Gchil3253.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3253.t1
Unique NameGchil3253.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length509
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1238292..1239818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002508049.1
PFAMsSuf,TPR_16,TPR_8
Max annot lvl3041|Chlorophyta
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Evalue5.6e-10
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota,37VY4@33090|Viridiplantae,34IBE@3041|Chlorophyta
DescriptionHAT (Half-A-TPR) repeats
COG categoryS
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3253Gchil3253Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1238292..1239818 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3253.t1.start1Gchil3253.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1238292..1238294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3253.t1.CDS1Gchil3253.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1238292..1239818 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3253.t1.exon1Gchil3253.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1238292..1239818 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3253.t1.stop1Gchil3253.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1239816..1239818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3253.t1Gchil3253.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1238292..1239818 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3253.t1 ID=Gchil3253.t1|Name=Gchil3253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp
MMAFIPATAPRKLSLHPVRHTTARPSIQMTTAVAPPARVPAPVLRRPQPA
PQWQAPFEKPAPDPISALQHARTLMAERRYEAARAAFRSLTNSAATSEIL
RSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHI
VAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNT
SHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLAWAKFEER
QRKWRKARDLFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATL
ACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYIWQA
WGIMEHRCRRPDVARECFKKGTKVDPYNAPTWSAWARMEAEEGNLEEARR
LFESATRADPHHAISWQAWGCVEGRHGHIEKARCLFEEAVTADPKCAPAW
QAWARLEQKAGNFDRARSLFQKGIDADPTHISVWQAWSEMEEKLGEWNNG
PACTLLEP*
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spliced messenger RNA

>Gchil3253.t1 ID=Gchil3253.t1|Name=Gchil3253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00004382_pilon:1238292..1239818+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCATTCATCCCGGCCACTGCACCAAGAAAGCTCTCCCTTCACCC
CGTCCGCCACACTACAGCTCGTCCTAGCATACAAATGACAACTGCTGTGG
CACCCCCTGCCCGAGTCCCCGCCCCGGTTCTCCGTCGCCCTCAGCCGGCT
CCACAATGGCAAGCCCCGTTTGAGAAACCGGCCCCGGATCCAATTTCAGC
GCTGCAACACGCTCGCACCCTTATGGCAGAGCGTCGCTACGAAGCAGCAC
GAGCCGCCTTCCGCTCTCTGACCAACTCTGCTGCTACTTCTGAAATTCTG
CGCTCATGGGGGTGTCTAGAAGGCTCTCATGGTGACGAACAGATTGCTCG
CAGTTTGTTTACCCGCGCGGTAAAGGCCGCACCCGATCCGGCTACCGAGG
