Gchil3189.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3189.t2
Unique Name	Gchil3189.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:739992..741740 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72558.CBQ73675
PFAMs	Gar1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14763
GOs	GO:0000491,GO:0000493,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030515,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Evalue	1.22e-14
EggNOG OGs	KOG2236@1\|root,KOG2236@2759\|Eukaryota,38EWH@33154\|Opisthokonta,3NY8R@4751\|Fungi,3V1KU@5204\|Basidiomycota,3N0XH@452284\|Ustilaginomycotina
Description	Gar1/Naf1 RNA binding region
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3189	Gchil3189	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 739992..741740 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3189.t2.stop1	Gchil3189.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 739992..739994 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3189.t2.CDS1	Gchil3189.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 739992..741740 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3189.t2.exon1	Gchil3189.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 739992..741740 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3189.t2.start1	Gchil3189.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 741738..741740 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3189.t2	Gchil3189.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 739992..741740 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:739992..741740-
coding sequence from alignment at tig00004382_pilon:739992..741740-

mRNA sequence

>Gchil3189.t2 ID=Gchil3189.t2|Name=Gchil3189.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=583bp
MAVTPETKSSPLNVDEYSPVFEIVNDIFSKATTTPITPLIEGLLDAVTAS
KTSNAPHTATESSDSKYESSSVSSSTTSSSSSTSSLKHRYSHHAKKAELA
LIVQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSA
MDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFE
DRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTW
VRGSDVITKGYDTSNWDDEECNVPNDYSDDEEERAAKQAEKRARAKKREC
DINSANVLKRRRIGAQHRGSIHQGRSSSRQGMDQSFRHRNSPSDSIRLST
GRAFAATKRDSHAENSWRSGSNGAPGIHSGNAVTYSQFFTQARQALPQTM
QTHGGRTGDTHAHIGAHLAPNAQAQQFYRHLGLSQSFPTVPNSYHTMASG
PPYTNARALNYDEIQRLHHSQKASSSQEHFDQVPNSYWQGRVQPHVYPQR
NSVEVNQGELLYGRSMGEQYGYERPSFQMGAYGVSQYRHTEFSNYPSGNI
RPTHPNPEQNLEPYQQQSSILPGAQNLHKPHR*

spliced messenger RNA

>Gchil3189.t2 ID=Gchil3189.t2|Name=Gchil3189.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004382_pilon:739992..741740- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGACACCTGAAACCAAGTCAAGCCCTCTTAATGTCGACGAATA
TTCTCCAGTGTTTGAAATTGTTAACGACATATTTTCTAAGGCTACAACAA
CTCCCATAACTCCCTTGATTGAAGGATTGCTTGACGCAGTCACGGCTAGC
AAGACCTCAAATGCTCCACATACGGCCACGGAATCATCGGATTCCAAGTA
TGAATCTTCATCCGTCTCTTCTTCCACCACCTCTTCATCTTCCTCCACAT
CAAGTTTGAAACACAGATACAGTCACCATGCCAAAAAAGCCGAGCTGGCT
CTTATTGTTCAAGAAACTAAAGCAGATGGAGAAGCAAAGCACTTGCGATC
AAAGCATGAAATTGACCCTGAAAGAGAAGCGATCCCAACTCCTAATGTCA
TAATCAACGGAGATGATGAAATATGCCCTGTCGGTAAAATAGTTTCAGCT
ATGGATTCCGTAATTGTGGTTTCTTCGGCAGATTGGCGTCCCAATGACGG
AAGCAATCCGGATGGGCGAACGCGCCCGAAGATTTCTCCTTTCGGCCCTG
ATCTGAAGTCAGTCAGGGCACTGGATCACGGCTCCGCTCTCTGTTTTGAA
GATCGAAAGCTTTTGGGATTGGTCGATGAGACTTTCGGCCCCGTGGAACG
GCCTTTCTATCTTATTCGATTTAATTCAAGTGAGGAGCGTGAATCCACCG
GGGCTGCAATGGGCCGAACGGTTTATATAGTCAAGCAAAAGAGCACGTGG
GTCAGAGGGAGTGATGTGATCACTAAAGGCTACGATACTAGCAACTGGGA
TGATGAAGAGTGCAATGTTCCGAATGACTATTCAGATGATGAGGAAGAGC
GAGCTGCGAAGCAAGCGGAAAAGAGGGCGCGAGCCAAAAAAAGGGAATGT
GATATAAATAGTGCGAACGTCCTGAAACGCCGGAGAATAGGCGCTCAACA
TCGCGGCAGTATACATCAGGGGCGATCGAGCTCCAGGCAAGGAATGGACC
AGAGTTTCAGGCACAGGAATTCTCCTTCCGATTCGATCAGATTAAGCACT
GGTCGCGCTTTTGCTGCTACGAAACGTGATTCTCACGCTGAGAATTCGTG
GCGAAGTGGCTCAAATGGAGCACCGGGCATACACAGCGGGAATGCAGTCA
CATATTCCCAGTTCTTCACCCAAGCCAGACAAGCACTTCCGCAAACCATG
CAAACACATGGAGGACGCACCGGAGATACTCATGCACACATCGGAGCTCA
TCTTGCTCCCAATGCTCAAGCGCAACAGTTTTATCGTCATCTAGGTCTTT
CGCAATCATTTCCGACTGTTCCCAATTCTTATCATACCATGGCTAGTGGA
CCACCTTACACGAATGCAAGGGCACTCAACTATGATGAGATACAACGACT
TCATCACAGCCAGAAAGCAAGCAGTTCTCAGGAACATTTCGACCAGGTTC
CAAATTCATATTGGCAAGGACGTGTTCAGCCTCATGTTTACCCTCAAAGG
AATAGTGTAGAAGTCAATCAGGGCGAATTATTGTACGGGAGATCGATGGG
TGAACAGTATGGGTATGAGAGACCAAGCTTTCAAATGGGAGCATATGGAG
TGAGCCAATACCGTCATACGGAGTTTTCGAACTATCCATCAGGAAATATT
AGACCAACGCACCCTAATCCTGAACAAAACTTGGAGCCATATCAGCAACA
ATCATCAATTCTACCTGGAGCACAAAATTTACACAAACCGCACAGATGA

