Gchil3189.t2 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3189.t2
Unique NameGchil3189.t2
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length583
Homology
BLAST of Gchil3189.t2 vs. uniprot
Match: A0A2V3IXH5_9FLOR (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXH5_9FLOR)

HSP 1 Score: 214 bits (545), Expect = 6.190e-58
Identity = 113/215 (52.56%), Postives = 151/215 (70.23%), Query Frame = 0
Query:  102 IVQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSA-DWRPNDGSNPDGRTRPKIS-PFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDVITKGYDTSNWDDEECNVPNDYSDDEEERAAKQAEKRARAKKRECDINSANVLKRRRIG 314
            +++E K D + KHLRS++E+DP    +P PN+I++ DDEI PVGKI+S ++SV++VS+  D   +  S        +IS     +L  V ALDH S LCFE+R+L GL+DETFGPV+ PFY++RFN+ EER+S GAA GRTV+ VK KS WV+GS++ TKGYDTSNW+DEE    +D+SDDE+ERAAKQA       KRE +  +A   KRRR G
Sbjct:  119 LIEEDKTDSDQKHLRSRNEVDPGTIKLPRPNIIVSADDEIYPVGKIMSVLESVVIVSTGKDCLLDQNSEAPQAPANRISFSQATNLNLVSALDHDSVLCFENRQLFGLIDETFGPVDNPFYVVRFNNEEERDSAGAAKGRTVFAVKHKSKWVKGSELQTKGYDTSNWNDEEVTATDDFSDDEDERAAKQAX--XXXXKREAEPAAAGFTKRRRFG 331          
BLAST of Gchil3189.t2 vs. uniprot
Match: R7QEQ3_CHOCR (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEQ3_CHOCR)

HSP 1 Score: 109 bits (273), Expect = 2.170e-21
Identity = 70/198 (35.35%), Postives = 107/198 (54.04%), Query Frame = 0
Query:   97 AELALIVQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDVITKGYDTSNWDDEECNVPNDYSDDEEERAAKQAEKRAR 294
            A  AL++++ +   +   LR+K+E +     I  P + +    ++  +GK+   MD  +++ S +      S       P +     D+    ALD GS +CF DR +LG + ETFG V  P+Y+IRFN+ EE     A +GR V+ V + S  VR  DV  KGYD+SN+ DEE     ++SDDE E  A+++ KRAR
Sbjct:  309 ATTALMMKDDEGPMDKAALRTKNEQNVNDIEIKKPTIQVTAAHKLLALGKVSGVMDKTVIIMSTEAEKAKSSG-----MPCVESER-DIAEASALDSGSIVCFGDRTVLGEIFETFGQVRSPYYIIRFNNEEEISEVNAKVGRDVFYVPELSKTVRAKDVHIKGYDSSNFFDEEVGNK-EFSDDEAEAEARRSRKRAR 499          
BLAST of Gchil3189.t2 vs. uniprot
Match: A0A0S6X962_BLOB1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6X962_BLOB1)

HSP 1 Score: 85.9 bits (211), Expect = 7.240e-14
Identity = 59/187 (31.55%), Postives = 94/187 (50.27%), Query Frame = 0
Query:  110 GEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDVIT-KGYDTSNWDDEECNVPN-DYSDDEEERAAKQAEKRAR 294
            G    LR+K+E+  E + +P P+V I    ++ P+G + S ++++I++                        G      + L+ GS LC EDR ++G V +T GPV+ P Y + F + E  +      G T++ V++ ST+V    +   KG D SN  DEE      ++SDDE ERA KQA K+A+
Sbjct:  247 GNKSSLRTKNEV--EAQVVPKPDVTITDTMKVVPLGNVESIVENLILIK-----------------------GYTTGEYQVLEQGSVLCLEDRTVIGAVSDTLGPVQAPLYCVAFTNREAIDELSLQYGVTIFYVEEHSTFVFTKPLQELKGTDASNIHDEEIGDDEVEFSDDEAERAHKQAIKQAK 408          
BLAST of Gchil3189.t2 vs. uniprot
Match: A0A7C8UJ69_ORBOL (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Orbilia oligospora TaxID=2813651 RepID=A0A7C8UJ69_ORBOL)

HSP 1 Score: 84.0 bits (206), Expect = 1.630e-13
Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 0
Query:  115 LRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDV-ITKGYDTSNWDDEEC-NVPNDYSDDEEERAAKQAEK 291
            L++K+E+   + A   P + I     I P+G I S +D +I+V                   K S  G      + L+  S LCFEDR LLG V ETFG VE+PFY +R   SEE +   A +GR V  +   ST++    +   KG D SN+ DEE  +   ++SDDE E   K+ +K
Sbjct:  224 LKTKNELPEAKLASTRPEIDITASTPIIPLGIIDSVVDDLILV-------------------KASVSG----EYQVLNERSVLCFEDRSLLGWVQETFGRVEQPFYTVRLRDSEEVKQLKATVGRKVSYIPSHSTFLFTKTIRAVKGSDASNFFDEEVGDDEREFSDDEAEAEFKKRQK 379          
BLAST of Gchil3189.t2 vs. uniprot
Match: N1J514_BLUG1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=2 Tax=Blumeria TaxID=34372 RepID=N1J514_BLUG1)

HSP 1 Score: 83.6 bits (205), Expect = 2.100e-13
Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 0
Query:  115 LRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDV-ITKGYDTSNWDDEECNVPN-DYSDDEEERAAKQAEKRARAKKRE 299
            LR+K+EI PE   IP P+++I  D  I  +G +   +D+V+++ +         N  G                R L+ GS LC  DR+++G+V ET G VE+PFY + F +S E  + G +MG  V+  +  ST+V    + + KG D SN +DEE      ++SDDE E   K+  K+ R  KRE
Sbjct:   22 LRTKNEI-PE-VVIPRPDIVITQDMPIIELGVVEQIVDNVLLIKA---------NTSGE--------------YRVLESGSILCLPDRRVIGVVAETIGRVEQPFYSVLFTNSAEILALGISMGIKVFYSESHSTYVFTKSLKVFKGSDASNMNDEEVGEDEVEFSDDEMEAEHKRRVKQKRMGKRE 183          
BLAST of Gchil3189.t2 vs. uniprot
Match: A0A7C8KJR5_ORBOL (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=4 Tax=Orbilia oligospora TaxID=2813651 RepID=A0A7C8KJR5_ORBOL)

HSP 1 Score: 84.0 bits (206), Expect = 2.130e-13
Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 0
Query:  115 LRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDV-ITKGYDTSNWDDEEC-NVPNDYSDDEEERAAKQAEK 291
            L++K+E+   + A   P + I     I P+G I S +D +I+V                   K S  G      + L+  S LCFEDR LLG V ETFG VE+PFY +R   SEE +   A +GR V  +   ST++    +   KG D SN+ DEE  +   ++SDDE E   K+ +K
Sbjct:  261 LKTKNELPEAKLASTRPEIDITASTPIIPLGIIDSVVDDLILV-------------------KASVSG----EYQVLNERSVLCFEDRSLLGWVQETFGRVEQPFYTVRLRDSEEVKQLKATVGRKVSYIPSHSTFLFTKTIRAVKGSDASNFFDEEVGDDEREFSDDEAEAEFKKRQK 416          
BLAST of Gchil3189.t2 vs. uniprot
Match: H3GLC6_PHYRM (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLC6_PHYRM)

HSP 1 Score: 83.2 bits (204), Expect = 3.350e-13
Identity = 76/231 (32.90%), Postives = 108/231 (46.75%), Query Frame = 0
Query:   98 ELALIVQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDVITKGYDTSNWDDEECNVPNDYSDDEEERAAKQAEKRARAKKRECDINSANVLKRRRIGAQHRGSIHQGRSSS 328
            E A+  +E K DG    + + HE+      +  PNV +  D   CP+ +      S++ VS+        SNP+  T+P              LD GS LC EDR +LG VDE FGPV  P YL+RF S+ +     A +   VY   + +T++   ++  KG D SN  DEE +   ++SDDE E AAK+  +                 KR R GA   GS   GR+S+
Sbjct:   95 EAAMEKEENKVDGP---MTTAHEV--ATAPVRQPNVELTAD---CPIAQC----GSILNVSTPGLMMTIKSNPN--TKP--------------LDEGSVLCLEDRSVLGCVDEIFGPVLMPMYLLRFESAAKMPEQ-ATVNSDVYYATEHTTYIEPENIKDKGTDASNIFDEEADDA-EFSDDEAEAAAKRGNR-----------------KRNRGGAPAAGSEGSGRTST 278          
BLAST of Gchil3189.t2 vs. uniprot
Match: A0A2D4C1Q5_PYTIN (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1Q5_PYTIN)

HSP 1 Score: 80.5 bits (197), Expect = 3.950e-13
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 0
Query:   98 ELALIVQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDVITKGYDTSNWDDEECNVPNDYSDDEEERAAK 287
            E A+  +E KA G    L++ +E+  ER  +  P V +  D  I   G++++     ++V+            D  ++P              LD GS LCFEDR +LG VDE FGPV  P YL+RF+++++      A+ + V+   + +T++    +  KG D SN  DEE +    YSDDE E AAK
Sbjct:  102 EAAMAKEEAKASGP---LKTANEV--ERVPVREPEVELTADCPIARCGEVLNVSRPGLLVTVKS---------DANSKP--------------LDEGSVLCFEDRTVLGCVDEVFGPVLMPMYLVRFDNADKIPMQ-TALNKAVFYATEHTTYIVPEKIRDKGTDASNLFDEEADEAV-YSDDEAEAAAK 261          
BLAST of Gchil3189.t2 vs. uniprot
Match: A0A383USE5_BLUHO (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Blumeria hordei TaxID=2867405 RepID=A0A383USE5_BLUHO)

HSP 1 Score: 83.6 bits (205), Expect = 4.290e-13
Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 0
Query:  115 LRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDV-ITKGYDTSNWDDEECNVPN-DYSDDEEERAAKQAEKRARAKKRE 299
            LR+K+EI PE   IP P+++I  D  I  +G +   +D+V+++ +         N  G                R L+ GS LC  DR+++G+V ET G VE+PFY + F +S E  + G +MG  V+  +  ST+V    + + KG D SN +DEE      ++SDDE E   K+  K+ R  KRE
Sbjct:  319 LRTKNEI-PE-VVIPRPDIVITQDMPIIELGVVEQIVDNVLLIKA---------NTSGE--------------YRVLESGSILCLPDRRVIGVVAETIGRVEQPFYSVLFTNSAEILALGISMGIKVFYSESHSTYVFTKSLKVFKGSDASNMNDEEVGEDEVEFSDDEMEAEHKRRVKQKRMGKRE 480          
BLAST of Gchil3189.t2 vs. uniprot
Match: B6K3E1_SCHJY (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K3E1_SCHJY)

HSP 1 Score: 82.8 bits (203), Expect = 5.540e-13
Identity = 61/185 (32.97%), Postives = 92/185 (49.73%), Query Frame = 0
Query:  103 VQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSAMDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFEDRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTWVRGSDV-ITKGYDTSNWDDEECNVPN-DYSDDEEERA 285
            V++ + DG     R+ HE+ PE E I  P+  ++   EI P+G+I++  +  I++ S                           S+   D  + +C E++ ++G + ETFGPV  PFY++RFN+SEE  S GA  G+ VY V   +  V    +   KG D SN  DEE N    ++SDDE E A
Sbjct:  220 VKDEEEDGRMSPPRTAHEL-PE-EVIERPDFTLDATTEIRPLGRILNVFEKHILIQST----------------------MHTDSI-VFDEKTVVCLENKDIIGYIHETFGPVTDPFYVVRFNTSEECASVGACAGQAVYFVPSMANSVDTEPLKYLKGSDASNVFDEEVNPSEQEFSDDEAEAA 379          
The following BLAST results are available for this feature:
BLAST of Gchil3189.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXH5_9FLOR6.190e-5852.56H/ACA ribonucleoprotein complex non-core subunit N... [more]
R7QEQ3_CHOCR2.170e-2135.35H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A0S6X962_BLOB17.240e-1431.55H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A7C8UJ69_ORBOL1.630e-1335.20H/ACA ribonucleoprotein complex non-core subunit N... [more]
N1J514_BLUG12.100e-1334.76H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A7C8KJR5_ORBOL2.130e-1335.20H/ACA ribonucleoprotein complex non-core subunit N... [more]
H3GLC6_PHYRM3.350e-1332.90H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A2D4C1Q5_PYTIN3.950e-1332.63H/ACA ribonucleoprotein complex subunit n=1 Tax=Py... [more]
A0A383USE5_BLUHO4.290e-1334.76H/ACA ribonucleoprotein complex non-core subunit N... [more]
B6K3E1_SCHJY5.540e-1332.97H/ACA ribonucleoprotein complex non-core subunit N... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 278..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 543..574
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 543..582
NoneNo IPR availablePANTHERPTHR31633:SF1H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1coord: 51..552
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 189..251
e-value: 1.1E-15
score: 57.3
IPR038664H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainGENE3D2.40.10.230Probable tRNA pseudouridine synthase domaincoord: 113..245
e-value: 1.8E-24
score: 88.0
IPR040309H/ACA ribonucleoprotein complex non-core subunit Naf1PANTHERPTHR31633H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1coord: 51..552
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 191..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:739992..741740 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3189.t2Gchil3189.t2Gracilaria chilensis NLEC103_M9 malemRNAtig00004382_pilon 739992..741740 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3189.t2 ID=Gchil3189.t2|Name=Gchil3189.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=583bp
MAVTPETKSSPLNVDEYSPVFEIVNDIFSKATTTPITPLIEGLLDAVTAS
KTSNAPHTATESSDSKYESSSVSSSTTSSSSSTSSLKHRYSHHAKKAELA
LIVQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSA
MDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFE
DRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTW
VRGSDVITKGYDTSNWDDEECNVPNDYSDDEEERAAKQAEKRARAKKREC
DINSANVLKRRRIGAQHRGSIHQGRSSSRQGMDQSFRHRNSPSDSIRLST
GRAFAATKRDSHAENSWRSGSNGAPGIHSGNAVTYSQFFTQARQALPQTM
QTHGGRTGDTHAHIGAHLAPNAQAQQFYRHLGLSQSFPTVPNSYHTMASG
PPYTNARALNYDEIQRLHHSQKASSSQEHFDQVPNSYWQGRVQPHVYPQR
NSVEVNQGELLYGRSMGEQYGYERPSFQMGAYGVSQYRHTEFSNYPSGNI
RPTHPNPEQNLEPYQQQSSILPGAQNLHKPHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR038664Gar1/Naf1_Cbf5-bd_sf
IPR040309Naf1
IPR009000Transl_B-barrel_sf