CTGCGGCGTGGAATGCATGGGCGCTTATGGAGCAGAGGAAAGGACACATC
GTAGCCGCCACCAAGTGTTTCGTCAACGGCTTGGGCGTGGACCCGTGCCA
CCTTCCACTTATTCAGGCCTTTGCAATTTTTGAAGCCAAGTACGGAAGTA
AGCGAAGAGCTCGTGAATTTTTTGCTAGAGGGGCACAGCTCAACAATACT
TCACATCGTATCTGGATTGCCTGGGCTCATTTTGAAGCTTCCCAAGATGA
CTTTTCCCGAGCCCGGTTATTGTTTAAGGCCGCCTTGACGAATGCTAAGG
GCGAGGATGGAATCTCTGCCTTGTTGGCATGGGCCAAGTTTGAAGAACGA
CAAAGAAAATGGCGCAAGGCAAGAGATCTTTTCCACGAAGGTCTCCAACG
TCACGGCAAACAATGCGCCAAGATTCTACATGCGTGGGGCACCATGGAAA
GCCACTGCCGTAATTTTGAGCGCTCTCGAGAGCTGTTTTTGGCCACTCTG
GCTTGCCCAGGTATGTGTGGTCCCCAAGTGGCGCCCACTTTTCAAGCGTG
GGCTATAGCTGAAAAGAAGGCTGGGAACATCTCTAGCGCAAGGAAGCTTT
TCAAGCGGGGTGCTCACGCAAATCCACGACATGCCTACATCTGGCAAGCT
TGGGGTATCATGGAACATCGCTGCCGCAGGCCAGATGTAGCCAGAGAGTG
TTTCAAGAAAGGTACAAAGGTGGATCCGTACAACGCTCCTACTTGGAGTG
CTTGGGCAAGAATGGAAGCCGAAGAAGGTAACTTGGAGGAAGCCCGGCGT
TTGTTCGAATCAGCCACCCGAGCTGATCCGCACCACGCCATCAGTTGGCA
AGCTTGGGGTTGCGTAGAGGGGCGGCATGGACACATCGAAAAAGCACGAT
GCCTGTTCGAGGAAGCGGTGACTGCCGACCCTAAATGTGCGCCTGCTTGG
CAGGCATGGGCTCGTTTGGAACAAAAGGCAGGCAACTTTGACAGAGCTCG
GTCTTTGTTTCAAAAGGGCATTGACGCTGACCCTACGCACATTTCTGTGT
GGCAGGCGTGGTCGGAAATGGAGGAGAAGTTGGGTGAATGGAATAATGGT
CCGGCATGTACTCTTCTAGAGCCCTGA
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protein sequence of Gchil3253.t1

>Gchil3253.t1 ID=Gchil3253.t1|Name=Gchil3253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MMAFIPATAPRKLSLHPVRHTTARPSIQMTTAVAPPARVPAPVLRRPQPA
PQWQAPFEKPAPDPISALQHARTLMAERRYEAARAAFRSLTNSAATSEIL
RSWGCLEGSHGDEQIARSLFTRAVKAAPDPATEAAAWNAWALMEQRKGHI
VAATKCFVNGLGVDPCHLPLIQAFAIFEAKYGSKRRAREFFARGAQLNNT
SHRIWIAWAHFEASQDDFSRARLLFKAALTNAKGEDGISALLAWAKFEER
QRKWRKARDLFHEGLQRHGKQCAKILHAWGTMESHCRNFERSRELFLATL
ACPGMCGPQVAPTFQAWAIAEKKAGNISSARKLFKRGAHANPRHAYIWQA
WGIMEHRCRRPDVARECFKKGTKVDPYNAPTWSAWARMEAEEGNLEEARR
LFESATRADPHHAISWQAWGCVEGRHGHIEKARCLFEEAVTADPKCAPAW
QAWARLEQKAGNFDRARSLFQKGIDADPTHISVWQAWSEMEEKLGEWNNG
PACTLLEP*
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mRNA from alignment at tig00004382_pilon:1238292..1239818+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3253.t1 ID=Gchil3253.t1|Name=Gchil3253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00004382_pilon:1238292..1239818+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCATTCATCCCGGCCACTGCACCAAGAAAGCTCTCCCTTCACCC
CGTCCGCCACACTACAGCTCGTCCTAGCATACAAATGACAACTGCTGTGG
CACCCCCTGCCCGAGTCCCCGCCCCGGTTCTCCGTCGCCCTCAGCCGGCT
CCACAATGGCAAGCCCCGTTTGAGAAACCGGCCCCGGATCCAATTTCAGC
GCTGCAACACGCTCGCACCCTTATGGCAGAGCGTCGCTACGAAGCAGCAC
GAGCCGCCTTCCGCTCTCTGACCAACTCTGCTGCTACTTCTGAAATTCTG
CGCTCATGGGGGTGTCTAGAAGGCTCTCATGGTGACGAACAGATTGCTCG
CAGTTTGTTTACCCGCGCGGTAAAGGCCGCACCCGATCCGGCTACCGAGG
CTGCGGCGTGGAATGCATGGGCGCTTATGGAGCAGAGGAAAGGACACATC
GTAGCCGCCACCAAGTGTTTCGTCAACGGCTTGGGCGTGGACCCGTGCCA
CCTTCCACTTATTCAGGCCTTTGCAATTTTTGAAGCCAAGTACGGAAGTA
AGCGAAGAGCTCGTGAATTTTTTGCTAGAGGGGCACAGCTCAACAATACT