protein sequence of Gchil3189.t2

>Gchil3189.t2 ID=Gchil3189.t2|Name=Gchil3189.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=583bp
MAVTPETKSSPLNVDEYSPVFEIVNDIFSKATTTPITPLIEGLLDAVTAS
KTSNAPHTATESSDSKYESSSVSSSTTSSSSSTSSLKHRYSHHAKKAELA
LIVQETKADGEAKHLRSKHEIDPEREAIPTPNVIINGDDEICPVGKIVSA
MDSVIVVSSADWRPNDGSNPDGRTRPKISPFGPDLKSVRALDHGSALCFE
DRKLLGLVDETFGPVERPFYLIRFNSSEERESTGAAMGRTVYIVKQKSTW
VRGSDVITKGYDTSNWDDEECNVPNDYSDDEEERAAKQAEKRARAKKREC
DINSANVLKRRRIGAQHRGSIHQGRSSSRQGMDQSFRHRNSPSDSIRLST
GRAFAATKRDSHAENSWRSGSNGAPGIHSGNAVTYSQFFTQARQALPQTM
QTHGGRTGDTHAHIGAHLAPNAQAQQFYRHLGLSQSFPTVPNSYHTMASG
PPYTNARALNYDEIQRLHHSQKASSSQEHFDQVPNSYWQGRVQPHVYPQR
NSVEVNQGELLYGRSMGEQYGYERPSFQMGAYGVSQYRHTEFSNYPSGNI
RPTHPNPEQNLEPYQQQSSILPGAQNLHKPHR*

