Gchil3197.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3197.t1
Unique NameGchil3197.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length270
Homology
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A2V3IVE3_9FLOR (50S ribosomal protein L25 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVE3_9FLOR)

HSP 1 Score: 366 bits (940), Expect = 2.450e-125
Identity = 176/265 (66.42%), Postives = 213/265 (80.38%), Query Frame = 0
Query:    5 GNIFRSVQCARWQNKLRFLANAVQTLPEVSSRRDIVIDDINLLDSSDPNLFHRTLTGRLREGNKRATGKIRKEGSWIVACVEGRNKFPDLILQVPKAPLLEDMLAGRFALQKRGKTRFVGPLYELAIEEHAVGEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFEKKGDGCRTVLGDDEPAVVISK 269
            GN+  S + +++ ++L  ++NA     +     DI I+D+N L+SSDPNLFHR + GRLRE NKRA   IRKEGSWI A VEGRN+ P+LI+QVP APLLED+++GRFA QKRGKTRFVGPLYEL IE+    EYG++L T+ LPFERIRVLAHN+RIHP+ + PLGVSFRYSPENEPVRVRVPM CINQEKSPG+R+GGWLNRL++YIDINVA FTPAP  VTMDVSGM MK+KR + DL+FE+K  GC+ VL +D  AVVISK
Sbjct:   12 GNVLESRRISKFDSRLMLISNAAHCHSDQIDTGDISIEDMNRLESSDPNLFHRRIIGRLREANKRARRAIRKEGSWIPAYVEGRNRIPNLIIQVPMAPLLEDLMSGRFAYQKRGKTRFVGPLYELVIEQSTTDEYGEVLRTSHLPFERIRVLAHNMRIHPLTDKPLGVSFRYSPENEPVRVRVPMHCINQEKSPGLREGGWLNRLERYIDINVAAFTPAPSLVTMDVSGMEMKQKRCIADLEFERKNQGCKLVLDEDVTAVVISK 276          
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A1X6NUQ4_PORUM (Ribosomal_TL5_C domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUQ4_PORUM)

HSP 1 Score: 120 bits (300), Expect = 5.080e-29
Identity = 76/219 (34.70%), Postives = 112/219 (51.14%), Query Frame = 0
Query:   54 LFHRTLTGRLREGNKRATGKIRKEGSWI--VACVEGRNKFPDLILQVPKAPLLEDMLAGRFALQKRGKTRFVGPLYELAIEEHAVGEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRD-GGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFEKKGDGCRTVLGDDEPAVVISK 269
            L HRTL  RLR G KR    +R +G+W+  V    G  +  D  + +P  P+LED  AG F L K G+ R  GPLY +A    A        D A+  +   R    N+ + P  + P G S   +P + P RVRVP+     ++  G+++ GGWLN L + +D++V     AP+++T DV G+G++ +  V +L     G G R V    +   VISK
Sbjct:   56 LSHRTLVVRLRTGAKRDKRAVRVDGNWLPGVFQTRGTGQRGDAQILIPFKPILEDYKAGLFPLSKNGRVRLDGPLYHVAFATDA--------DAAAAGWAHTRGALRNVTVLPTRDAPGGASLVAAPLDAPARVRVPVRVRGVDRCAGLQEEGGWLNHLTQGVDLDVGVGAVAPEWLTADVGGLGLRGRVCVGELD---GGPGVRVVGDPTKIVAVISK 263          
BLAST of Gchil3197.t1 vs. uniprot
Match: UPI001EFFE374 (50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Candidatus Bandiella numerosa TaxID=2570586 RepID=UPI001EFFE374)

HSP 1 Score: 75.1 bits (183), Expect = 1.250e-12
Identity = 43/143 (30.07%), Postives = 76/143 (53.15%), Query Frame = 0
Query:  113 ALQKRGK----------TRFVGPLYELAIEEHAVGEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDL 245
            AL+K GK             +  +Y+  ++E+  G     L    L  + ++V++  ++  PV + P+ + F+   EN PV+V V +  IN++KSPGI+ GG LN ++KYI +N  P    P+++ +D+SG  +     + DL
Sbjct:   21 ALRKEGKISAIIYGFDENHMISLIYKDFLKEYQKGNLSSRLLEVKLGKKILKVISREVQTDPVTDNPIHIDFQLIKENIPVKVAVRVKVINKDKSPGIKIGGILNIVRKYISLNCIPQN-IPEYLEIDISGFEIGRNVHISDL 162          
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A1M3DWJ0_9PROT (50S ribosomal protein L25 n=1 Tax=Alphaproteobacteria bacterium 43-37 TaxID=1895707 RepID=A0A1M3DWJ0_9PROT)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-10
Identity = 40/117 (34.19%), Postives = 70/117 (59.83%), Query Frame = 0
Query:  132 EEHAVGEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFE 248
            E H  G + K+  T +L  +  +V+A ++++ PV ++PL V F    +N  V V VP+  IN+EKSPG++ GG L  + + ++IN AP    P+ V +D+SG+ + +   +  ++FE
Sbjct:   53 ELHHQGFFTKVF-TMNLEGKPEQVMAKDVQLDPVTDFPLHVDFIRVNQNTKVTVAVPLQFINEEKSPGLKRGGVLTIVVRDLEIN-APVNAIPEAVIVDLSGLEIHDSVHIDSIKFE 167          
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A429XIK1_9RICK (50S ribosomal protein L25 n=2 Tax=Rickettsiales TaxID=766 RepID=A0A429XIK1_9RICK)

