Gchil3253.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3253.t1
Unique NameGchil3253.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length509
Homology
BLAST of Gchil3253.t1 vs. uniprot
Match: R7QTR1_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTR1_CHOCR)

HSP 1 Score: 244 bits (624), Expect = 2.050e-72
Identity = 145/242 (59.92%), Postives = 169/242 (69.83%), Query Frame = 0
Query:  106 LEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHIVAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNTSHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLXXXXXXXXXXXXXXXXXXFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATLACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYI 347
            +E  HGDEQ AR LF RA+  A  P  EAAAWNAWALMEQRKG+I  A KCFVNGL VDP H PL QAFAIFE+KYG KRRARE F+RGAQ N T+HR WIAWA+FEA++D+F++A LLFKAAL+NA G+D ++A+LXXXXXXXXXXXXXXXXXX  +GL R+G+                          ++TL CPGM G   APT+QA          I SARKLF RGA ANP+HAYI
Sbjct:    1 MEALHGDEQKARELFARAIHVARSPHIEAAAWNAWALMEQRKGNIATARKCFVNGLKVDPSHAPLCQAFAIFESKYGLKRRARELFSRGAQFNKTNHRTWIAWANFEANEDNFTKATLLFKAALSNADGDDCVTAILXXXXXXXXXXXXXXXXXXXQQGLTRYGQNXXXXXXXXXXXXXXXXXXXXXXXXXISTLECPGMTGVDAAPTYQAXXXXXXXXXXIGSARKLFARGAEANPKHAYI 242          
BLAST of Gchil3253.t1 vs. uniprot
Match: A0A2V3IS27_9FLOR (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS27_9FLOR)

HSP 1 Score: 221 bits (563), Expect = 3.040e-62
Identity = 161/354 (45.48%), Postives = 187/354 (52.82%), Query Frame = 0
Query:    1 MMAFIPATAPRKLSLHPVRHTTARPSIQMTTAVAPPARVPAPV---LRRPQPAPQWQAPFEK----PAPDPISALQHARTLMAERRYEAARAAFRSLTNSAATSEILRSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHIVAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNTSHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLXXXXXXXXXXXXXXXXXXFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATLACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYI 347
            M AFIP TAP KL L   R      ++++   VA P+         LRRP P PQ + P       P  +P SAL+H R L+++R+Y+AAR AFR +      SE+LRSW  LE SHGDE +ARSLF R+VKAA  P+ EAAAWNAWALMEQRKGHI AA KCF NGL VDP H PL QAF                                                     A+T A+G+DGI+ALLXXXXXXXXXXXXXXXXXX  EGL R+G QCAKILH                   L+TLACPGM G   APT+Q                  F RGA ANP+H YI
Sbjct:    1 MTAFIPPTAPSKLPLRAQRAFPTCSAMRVAATVAAPSAXXXXXXXXLRRPMPPPQRRKPASSETHHPHVEPSSALRHVRALLSQRQYDAARDAFRDIAQIDCCSEVLRSWAFLEASHGDEHLARSLFIRSVKAASLPSMEAAAWNAWALMEQRKGHIAAARKCFENGLRVDPTHPPLCQAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVTRAEGDDGIAALLXXXXXXXXXXXXXXXXXXXXEGLSRYGNQCAKILHXXXXXXXXXXXXXXXXXXXLSTLACPGMSGTNTAPTYQXXXXXXXXXXXXXXXXXXFARGAQANPQHVYI 354          
BLAST of Gchil3253.t1 vs. uniprot
Match: A0A7S1ESH8_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESH8_9RHOD)

