Gchil3197.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3197.t1
Unique NameGchil3197.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:791139..792024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog244582.JQAK01000004_gene237
Preferred namectc
PFAMsRibosomal_L25p,Ribosomal_TL5_C
Max annot lvl766|Rickettsiales
KEGG koko:K02897
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue2.13e-11
EggNOG OGsCOG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,2U5P0@28211|Alphaproteobacteria,47FJV@766|Rickettsiales
DescriptionThis is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3197Gchil3197Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 791139..792024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3197.t1Gchil3197.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 791139..792024 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3197.t1.start1Gchil3197.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 791139..791141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3197.t1.CDS1Gchil3197.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 791139..791377 +
Gchil3197.t1.CDS2Gchil3197.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 791454..792024 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3197.t1.exon1Gchil3197.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 791139..791377 +
Gchil3197.t1.exon2Gchil3197.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 791454..792024 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3197.t1.intron1Gchil3197.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 791378..791453 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3197.t1.stop1Gchil3197.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 792022..792024 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3197.t1 ID=Gchil3197.t1|Name=Gchil3197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp
MQTAGNIFRSVQCARWQNKLRFLANAVQTLPEVSSRRDIVIDDINLLDSS
DPNLFHRTLTGRLREGNKRATGKIRKEGSWIVACVEGRNKFPDLILQVPK
APLLEDMLAGRFALQKRGKTRFVGPLYELAIEEHAVGEYGKLLDTASLPF
ERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGI
RDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFEKK
GDGCRTVLGDDEPAVVISK*
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spliced messenger RNA

>Gchil3197.t1 ID=Gchil3197.t1|Name=Gchil3197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00004382_pilon:791139..792024+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACCGCTGGCAACATCTTCCGATCTGTACAATGCGCTCGCTGGCA
GAACAAACTTCGATTTCTCGCGAACGCTGTACAAACCTTACCAGAAGTCA
GCAGCAGACGAGATATTGTTATTGATGACATAAATTTGCTCGATTCGTCA
GATCCAAATCTTTTTCATAGAACTTTAACCGGAAGACTTAGAGAAGGAAA
TAAAAGAGCTACCGGAAAAATTCGCAAGGAAGGCTCCTGGATCGTGGCAT
GTGTCGAGGGTCGCAACAAGTTTCCTGACCTCATCTTACAAGTTCCAAAA
GCCCCTCTTCTTGAAGATATGCTTGCGGGTAGATTTGCTTTACAGAAGAG
AGGAAAGACTCGCTTTGTGGGACCATTGTATGAATTGGCGATTGAGGAAC
ATGCAGTGGGCGAATATGGCAAACTCCTTGACACTGCGAGTCTGCCCTTT
GAACGGATACGGGTTCTTGCCCATAATATTCGAATACACCCAGTCGGGGA
GTACCCATTAGGCGTCTCGTTTCGGTATTCTCCCGAGAACGAGCCTGTTA
GAGTCCGAGTACCCATGGTATGTATCAATCAGGAGAAAAGCCCCGGGATA
CGAGACGGAGGATGGCTCAATCGTCTCCAGAAGTATATCGATATTAACGT
TGCGCCGTTTACTCCAGCACCTCAGTTTGTGACAATGGATGTTTCGGGAA
TGGGAATGAAAGAGAAACGATTCGTTAGAGACTTGCAGTTTGAAAAAAAG
GGCGATGGATGCCGAACTGTCTTGGGAGATGATGAACCAGCCGTAGTCAT
TTCTAAGTAA
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protein sequence of Gchil3197.t1