HSP 1 Score: 69.7 bits (169), Expect = 1.170e-10
Identity = 36/129 (27.91%), Postives = 72/129 (55.81%), Query Frame = 0
Query:  118 GKTRFVGPLYELAIEEHAVGEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQ 246
            G+   +  +Y+  ++E+  G     L +  L  + ++V+  +++I PV + P+ V F+   +N  ++V V +  INQ+KSPGI+ GG LN ++KYI +N  P      ++ +D+ G  + +   + D++
Sbjct:   36 GENHMINLVYKDFLKEYHKGNLLSKLVSIKLGKKSLKVIPRDVQIDPVSDNPIHVDFQLVKDNVSIKVDVRVKVINQDKSPGIKKGGILNVVKKYISLNCIPKNILG-YLEIDIEGFEIGKNIHINDIE 163          
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A7W5ZWZ5_9SPHN (50S ribosomal protein L25 n=1 Tax=Novosphingobium hassiacum TaxID=173676 RepID=A0A7W5ZWZ5_9SPHN)

HSP 1 Score: 65.5 bits (158), Expect = 3.490e-9
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 0
Query:  113 ALQKRGKTRFV---GPLYELAI--EEHAV------GEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSG 233
            AL++ G+T  V   G    +AI  EE A+      G +   +   ++  + +R L  ++  HPV + PL   F    + + V V VP+V IN+EKSPG++ GG LN ++  +++  AP    P+ VT+DVSG
Sbjct:   22 ALRREGRTPAVIYGGNEEPIAIHLEEKALAKVLGTGHFFNSIVELTVGGKTVRTLPKDVAFHPVSDRPLHADFLRVTKGDVVHVNVPVVFINEEKSPGLKKGGVLNVVRHELELICAP-DAIPEDVTVDVSG 152          
BLAST of Gchil3197.t1 vs. uniprot
Match: UPI0015699856 (50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Ensifer psoraleae TaxID=520838 RepID=UPI0015699856)

HSP 1 Score: 64.3 bits (155), Expect = 9.450e-9
Identity = 32/99 (32.32%), Postives = 61/99 (61.62%), Query Frame = 0
Query:  151 ERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFEK 249
            E+IRVL  + ++ PV ++ + V F    ++  V V +P+   N+EKSPG++ GG LN ++  +++NV P    P+F+T+D++G+   E   + +++  K
Sbjct:   72 EKIRVLPKDYQLDPVRDFTMHVDFLRVSKDSQVSVAIPVHFENEEKSPGLKQGGVLNIVRHDVELNV-PADDIPEFLTVDLTGLKAGETIHISNIKLPK 169          
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A1Q9AVC1_9HYPH (50S ribosomal protein L25 n=1 Tax=Rhizobium oryzae TaxID=464029 RepID=A0A1Q9AVC1_9HYPH)

HSP 1 Score: 63.2 bits (152), Expect = 2.330e-8
Identity = 35/125 (28.00%), Postives = 69/125 (55.20%), Query Frame = 0
Query:  125 PLYELAIEEHAVGEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFEK 249
            P  E+ ++ H  G +   + T  +  E+IRVL  + ++ PV ++ + V F    +   V V VP+  IN +K+PGI++GG LN ++  +++ V P    P+ +T+D+ G+ + +   +  ++  K
Sbjct:   47 PSKEITLKIHG-GGFMTTVATIDVDGEKIRVLPKDYQLDPVRDFTMHVDFLRVTKGSSVDVEVPVHFINDDKAPGIKNGGVLNIVRHTVELTV-PADDIPEALTVDLEGLSIGDSVHISQVKLPK 169          
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A0X8R2T8_9SPHN (50S ribosomal protein L25 n=9 Tax=Sphingopyxis TaxID=165697 RepID=A0A0X8R2T8_9SPHN)

