD54_RHOSS)

HSP 1 Score: 65.9 bits (159), Expect = 5.520e-9
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  214 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 289
            G  ++V NL   V+   + +LF  VG +K   + YDR G   G+A++VF RR DA+AA+K  +NV L+ +PM++ +
Sbjct:   82 GTKLYVSNLDYGVSNDDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRQDAQAAVKRYNNVQLDGKPMKIEV 157          
BLAST of Gchil3349.t1 vs. uniprot
Match: A0A1X6P4P6_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4P6_PORUM)

HSP 1 Score: 66.6 bits (161), Expect = 6.030e-9
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0
Query:  199 RRNRSDAQNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 289
            R+  + A N  +  AG  + V NL   VT   + DLF  VG ++   ++YD  GN  G A++VF RR DA  +IK  + VPL+N+P+R+S+
Sbjct:  118 RKAAAAAANASKANAGCKIVVHNLHHGVTNGDINDLFSGVGKLQRALVIYDVRGNSTGVAEVVFARRDDALESIKRYNGVPLDNKPLRISL 208          
The following BLAST results are available for this feature:
BLAST of Gchil3349.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPV7_9FLOR4.500e-12970.65THO complex subunit 4C n=1 Tax=Gracilariopsis chor... [more]
R7Q7Q7_CHOCR2.520e-6450.53THO complex subunit 4-like n=1 Tax=Chondrus crispu... [more]
UPI00053B29729.230e-1141.77THO complex subunit 4C-like n=3 Tax=Camelina sativ... [more]
A0A8J2NV81_9HEXA1.150e-942.67Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A834LPE5_RHOSS1.340e-942.11RRM domain-containing protein n=2 Tax=Rhododendron... [more]
A0A0M0JT49_9EUKA1.340e-940.00Tho complex subunit 4 n=1 Tax=Chrysochromulina tob... [more]
A0A2I4DVX9_JUGRE1.520e-940.79THO complex subunit 4D-like n=3 Tax=Juglandaceae T... [more]
A0A396IQW2_MEDTR5.130e-939.73Putative chromatin target of PRMT1 protein n=1 Tax... [more]
A0A834HD54_RHOSS5.520e-939.47RRM domain-containing protein n=2 Tax=Rhododendron... [more]
A0A1X6P4P6_PORUM6.030e-939.56RRM domain-containing protein n=1 Tax=Porphyra umb... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 216..288
e-value: 3.3E-15
score: 66.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 217..285
e-value: 1.3E-12
score: 47.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 215..292
score: 15.050424
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 136..292
e-value: 2.9E-19
score: 71.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..155
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 122..289
NoneNo IPR availableCDDcd12418RRM_Aly_REF_likecoord: 216..289
e-value: 2.65821E-21
score: 83.4183
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 197..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:311558..312439 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3349.t1Gchil3349.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000168_pilon 311558..312439 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3349.t1 ID=Gchil3349.t1|Name=Gchil3349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=294bp
MLDHHESTAPPPPYPSSFRRRPIVVRDPKTGETRVVGGGGGGGGGGRRPT
TLPSSSGAPSPSPPSSYRYRSGADSEYDRRTNGYPPFDDQGRAPIMKIVS
GYRGRQIVVRDPSRRMQPQAPPQGASLGVRGGVRKNYYDRRGTRSSPYSE
EYEEERRNDYFEEDDDDRLYSHGRDNDYARTHHMNEYERGFEPQHGYYRR
NRSDAQNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDR
EGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf