Gchil3339.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3339.t1
Unique NameGchil3339.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length654
Homology
BLAST of Gchil3339.t1 vs. uniprot
Match: A0A2V3IK20_9FLOR (E3 ubiquitin-protein ligase RNF38 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK20_9FLOR)

HSP 1 Score: 184 bits (466), Expect = 7.340e-52
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 0
Query:  540 VEIHYFHGLQHPDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRIAPSRPRRRCARH 652
            +EIHY  GL H D +LDYE LIRLD+QL+REKNRA+ DQI+SLP +KAT EDKE+RCCICMCDVEEGE LRVLPC+HKYH+SCIDEWLTYNGCCPVDKKRIAP R R R   H
Sbjct:    1 MEIHYLQGL-HGDRALDYEHLIRLDEQLLREKNRADNDQINSLPTRKATAEDKEVRCCICMCDVEEGEVLRVLPCSHKYHQSCIDEWLTYNGCCPVDKKRIAPRRSRGRGTAH 112          
BLAST of Gchil3339.t1 vs. uniprot
Match: R7QS17_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS17_CHOCR)

HSP 1 Score: 178 bits (452), Expect = 2.260e-44
Identity = 81/99 (81.82%), Postives = 90/99 (90.91%), Query Frame = 0
Query:  555 LDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRIAPSRPRRRCARHS 653
            LDYE LIRLD+QL+R+KNRA+  QIDSLP++KATT DKEIRCC+CMCDVEEGE+LRVLPC+HKYHK CIDEWLTYNGCCPVDKKRIAP R RRRC  HS
Sbjct:  549 LDYENLIRLDEQLMRDKNRADTSQIDSLPMQKATTADKEIRCCVCMCDVEEGEELRVLPCSHKYHKKCIDEWLTYNGCCPVDKKRIAPPRSRRRCPAHS 647          
BLAST of Gchil3339.t1 vs. uniprot
Match: A0A7S1T786_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T786_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 4.740e-14
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 0
Query:  556 DYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRI 640
            DYE L+RLD+++   +  A+   + SLP   AT    E +CCIC+C+ EEGE ++ LPC H +H++C+D WL     CP+DK+ I
Sbjct:  261 DYETLVRLDERIPNNRG-AQATVLQSLPTSLATARMTEEQCCICLCNYEEGETVKRLPCLHVFHQTCVDAWLERQASCPIDKRSI 344          
BLAST of Gchil3339.t1 vs. uniprot
Match: F0ZRJ6_DICPU (RING-type domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZRJ6_DICPU)

HSP 1 Score: 77.4 bits (189), Expect = 1.220e-13
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 0
Query:  554 SLDYERLIRLDDQLIREKNRAERDQIDSLPVKK-----ATTEDKE-----IRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRI 640
            S DY+ L+ LDD +      A   +I  LPV K     AT  +         CCIC+C++E GE++R LPC H +H +CID+WL  N  CPVDKK I
Sbjct:    7 SNDYDLLLSLDDNI--NNKGATNTEIIKLPVHKIDKNQATNPENNGPTTNETCCICLCEMENGEEVRTLPCKHFFHVTCIDQWLKVNKVCPVDKKAI 101          
BLAST of Gchil3339.t1 vs. uniprot
Match: F4PRR3_CAVFA (RING-type domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRR3_CAVFA)

HSP 1 Score: 82.8 bits (203), Expect = 8.870e-13
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 0
Query:  536 GGPPVEIHYFHGLQHPDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRI 640
            G   ++ H+ + +     S DYE L++LD+ +      A+  +I  LP  K  T  K   CCIC+C++E G++++ LPC H +H  CID WL  N  CP+DK+ I
Sbjct:  570 GSQQIDPHHLNLMNRDFTSNDYELLLQLDENV--NNKGAQATEIKQLPTHKIKTGSKIDTCCICLCEMEIGQNVKSLPCTHYFHTECIDNWLKINKICPIDKQSI 672          
BLAST of Gchil3339.t1 vs. uniprot
Match: A0A1R2C6I9_9CILI (RING-type domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C6I9_9CILI)

HSP 1 Score: 72.0 bits (175), Expect = 2.390e-11
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0
Query:  576 RDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRI 640
            ++QI++LP  KA  ED    CCIC+ D++  EDL +LPC HKYH +C+D W      CP+ K RI
Sbjct:   75 KEQIEALPHVKAVDEDS---CCICLDDIKLDEDLTILPCTHKYHSTCVDNWFLIKPLCPICKTRI 136          
BLAST of Gchil3339.t1 vs. uniprot
Match: A0A6P5Y5L8_DURZI (LOW QUALITY PROTEIN: uncharacterized protein LOC111289108 n=4 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5Y5L8_DURZI)

HSP 1 Score: 77.0 bits (188), Expect = 6.300e-11
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0
Query:  548 LQHPDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRI 640
            +QH  +  DYE L+ LDD    +   A  +QI+SLP+ K  T++ E  C IC+     GE +R LPC HK+HK CID WL+    CPV K  I
Sbjct:  677 VQHDFNENDYEMLLALDDNN-HQHGGASTNQINSLPLSKVQTDNFEEACAICLETPTIGETIRHLPCLHKFHKDCIDPWLSRKSSCPVCKSSI 768          
BLAST of Gchil3339.t1 vs. uniprot
Match: V4CC02_LOTGI (RING-type domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4CC02_LOTGI)