TCACATCGTATCTGGATTGCCTGGGCTCATTTTGAAGCTTCCCAAGATGA
CTTTTCCCGAGCCCGGTTATTGTTTAAGGCCGCCTTGACGAATGCTAAGG
GCGAGGATGGAATCTCTGCCTTGTTGGCATGGGCCAAGTTTGAAGAACGA
CAAAGAAAATGGCGCAAGGCAAGAGATCTTTTCCACGAAGGTCTCCAACG
TCACGGCAAACAATGCGCCAAGATTCTACATGCGTGGGGCACCATGGAAA
GCCACTGCCGTAATTTTGAGCGCTCTCGAGAGCTGTTTTTGGCCACTCTG
GCTTGCCCAGGTATGTGTGGTCCCCAAGTGGCGCCCACTTTTCAAGCGTG
GGCTATAGCTGAAAAGAAGGCTGGGAACATCTCTAGCGCAAGGAAGCTTT
TCAAGCGGGGTGCTCACGCAAATCCACGACATGCCTACATCTGGCAAGCT
TGGGGTATCATGGAACATCGCTGCCGCAGGCCAGATGTAGCCAGAGAGTG
TTTCAAGAAAGGTACAAAGGTGGATCCGTACAACGCTCCTACTTGGAGTG
CTTGGGCAAGAATGGAAGCCGAAGAAGGTAACTTGGAGGAAGCCCGGCGT
TTGTTCGAATCAGCCACCCGAGCTGATCCGCACCACGCCATCAGTTGGCA
AGCTTGGGGTTGCGTAGAGGGGCGGCATGGACACATCGAAAAAGCACGAT
GCCTGTTCGAGGAAGCGGTGACTGCCGACCCTAAATGTGCGCCTGCTTGG
CAGGCATGGGCTCGTTTGGAACAAAAGGCAGGCAACTTTGACAGAGCTCG
GTCTTTGTTTCAAAAGGGCATTGACGCTGACCCTACGCACATTTCTGTGT
GGCAGGCGTGGTCGGAAATGGAGGAGAAGTTGGGTGAATGGAATAATGGT
CCGGCATGTACTCTTCTAGAGCCCTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1238292..1239818+

>Gchil3253.t1 ID=Gchil3253.t1|Name=Gchil3253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00004382_pilon:1238292..1239818+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCATTCATCCCGGCCACTGCACCAAGAAAGCTCTCCCTTCACCC
CGTCCGCCACACTACAGCTCGTCCTAGCATACAAATGACAACTGCTGTGG
CACCCCCTGCCCGAGTCCCCGCCCCGGTTCTCCGTCGCCCTCAGCCGGCT
CCACAATGGCAAGCCCCGTTTGAGAAACCGGCCCCGGATCCAATTTCAGC
GCTGCAACACGCTCGCACCCTTATGGCAGAGCGTCGCTACGAAGCAGCAC
GAGCCGCCTTCCGCTCTCTGACCAACTCTGCTGCTACTTCTGAAATTCTG
CGCTCATGGGGGTGTCTAGAAGGCTCTCATGGTGACGAACAGATTGCTCG
CAGTTTGTTTACCCGCGCGGTAAAGGCCGCACCCGATCCGGCTACCGAGG
CTGCGGCGTGGAATGCATGGGCGCTTATGGAGCAGAGGAAAGGACACATC
GTAGCCGCCACCAAGTGTTTCGTCAACGGCTTGGGCGTGGACCCGTGCCA
CCTTCCACTTATTCAGGCCTTTGCAATTTTTGAAGCCAAGTACGGAAGTA
AGCGAAGAGCTCGTGAATTTTTTGCTAGAGGGGCACAGCTCAACAATACT
TCACATCGTATCTGGATTGCCTGGGCTCATTTTGAAGCTTCCCAAGATGA
CTTTTCCCGAGCCCGGTTATTGTTTAAGGCCGCCTTGACGAATGCTAAGG
GCGAGGATGGAATCTCTGCCTTGTTGGCATGGGCCAAGTTTGAAGAACGA
CAAAGAAAATGGCGCAAGGCAAGAGATCTTTTCCACGAAGGTCTCCAACG
TCACGGCAAACAATGCGCCAAGATTCTACATGCGTGGGGCACCATGGAAA
GCCACTGCCGTAATTTTGAGCGCTCTCGAGAGCTGTTTTTGGCCACTCTG
GCTTGCCCAGGTATGTGTGGTCCCCAAGTGGCGCCCACTTTTCAAGCGTG
GGCTATAGCTGAAAAGAAGGCTGGGAACATCTCTAGCGCAAGGAAGCTTT
TCAAGCGGGGTGCTCACGCAAATCCACGACATGCCTACATCTGGCAAGCT
TGGGGTATCATGGAACATCGCTGCCGCAGGCCAGATGTAGCCAGAGAGTG
TTTCAAGAAAGGTACAAAGGTGGATCCGTACAACGCTCCTACTTGGAGTG
CTTGGGCAAGAATGGAAGCCGAAGAAGGTAACTTGGAGGAAGCCCGGCGT
TTGTTCGAATCAGCCACCCGAGCTGATCCGCACCACGCCATCAGTTGGCA
AGCTTGGGGTTGCGTAGAGGGGCGGCATGGACACATCGAAAAAGCACGAT
GCCTGTTCGAGGAAGCGGTGACTGCCGACCCTAAATGTGCGCCTGCTTGG
CAGGCATGGGCTCGTTTGGAACAAAAGGCAGGCAACTTTGACAGAGCTCG
GTCTTTGTTTCAAAAGGGCATTGACGCTGACCCTACGCACATTTCTGTGT
GGCAGGCGTGGTCGGAAATGGAGGAGAAGTTGGGTGAATGGAATAATGGT
CCGGCATGTACTCTTCTAGAGCCCTGA
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