HSP 1 Score: 129 bits (323), Expect = 2.660e-28
Identity = 90/288 (31.25%), Postives = 134/288 (46.53%), Query Frame = 0
Query:   68 LQHARTLMAERRYEAARAAFRSLTNSAATS-EILRSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHIVAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNTSHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLXXXXXXXXXXXXXXXXXXFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATLACPG-------MCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYI 347
            +   R L+  ++   AR   + L +S      +LR WG LEG +G+  + RSLF+ A+K+A   A EAAAW+AWA++EQR G++  A KCFVNGL  DP H+P+ Q+FAI                                      + + + AR L+ +A+  A  ED + A L                  + E L++H K   K LH+   +E+H  ++  +  LF   L C           G   A  +QAWA+ EK+   +  AR L  +GA A+P H+YI
Sbjct:  115 MDQVRALLHVKQVGKARDILQKLADSTNRDPRVLRMWGWLEGRNGNLALGRSLFSEAIKSASG-ADEAAAWSAWAMIEQRAGNLSGARKCFVNGLRADPAHVPIYQSFAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELNHATARSLYWSAIKAASPED-VVAKLAYAQFEQKSKKIDLSRAMYREILEQHPKN-VKALHSLANLEAHSGDYTLAENLFKKCLKCHEEHDVVGESDGSAKAAVYQAWALMEKRRRRLDKARMLLAKGAEADPTHSYI 399          
BLAST of Gchil3253.t1 vs. uniprot
Match: A0A7S2ZRT2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRT2_9RHOD)

HSP 1 Score: 126 bits (316), Expect = 1.140e-27
Identity = 105/278 (37.77%), Postives = 135/278 (48.56%), Query Frame = 0
Query:   71 ARTLMAERRYEAARAAFRS-LTNSAATSEILRSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHIVAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNTSHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLXXXXXXXXXXXXXXXXXXFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATLACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYI 347
            AR L  E R E AR  F S +      S +LRSW  +E      + AR LF RAV+    P   AAAW AWAL EQR+G++  A + F +G+  D  H+PL  +FA FE K+GSK  AR   A                                                  XXXXXXXXXXXXXXXXXX    L     +C K LHA   +E+  + + R+R+++   L    +    +AP +QAWA+ EKKAGN+  AR LFKRG   +P+H YI
Sbjct:   77 ARKLCREGRIEEARGIFHSAVVEEGEISSVLRSWAWMEYRQRKMETARGLFKRAVECG-SPEEAAAAWCAWALAEQREGNLSTAAEYFRSGMRADCTHVPLFASFATFEGKHGSKELAR---ALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKDPECFKALHALAKLETSAKQYGRARDMYRRCLKSTSLVNENIAPVYQAWALMEKKAGNLDEARNLFKRGLEHDPKHVYI 350          
BLAST of Gchil3253.t1 vs. uniprot
Match: A0A7S0G1B3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1B3_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 6.430e-23
Identity = 102/278 (36.69%), Postives = 124/278 (44.60%), Query Frame = 0
Query:   71 ARTLMAERRYEAARAAFRS-LTNSAATSEILRSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHIVAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNTSHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLXXXXXXXXXXXXXXXXXXFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATLACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYI 347
            AR L  E R E AR  F S +      S +LR W  +E      + AR LF RAV     P   AAAW AW L EQR+GH+  A + F NG+  D  H+PL  AFA FE K+GSK  AR  F RG  L   +                                         XXXXXXXXXXXXXXXXXX                               +R+++   L C  +    +AP +QAWA+ EKKAGN+  AR LFKRG   +P+H YI
Sbjct:   83 ARKLCREGRIEEARGIFYSAVVEEGDISSVLRPWAWMEYRQRRMETARGLFQRAVDCG-SPEEAAAAWCAWGLAEQREGHLSTAAEYFRNGMRADCTHVPLFAAFATFEGKHGSKELARALFQRGTAL---APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDMYRRCLKCTSLVNENIAPVYQAWALMEKKAGNLDEARHLFKRGLEHDPKHVYI 356          
BLAST of Gchil3253.t1 vs. uniprot
Match: A0A1X6P8Z8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8Z8_PORUM)

HSP 1 Score: 105 bits (262), Expect = 2.300e-20
Identity = 114/304 (37.50%), Postives = 137/304 (45.07%), Query Frame = 0
Query:   60 PAPDPISALQHARTLMAE--RRYEAARAAFRSLTNSAA--------------TSEILRSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHIVAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNTSHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLXXXXXXXXXXXXXXXXXXFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATLACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYI 347
            P P  I   +  RT  AE   + +  RAA +S   +AA              +S +LR+ G L  +  D ++ARSLFT AV+ A  P +EAAAW AWALMEQR G+   A KCFVNGL  D  H PL QAF                                       ++D+   ARLL+K A   A   D     LXXXXXXXXXXXXXXXXXX  E +       AK LHA                   ATLA  G+      PTFQAWA  E++AG    A  L  RGA  +    YI
Sbjct:  178 PLPPGIGVAKPVRTASAELDAKLDLVRAALKSGDTAAAKTTLASVDTDHEALSSGVLRAAGWLHATVDDVEVARSLFTAAVERADSPPSEAAAWAAWALMEQRLGNTATARKCFVNGLRADVGHAPLCQAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDNIPVARLLYKTASGVADAGDP-GPRLXXXXXXXXXXXXXXXXXXXREVVAA-DPASAKALHAXXXXXXXXXXXXXXXXXXXATLAIEGLPPAAAVPTFQAWACMEERAGAPDVAAALLARGAALDGSDPYI 479          
The following BLAST results are available for this feature:
BLAST of Gchil3253.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
R7QTR1_CHOCR2.050e-7259.92TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A2V3IS27_9FLOR3.040e-6245.48PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
A0A7S1ESH8_9RHOD2.660e-2831.25Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S2ZRT2_9RHOD1.140e-2737.77Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G1B3_9RHOD6.430e-2336.69Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6P8Z8_PORUM2.300e-2037.50Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 388..408
NoneNo IPR availablePFAMPF13428TPR_14coord: 449..489
e-value: 1.7E-5
score: 25.2
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 134..167
e-value: 270.0
score: 2.3
coord: 447..480
e-value: 0.21
score: 20.7
coord: 202..235
e-value: 370.0
score: 1.2
coord: 238..271
e-value: 120.0
score: 5.4
coord: 97..130
e-value: 240.0
score: 2.9
coord: 345..378
e-value: 60.0
score: 8.1
coord: 379..412
e-value: 11.0
score: 14.7
coord: 311..344
e-value: 110.0
score: 5.8
coord: 413..446
e-value: 120.0
score: 5.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 379..412
score: 8.6144
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 447..480
score: 9.1454
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 325..357
e-value: 18.0
score: 13.5
coord: 461..493
e-value: 1.3E-5
score: 34.7
coord: 182..214
e-value: 0.14
score: 21.2
coord: 216..250
e-value: 15.0
score: 14.1
coord: 393..425
e-value: 80.0
score: 8.8
coord: 359..391
e-value: 4.2
score: 16.3
coord: 252..285
e-value: 650.0
score: 2.1
coord: 111..146
e-value: 0.61
score: 19.1
coord: 427..459
e-value: 0.005
score: 26.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 270..502
e-value: 5.3E-35
score: 123.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 65..253
e-value: 2.0E-25
score: 91.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 83..249
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 243..484
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 313..405
coord: 240..296
coord: 396..498
coord: 77..268

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1238292..1239818 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3253.t1Gchil3253.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004382_pilon 1238292..1239818 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3253.t1 ID=Gchil3253.t1|Name=Gchil3253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MMAFIPATAPRKLSLHPVRHTTARPSIQMTTAVAPPARVPAPVLRRPQPA
PQWQAPFEKPAPDPISALQHARTLMAERRYEAARAAFRSLTNSAATSEIL
RSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHI
VAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNT
SHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLAWAKFEER
QRKWRKARDLFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATL
ACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYIWQA
WGIMEHRCRRPDVARECFKKGTKVDPYNAPTWSAWARMEAEEGNLEEARR
LFESATRADPHHAISWQAWGCVEGRHGHIEKARCLFEEAVTADPKCAPAW
QAWARLEQKAGNFDRARSLFQKGIDADPTHISVWQAWSEMEEKLGEWNNG
PACTLLEP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like