Gchil3225.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3225.t1
Unique NameGchil3225.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1170924..1171763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707208.1
PFAMstRNA_bind
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
Evalue1.6e-52
EggNOG OGsCOG0143@1|root,KOG2241@2759|Eukaryota
EC6.1.1.10
DescriptiontRNA binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3225Gchil3225Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1170924..1171763 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3225.t1.start1Gchil3225.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1170924..1170926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3225.t1.CDS1Gchil3225.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1170924..1171763 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3225.t1.exon1Gchil3225.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1170924..1171763 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3225.t1.stop1Gchil3225.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1171761..1171763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3225.t1Gchil3225.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1170924..1171763 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=280bp
MNNTGFIASTATALWRSSVAKISTEAVGERMVSLVWSGGPSSAFTVLYAP
VGASFRSRRVVAHPRVNLIGLRPGVPYEVQVTGNGFDASTTFTTNATAQS
PGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEE
EPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNED
HTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNE
KGVAMFEDVPFLTSAGACFSPEQLVGSIS*
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spliced messenger RNA

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00004382_pilon:1170924..1171763+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAACACGGGGTTCATCGCCTCCACGGCAACTGCTTTGTGGCGCTC
ATCGGTGGCCAAGATATCCACAGAAGCCGTTGGAGAGCGCATGGTTTCTC
TGGTGTGGTCAGGGGGGCCAAGCAGCGCCTTCACAGTTTTGTACGCACCA
GTTGGTGCCTCGTTTCGATCACGGAGAGTTGTTGCTCATCCTCGAGTAAA
TCTCATTGGCCTAAGACCAGGTGTACCGTACGAAGTTCAAGTGACAGGCA
ATGGATTCGACGCGTCAACCACTTTCACGACTAATGCCACAGCGCAATCT
CCCGGCCCCGTAGATACTGAGGGAGGCTCACCTGAGCTGCCCATGACGGA
AGTTTCCCGCCTTGAGATAAGAGTTGGTAAGATTGTGCAGTGTGAAAAAC
ATCCCGATGCGGATTCCCTGTACGTCGAGAAAATTGATGTTGGAGAGGAA
GAACCTCGCACTATTGTTTCGGGGCTTGTGAAGTACGTACCGCTGGAGAA
AATGGTTGGGCGTACTGTGATTGTGCTGTGCAACTTGAAACCAAGAGCTA
TGCGAGGCGTAACCAGTCACGGAATGCTTCTATGCGTTTCAAATGAGGAT
CACACTATCGTTGATCCTTTATCGGCGCCGACTGATGCTCAAATCGGGGA
GCTCATTACCTTCGAAGGGCATAGAGCGGCCCCTATTGATCCGGGCAACA
GGGCGACAAAGGCGTTCGACAGAATCGCCGATGGCCTGAAAACGAATGAA
AAAGGTGTAGCCATGTTTGAAGATGTTCCATTTCTGACTTCGGCCGGAGC
GTGCTTTTCCCCGGAACAGCTTGTTGGTTCTATATCCTAA
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protein sequence of Gchil3225.t1

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=280bp
MNNTGFIASTATALWRSSVAKISTEAVGERMVSLVWSGGPSSAFTVLYAP
VGASFRSRRVVAHPRVNLIGLRPGVPYEVQVTGNGFDASTTFTTNATAQS
PGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEE
EPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNED
HTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNE
KGVAMFEDVPFLTSAGACFSPEQLVGSIS*
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mRNA from alignment at tig00004382_pilon:1170924..1171763+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00004382_pilon:1170924..1171763+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAACACGGGGTTCATCGCCTCCACGGCAACTGCTTTGTGGCGCTC
ATCGGTGGCCAAGATATCCACAGAAGCCGTTGGAGAGCGCATGGTTTCTC
TGGTGTGGTCAGGGGGGCCAAGCAGCGCCTTCACAGTTTTGTACGCACCA
GTTGGTGCCTCGTTTCGATCACGGAGAGTTGTTGCTCATCCTCGAGTAAA
TCTCATTGGCCTAAGACCAGGTGTACCGTACGAAGTTCAAGTGACAGGCA
ATGGATTCGACGCGTCAACCACTTTCACGACTAATGCCACAGCGCAATCT
CCCGGCCCCGTAGATACTGAGGGAGGCTCACCTGAGCTGCCCATGACGGA
AGTTTCCCGCCTTGAGATAAGAGTTGGTAAGATTGTGCAGTGTGAAAAAC
ATCCCGATGCGGATTCCCTGTACGTCGAGAAAATTGATGTTGGAGAGGAA
GAACCTCGCACTATTGTTTCGGGGCTTGTGAAGTACGTACCGCTGGAGAA
AATGGTTGGGCGTACTGTGATTGTGCTGTGCAACTTGAAACCAAGAGCTA
TGCGAGGCGTAACCAGTCACGGAATGCTTCTATGCGTTTCAAATGAGGAT
CACACTATCGTTGATCCTTTATCGGCGCCGACTGATGCTCAAATCGGGGA
GCTCATTACCTTCGAAGGGCATAGAGCGGCCCCTATTGATCCGGGCAACA
GGGCGACAAAGGCGTTCGACAGAATCGCCGATGGCCTGAAAACGAATGAA
AAAGGTGTAGCCATGTTTGAAGATGTTCCATTTCTGACTTCGGCCGGAGC
GTGCTTTTCCCCGGAACAGCTTGTTGGTTCTATATCCTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1170924..1171763+

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00004382_pilon:1170924..1171763+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAACACGGGGTTCATCGCCTCCACGGCAACTGCTTTGTGGCGCTC
ATCGGTGGCCAAGATATCCACAGAAGCCGTTGGAGAGCGCATGGTTTCTC
TGGTGTGGTCAGGGGGGCCAAGCAGCGCCTTCACAGTTTTGTACGCACCA
GTTGGTGCCTCGTTTCGATCACGGAGAGTTGTTGCTCATCCTCGAGTAAA
TCTCATTGGCCTAAGACCAGGTGTACCGTACGAAGTTCAAGTGACAGGCA
ATGGATTCGACGCGTCAACCACTTTCACGACTAATGCCACAGCGCAATCT
CCCGGCCCCGTAGATACTGAGGGAGGCTCACCTGAGCTGCCCATGACGGA
AGTTTCCCGCCTTGAGATAAGAGTTGGTAAGATTGTGCAGTGTGAAAAAC
ATCCCGATGCGGATTCCCTGTACGTCGAGAAAATTGATGTTGGAGAGGAA
GAACCTCGCACTATTGTTTCGGGGCTTGTGAAGTACGTACCGCTGGAGAA
AATGGTTGGGCGTACTGTGATTGTGCTGTGCAACTTGAAACCAAGAGCTA
TGCGAGGCGTAACCAGTCACGGAATGCTTCTATGCGTTTCAAATGAGGAT
CACACTATCGTTGATCCTTTATCGGCGCCGACTGATGCTCAAATCGGGGA
GCTCATTACCTTCGAAGGGCATAGAGCGGCCCCTATTGATCCGGGCAACA
GGGCGACAAAGGCGTTCGACAGAATCGCCGATGGCCTGAAAACGAATGAA
AAAGGTGTAGCCATGTTTGAAGATGTTCCATTTCTGACTTCGGCCGGAGC
GTGCTTTTCCCCGGAACAGCTTGTTGGTTCTATATCCTAA
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