>Gchil3197.t1 ID=Gchil3197.t1|Name=Gchil3197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=270bp
MQTAGNIFRSVQCARWQNKLRFLANAVQTLPEVSSRRDIVIDDINLLDSS
DPNLFHRTLTGRLREGNKRATGKIRKEGSWIVACVEGRNKFPDLILQVPK
APLLEDMLAGRFALQKRGKTRFVGPLYELAIEEHAVGEYGKLLDTASLPF
ERIRVLAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPMVCINQEKSPGI
RDGGWLNRLQKYIDINVAPFTPAPQFVTMDVSGMGMKEKRFVRDLQFEKK
GDGCRTVLGDDEPAVVISK*
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mRNA from alignment at tig00004382_pilon:791139..792024+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3197.t1 ID=Gchil3197.t1|Name=Gchil3197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=886bp|location=Sequence derived from alignment at tig00004382_pilon:791139..792024+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAACCGCTGGCAACATCTTCCGATCTGTACAATGCGCTCGCTGGCA
GAACAAACTTCGATTTCTCGCGAACGCTGTACAAACCTTACCAGAAGTCA
GCAGCAGACGAGATATTGTTATTGATGACATAAATTTGCTCGATTCGTCA
GATCCAAATCTTTTTCATAGAACTTTAACCGGAAGACTTAGAGAAGGAAA
TAAAAGAGCTACCGGAAAAATTCGCAAGGAAGGCTCCTGGTAAGTTACTG
GGTTTATTTGTGTTTGTTTCACTACTTGAGCTGAAGAACTAACAAAAGAA
TTCACATTGATGAAGGATCGTGGCATGTGTCGAGGGTCGCAACAAGTTTC
CTGACCTCATCTTACAAGTTCCAAAAGCCCCTCTTCTTGAAGATATGCTT
GCGGGTAGATTTGCTTTACAGAAGAGAGGAAAGACTCGCTTTGTGGGACC
ATTGTATGAATTGGCGATTGAGGAACATGCAGTGGGCGAATATGGCAAAC
TCCTTGACACTGCGAGTCTGCCCTTTGAACGGATACGGGTTCTTGCCCAT
AATATTCGAATACACCCAGTCGGGGAGTACCCATTAGGCGTCTCGTTTCG
GTATTCTCCCGAGAACGAGCCTGTTAGAGTCCGAGTACCCATGGTATGTA
TCAATCAGGAGAAAAGCCCCGGGATACGAGACGGAGGATGGCTCAATCGT
CTCCAGAAGTATATCGATATTAACGTTGCGCCGTTTACTCCAGCACCTCA
GTTTGTGACAATGGATGTTTCGGGAATGGGAATGAAAGAGAAACGATTCG
TTAGAGACTTGCAGTTTGAAAAAAAGGGCGATGGATGCCGAACTGTCTTG
GGAGATGATGAACCAGCCGTAGTCATTTCTAAGTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:791139..792024+

>Gchil3197.t1 ID=Gchil3197.t1|Name=Gchil3197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00004382_pilon:791139..792024+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAACCGCTGGCAACATCTTCCGATCTGTACAATGCGCTCGCTGGCA
GAACAAACTTCGATTTCTCGCGAACGCTGTACAAACCTTACCAGAAGTCA
GCAGCAGACGAGATATTGTTATTGATGACATAAATTTGCTCGATTCGTCA
GATCCAAATCTTTTTCATAGAACTTTAACCGGAAGACTTAGAGAAGGAAA
TAAAAGAGCTACCGGAAAAATTCGCAAGGAAGGCTCCTGGATCGTGGCAT
GTGTCGAGGGTCGCAACAAGTTTCCTGACCTCATCTTACAAGTTCCAAAA
GCCCCTCTTCTTGAAGATATGCTTGCGGGTAGATTTGCTTTACAGAAGAG
AGGAAAGACTCGCTTTGTGGGACCATTGTATGAATTGGCGATTGAGGAAC
ATGCAGTGGGCGAATATGGCAAACTCCTTGACACTGCGAGTCTGCCCTTT
GAACGGATACGGGTTCTTGCCCATAATATTCGAATACACCCAGTCGGGGA
GTACCCATTAGGCGTCTCGTTTCGGTATTCTCCCGAGAACGAGCCTGTTA
GAGTCCGAGTACCCATGGTATGTATCAATCAGGAGAAAAGCCCCGGGATA
CGAGACGGAGGATGGCTCAATCGTCTCCAGAAGTATATCGATATTAACGT
TGCGCCGTTTACTCCAGCACCTCAGTTTGTGACAATGGATGTTTCGGGAA
TGGGAATGAAAGAGAAACGATTCGTTAGAGACTTGCAGTTTGAAAAAAAG
GGCGATGGATGCCGAACTGTCTTGGGAGATGATGAACCAGCCGTAGTCAT
TTCTAAGTAA
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