HSP 1 Score: 68.9 bits (167), Expect = 8.300e-11
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0
Query:  577 DQIDSLPVKKATTEDK----EIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPV 635
            +QI+ LP+KK    DK    +  C ICMC+ E+ + LR+LPC H +H  C+D+WLT N  CPV
Sbjct:   22 NQINRLPIKKFKKYDKNNSVDEECSICMCEYEDNDCLRILPCFHCFHSGCVDKWLTNNASCPV 84          
BLAST of Gchil3339.t1 vs. uniprot
Match: UPI00126397D1 (uncharacterized protein LOC116107768 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126397D1)

HSP 1 Score: 76.6 bits (187), Expect = 8.310e-11
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
Query:  548 LQHPDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRI 640
            LQ   +  DYE L+ LDD     +N A  +QI+SLP+    TE+ E  C IC+     GE +R LPC HK+HK+CID WL+    CPV K  I
Sbjct:  679 LQRDFNENDYEMLLALDDN--NNQNGASDNQINSLPLSTVQTENLEESCAICLDAPTIGETIRHLPCLHKFHKACIDPWLSRRPSCPVCKSSI 769          
BLAST of Gchil3339.t1 vs. uniprot
Match: UPI001CF94B0A (uncharacterized protein LOC123221077 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF94B0A)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-10
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = 0
Query:  548 LQHPDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICMCDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRI 640
            LQ   +  DYE L+ LDD     +N A   QI+SLP+    TE+ E  C IC+     GE +R LPC HK+HK+CID WL+    CPV K  I
Sbjct:  681 LQRDFNENDYEMLLALDDN--NNQNGASDSQINSLPLSTVQTENLEESCAICLDAPTIGETIRHLPCLHKFHKACIDPWLSRKPSCPVCKSSI 771          
The following BLAST results are available for this feature:
BLAST of Gchil3339.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IK20_9FLOR7.340e-5276.99E3 ubiquitin-protein ligase RNF38 n=1 Tax=Gracilar... [more]
R7QS17_CHOCR2.260e-4481.82RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A7S1T786_9RHOD4.740e-1443.53Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
F0ZRJ6_DICPU1.220e-1343.30RING-type domain-containing protein n=1 Tax=Dictyo... [more]
F4PRR3_CAVFA8.870e-1337.14RING-type domain-containing protein n=1 Tax=Cavend... [more]
A0A1R2C6I9_9CILI2.390e-1147.69RING-type domain-containing protein n=1 Tax=Stento... [more]
A0A6P5Y5L8_DURZI6.300e-1144.09LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
V4CC02_LOTGI8.300e-1147.62RING-type domain-containing protein (Fragment) n=1... [more]
UPI00126397D18.310e-1145.16uncharacterized protein LOC116107768 n=1 Tax=Pista... [more]
UPI001CF94B0A1.100e-1045.16uncharacterized protein LOC123221077 n=1 Tax=Mangi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 557..577
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 395..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..298
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 359..641
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 596..635
e-value: 2.39622E-16
score: 71.1789
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 589..643
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 596..636
e-value: 3.9E-5
score: 33.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 595..635
e-value: 2.9E-9
score: 37.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 596..637
score: 11.058237
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 562..643
e-value: 3.8E-17
score: 63.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:278772..280855 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3339.t1Gchil3339.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000168_pilon 278772..280855 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3339.t1 ID=Gchil3339.t1|Name=Gchil3339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=654bp
MPRSAAVVEDDTDIVVVETVPSSPPRDRHLAPHNVIVLDNSRPPPRTTNS
SIEPIVIDEAPRKRRRRDQSSSHPSSHNPVSHPQHVIIVDDSDSPPHRPS
LIAFRGRETQTSRIERQRIHLHQRNASPSPYEEDIIEMAVSGPRLAPEQP
PPPPPILNSGETLVQPSFSMTPNIPPPANQRQSMPPWPDLNSPFSALNRL
PDSATSTEQLGLHNLQLPSIPAVEPQPRSQSHPTERHYTPHLVELDQILA
RNHRISSHRHRDYRNNTDASQFTPALRPSSVHPSGHLHRHPHRHNPTVSH
RYIHLERDQGGSTGPVLVPGFVRVGAVRREHTSQSNRPSRYSGDATASPY
AASTGFFPPSQPRLNPLRQSDQSDANQFSQNVDSTADHLESRNGNHYAAA
TTNMNTAISDSLNSPAPHGATPLQAPRAQFRRHTHTAHSGAESDGAELAG
YRELRHLQRRRDHYRSRQSPRRMSTARPLPAVSPFANVARNNLLGAQRLQ
RQAAMRARARSQNPVPHRHSHHHITAVLNRMLNQVGGPPVEIHYFHGLQH
PDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICM
CDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRIAPSRPRRRCA
RHS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD