Gchil3349.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3349.t1
Unique Name	Gchil3349.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:311558..312439 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	90675.XP_010415171.1
PFAMs	FoP_duplication,RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12881
KEGG Pathway	ko03013,ko03015,ko03040,ko05168,map03013,map03015,map03040,map05168
KEGG Module	M00406,M00430
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
Evalue	8.45e-12
EggNOG OGs	KOG0533@1\|root,KOG0533@2759\|Eukaryota,37MMS@33090\|Viridiplantae,3GG6X@35493\|Streptophyta,3HXVP@3699\|Brassicales
Description	Tho complex subunit
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3349	Gchil3349	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 311558..312439 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3349.t1.start1	Gchil3349.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 311558..311560 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3349.t1.CDS1	Gchil3349.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 311558..312439 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3349.t1.exon1	Gchil3349.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 311558..312439 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3349.t1.stop1	Gchil3349.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 312437..312439 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3349.t1	Gchil3349.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 311558..312439 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:311558..312439+
coding sequence from alignment at tig00000168_pilon:311558..312439+

mRNA sequence

>Gchil3349.t1 ID=Gchil3349.t1|Name=Gchil3349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=294bp
MLDHHESTAPPPPYPSSFRRRPIVVRDPKTGETRVVGGGGGGGGGGRRPT
TLPSSSGAPSPSPPSSYRYRSGADSEYDRRTNGYPPFDDQGRAPIMKIVS
GYRGRQIVVRDPSRRMQPQAPPQGASLGVRGGVRKNYYDRRGTRSSPYSE
EYEEERRNDYFEEDDDDRLYSHGRDNDYARTHHMNEYERGFEPQHGYYRR
NRSDAQNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDR
EGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGI*

spliced messenger RNA

>Gchil3349.t1 ID=Gchil3349.t1|Name=Gchil3349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000168_pilon:311558..312439+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGACCACCACGAGTCCACTGCCCCACCGCCGCCGTACCCTTCTTC
TTTTCGTCGTCGCCCCATTGTGGTGCGTGACCCTAAAACGGGAGAGACGC
GCGTTGTcggcggcggcggcggcggcggcggcggcggcAGACGTCCCACT
ACTTTACCATCCTCGTCTGGCGCCCCTTCGCCATCTCCTCCCTCTTCATA
CCGTTATCGTTCCGGTGCCGACTCTGAATATGACCGTCGTACGAATGGTT
ATCCTCCCTTCGATGACCAGGGACGCGCGCCGATCATGAAGATTGTGTCC
GGCTATCGCGGTCGCCAGATTGTGGTGCGCGACCCTTCGCGTAGAATGCA
GCCACAGGCCCCACCGCAAGGCGCCAGTCTAGGAGTTCGCGGAGGCGTTC
GGAAAAATTACTATGACCGGAGAGGAACTAGATCTTCCCCGTATTCAGAA
GAATATGAAGAGGAGCGGCGCAATGACTACTTTGAGGAAGATGACGATGA
TAGATTATATTCGCATGGACGCGATAACGATTACGCAAGGACTCATCACA
TGAATGAGTATGAACGCGGATTTGAACCACAGCATGGTTATTACAGGAGA
AATCGCTCCGACGCTCAGAATGATGATGAGGACCTTGCAGGTAAGGTTGT
TTTCGTTGACAATCTTAGTGACGATGTGACAACTACCGGGTTGGCAGATC
TGTTTGGAATGGTTGGCGCAGTCAAGGAACTTCGCCTCTTGTATGATCGC
GAGGGGAATCCCAATGGCTCGGCGGATATCGTTTTCCAGAGGCGCGCAGA
TGCAGAAGCAGCCATCAAAACTCTGGACAATGTACCGCTTAACAACCGCC
CGATGCGTCTTAGCATGGGTAATGGAATCTGA

protein sequence of Gchil3349.t1

>Gchil3349.t1 ID=Gchil3349.t1|Name=Gchil3349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=294bp
MLDHHESTAPPPPYPSSFRRRPIVVRDPKTGETRVVGGGGGGGGGGRRPT
TLPSSSGAPSPSPPSSYRYRSGADSEYDRRTNGYPPFDDQGRAPIMKIVS
GYRGRQIVVRDPSRRMQPQAPPQGASLGVRGGVRKNYYDRRGTRSSPYSE
EYEEERRNDYFEEDDDDRLYSHGRDNDYARTHHMNEYERGFEPQHGYYRR
NRSDAQNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDR
EGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGI*

mRNA from alignment at tig00000168_pilon:311558..312439+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3349.t1 ID=Gchil3349.t1|Name=Gchil3349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000168_pilon:311558..312439+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGGACCACCACGAGTCCACTGCCCCACCGCCGCCGTACCCTTCTTC
TTTTCGTCGTCGCCCCATTGTGGTGCGTGACCCTAAAACGGGAGAGACGC
GCGTTGTcggcggcggcggcggcggcggcggcggcggcAGACGTCCCACT
ACTTTACCATCCTCGTCTGGCGCCCCTTCGCCATCTCCTCCCTCTTCATA
CCGTTATCGTTCCGGTGCCGACTCTGAATATGACCGTCGTACGAATGGTT
ATCCTCCCTTCGATGACCAGGGACGCGCGCCGATCATGAAGATTGTGTCC
GGCTATCGCGGTCGCCAGATTGTGGTGCGCGACCCTTCGCGTAGAATGCA
GCCACAGGCCCCACCGCAAGGCGCCAGTCTAGGAGTTCGCGGAGGCGTTC
GGAAAAATTACTATGACCGGAGAGGAACTAGATCTTCCCCGTATTCAGAA
GAATATGAAGAGGAGCGGCGCAATGACTACTTTGAGGAAGATGACGATGA
TAGATTATATTCGCATGGACGCGATAACGATTACGCAAGGACTCATCACA
TGAATGAGTATGAACGCGGATTTGAACCACAGCATGGTTATTACAGGAGA
AATCGCTCCGACGCTCAGAATGATGATGAGGACCTTGCAGGTAAGGTTGT
TTTCGTTGACAATCTTAGTGACGATGTGACAACTACCGGGTTGGCAGATC
TGTTTGGAATGGTTGGCGCAGTCAAGGAACTTCGCCTCTTGTATGATCGC
GAGGGGAATCCCAATGGCTCGGCGGATATCGTTTTCCAGAGGCGCGCAGA
TGCAGAAGCAGCCATCAAAACTCTGGACAATGTACCGCTTAACAACCGCC
CGATGCGTCTTAGCATGGGTAATGGAATCTGA

Coding sequence (CDS) from alignment at tig00000168_pilon:311558..312439+

>Gchil3349.t1 ID=Gchil3349.t1|Name=Gchil3349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000168_pilon:311558..312439+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGGACCACCACGAGTCCACTGCCCCACCGCCGCCGTACCCTTCTTC
TTTTCGTCGTCGCCCCATTGTGGTGCGTGACCCTAAAACGGGAGAGACGC
GCGTTGTcggcggcggcggcggcggcggcggcggcggcAGACGTCCCACT
ACTTTACCATCCTCGTCTGGCGCCCCTTCGCCATCTCCTCCCTCTTCATA
CCGTTATCGTTCCGGTGCCGACTCTGAATATGACCGTCGTACGAATGGTT
ATCCTCCCTTCGATGACCAGGGACGCGCGCCGATCATGAAGATTGTGTCC
GGCTATCGCGGTCGCCAGATTGTGGTGCGCGACCCTTCGCGTAGAATGCA
GCCACAGGCCCCACCGCAAGGCGCCAGTCTAGGAGTTCGCGGAGGCGTTC
GGAAAAATTACTATGACCGGAGAGGAACTAGATCTTCCCCGTATTCAGAA
GAATATGAAGAGGAGCGGCGCAATGACTACTTTGAGGAAGATGACGATGA
TAGATTATATTCGCATGGACGCGATAACGATTACGCAAGGACTCATCACA
TGAATGAGTATGAACGCGGATTTGAACCACAGCATGGTTATTACAGGAGA
AATCGCTCCGACGCTCAGAATGATGATGAGGACCTTGCAGGTAAGGTTGT
TTTCGTTGACAATCTTAGTGACGATGTGACAACTACCGGGTTGGCAGATC
TGTTTGGAATGGTTGGCGCAGTCAAGGAACTTCGCCTCTTGTATGATCGC
GAGGGGAATCCCAATGGCTCGGCGGATATCGTTTTCCAGAGGCGCGCAGA
TGCAGAAGCAGCCATCAAAACTCTGGACAATGTACCGCTTAACAACCGCC
CGATGCGTCTTAGCATGGGTAATGGAATCTGA