HSP 1 Score: 62.8 bits (151), Expect = 3.440e-8
Identity = 50/187 (26.74%), Postives = 88/187 (47.06%), Query Frame = 0
Query:   58 TLTGRLRE-GNKRATGKIRKEGSWIVACVEGRNKFPDLILQVPKAPLLEDMLAGRFA-----LQKRGKTRFVGPLYELAIEEHAVGEYGKLLDTASLPFERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKE 238
            TLT   RE   K A+ ++R+ G  + A V G N+ P L++ V +  L++ ++ G F      ++  GKT                                IR L  ++  HPV + P+   F    ++  V+V VP++ +N+EKSPG++ GG LN ++  +++ +      P  +T+DV+G  + E
Sbjct:    6 TLTAETRERAGKGASRELRRNGR-VPAVVYGGNEDP-LMIHVEEKLLMKQLMTGVFLNSVVMIEVGGKT--------------------------------IRTLPKDVAFHPVKDRPIHADFLRVSKDTKVQVGVPVLFVNEEKSPGLKRGGVLNVVRHELEL-ICEADKIPDDITIDVTGFDVGE 157          
BLAST of Gchil3197.t1 vs. uniprot
Match: A0A519QXV0_9SPHN (50S ribosomal protein L25 n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=A0A519QXV0_9SPHN)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-8
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 0
Query:  151 ERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGIRDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGM 234
            +++R L  ++  HPV + PL   F    +N  V V VP+V IN+EKSPG++ GG LN +   +D+ V      P  + +DV+G+
Sbjct:   71 KKVRTLPKDVAFHPVSDRPLHADFLRVSKNAKVHVNVPVVFINEEKSPGLKKGGVLNIVHHSLDL-VVEADKIPDDIQVDVTGL 153          
The following BLAST results are available for this feature:
BLAST of Gchil3197.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVE3_9FLOR2.450e-12566.4250S ribosomal protein L25 n=1 Tax=Gracilariopsis c... [more]
A0A1X6NUQ4_PORUM5.080e-2934.70Ribosomal_TL5_C domain-containing protein n=1 Tax=... [more]
UPI001EFFE3741.250e-1230.0750S ribosomal protein L25/general stress protein C... [more]
A0A1M3DWJ0_9PROT1.010e-1034.1950S ribosomal protein L25 n=1 Tax=Alphaproteobacte... [more]
A0A429XIK1_9RICK1.170e-1027.9150S ribosomal protein L25 n=2 Tax=Rickettsiales Ta... [more]
A0A7W5ZWZ5_9SPHN3.490e-934.0950S ribosomal protein L25 n=1 Tax=Novosphingobium ... [more]
UPI00156998569.450e-932.3250S ribosomal protein L25/general stress protein C... [more]
A0A1Q9AVC1_9HYPH2.330e-828.0050S ribosomal protein L25 n=1 Tax=Rhizobium oryzae... [more]
A0A0X8R2T8_9SPHN3.440e-826.7450S ribosomal protein L25 n=9 Tax=Sphingopyxis Tax... [more]
A0A519QXV0_9SPHN4.310e-836.9050S ribosomal protein L25 n=1 Tax=Novosphingobium ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037121Ribosomal protein L25, C-terminalGENE3D2.170.120.20Ribosomal protein L25, beta domaincoord: 179..269
e-value: 9.0E-10
score: 40.7
IPR020057Ribosomal protein L25, beta domainPFAMPF14693Ribosomal_TL5_Ccoord: 183..266
e-value: 4.4E-10
score: 39.8
NoneNo IPR availablePANTHERPTHR33284RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEINcoord: 151..249
NoneNo IPR availablePANTHERPTHR33284:SF1RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEINcoord: 151..249
IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamilySUPERFAMILY50715Ribosomal protein L25-likecoord: 151..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:791139..792024 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3197.t1Gchil3197.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004382_pilon 791139..792024 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3197.t1 ID=Gchil3197.t1|Name=Gchil3197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=270bp
MQTAGNIFRSVQCARWQNKLRFLANAVQTLPEVSSRRDIVIDDINLLDSS
DPNLFHRTLTGRLREGNKRATGKIRKEGSWIVACVEGRNKFPDLILQVPK
APLLEDMLAGRFALQKRGKTRFVGPLYELAIEEHAVGEYGKLLDTASLPF
ERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGI
RDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFEKK
GDGCRTVLGDDEPAVVISK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037121Ribosomal_L25_C
IPR020057Ribosomal_L25_b-dom
IPR011035Ribosomal_L25/Gln-tRNA_synth