mRNA from alignment at tig00004382_pilon:739992..741740-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3189.t2 ID=Gchil3189.t2|Name=Gchil3189.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004382_pilon:739992..741740- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTGACACCTGAAACCAAGTCAAGCCCTCTTAATGTCGACGAATA
TTCTCCAGTGTTTGAAATTGTTAACGACATATTTTCTAAGGCTACAACAA
CTCCCATAACTCCCTTGATTGAAGGATTGCTTGACGCAGTCACGGCTAGC
AAGACCTCAAATGCTCCACATACGGCCACGGAATCATCGGATTCCAAGTA
TGAATCTTCATCCGTCTCTTCTTCCACCACCTCTTCATCTTCCTCCACAT
CAAGTTTGAAACACAGATACAGTCACCATGCCAAAAAAGCCGAGCTGGCT
CTTATTGTTCAAGAAACTAAAGCAGATGGAGAAGCAAAGCACTTGCGATC
AAAGCATGAAATTGACCCTGAAAGAGAAGCGATCCCAACTCCTAATGTCA
TAATCAACGGAGATGATGAAATATGCCCTGTCGGTAAAATAGTTTCAGCT
ATGGATTCCGTAATTGTGGTTTCTTCGGCAGATTGGCGTCCCAATGACGG
AAGCAATCCGGATGGGCGAACGCGCCCGAAGATTTCTCCTTTCGGCCCTG
ATCTGAAGTCAGTCAGGGCACTGGATCACGGCTCCGCTCTCTGTTTTGAA
GATCGAAAGCTTTTGGGATTGGTCGATGAGACTTTCGGCCCCGTGGAACG
GCCTTTCTATCTTATTCGATTTAATTCAAGTGAGGAGCGTGAATCCACCG
GGGCTGCAATGGGCCGAACGGTTTATATAGTCAAGCAAAAGAGCACGTGG
GTCAGAGGGAGTGATGTGATCACTAAAGGCTACGATACTAGCAACTGGGA
TGATGAAGAGTGCAATGTTCCGAATGACTATTCAGATGATGAGGAAGAGC
GAGCTGCGAAGCAAGCGGAAAAGAGGGCGCGAGCCAAAAAAAGGGAATGT
GATATAAATAGTGCGAACGTCCTGAAACGCCGGAGAATAGGCGCTCAACA
TCGCGGCAGTATACATCAGGGGCGATCGAGCTCCAGGCAAGGAATGGACC
AGAGTTTCAGGCACAGGAATTCTCCTTCCGATTCGATCAGATTAAGCACT
GGTCGCGCTTTTGCTGCTACGAAACGTGATTCTCACGCTGAGAATTCGTG
GCGAAGTGGCTCAAATGGAGCACCGGGCATACACAGCGGGAATGCAGTCA
CATATTCCCAGTTCTTCACCCAAGCCAGACAAGCACTTCCGCAAACCATG
CAAACACATGGAGGACGCACCGGAGATACTCATGCACACATCGGAGCTCA
TCTTGCTCCCAATGCTCAAGCGCAACAGTTTTATCGTCATCTAGGTCTTT
CGCAATCATTTCCGACTGTTCCCAATTCTTATCATACCATGGCTAGTGGA
CCACCTTACACGAATGCAAGGGCACTCAACTATGATGAGATACAACGACT
TCATCACAGCCAGAAAGCAAGCAGTTCTCAGGAACATTTCGACCAGGTTC
CAAATTCATATTGGCAAGGACGTGTTCAGCCTCATGTTTACCCTCAAAGG
AATAGTGTAGAAGTCAATCAGGGCGAATTATTGTACGGGAGATCGATGGG
TGAACAGTATGGGTATGAGAGACCAAGCTTTCAAATGGGAGCATATGGAG
TGAGCCAATACCGTCATACGGAGTTTTCGAACTATCCATCAGGAAATATT
AGACCAACGCACCCTAATCCTGAACAAAACTTGGAGCCATATCAGCAACA
ATCATCAATTCTACCTGGAGCACAAAATTTACACAAACCGCACAGATGA

Coding sequence (CDS) from alignment at tig00004382_pilon:739992..741740-

>Gchil3189.t2 ID=Gchil3189.t2|Name=Gchil3189.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00004382_pilon:739992..741740- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTGACACCTGAAACCAAGTCAAGCCCTCTTAATGTCGACGAATA
TTCTCCAGTGTTTGAAATTGTTAACGACATATTTTCTAAGGCTACAACAA
CTCCCATAACTCCCTTGATTGAAGGATTGCTTGACGCAGTCACGGCTAGC
AAGACCTCAAATGCTCCACATACGGCCACGGAATCATCGGATTCCAAGTA
TGAATCTTCATCCGTCTCTTCTTCCACCACCTCTTCATCTTCCTCCACAT
CAAGTTTGAAACACAGATACAGTCACCATGCCAAAAAAGCCGAGCTGGCT
CTTATTGTTCAAGAAACTAAAGCAGATGGAGAAGCAAAGCACTTGCGATC
AAAGCATGAAATTGACCCTGAAAGAGAAGCGATCCCAACTCCTAATGTCA
TAATCAACGGAGATGATGAAATATGCCCTGTCGGTAAAATAGTTTCAGCT
ATGGATTCCGTAATTGTGGTTTCTTCGGCAGATTGGCGTCCCAATGACGG
AAGCAATCCGGATGGGCGAACGCGCCCGAAGATTTCTCCTTTCGGCCCTG
ATCTGAAGTCAGTCAGGGCACTGGATCACGGCTCCGCTCTCTGTTTTGAA
GATCGAAAGCTTTTGGGATTGGTCGATGAGACTTTCGGCCCCGTGGAACG
GCCTTTCTATCTTATTCGATTTAATTCAAGTGAGGAGCGTGAATCCACCG
GGGCTGCAATGGGCCGAACGGTTTATATAGTCAAGCAAAAGAGCACGTGG
GTCAGAGGGAGTGATGTGATCACTAAAGGCTACGATACTAGCAACTGGGA
TGATGAAGAGTGCAATGTTCCGAATGACTATTCAGATGATGAGGAAGAGC
GAGCTGCGAAGCAAGCGGAAAAGAGGGCGCGAGCCAAAAAAAGGGAATGT
GATATAAATAGTGCGAACGTCCTGAAACGCCGGAGAATAGGCGCTCAACA
TCGCGGCAGTATACATCAGGGGCGATCGAGCTCCAGGCAAGGAATGGACC
AGAGTTTCAGGCACAGGAATTCTCCTTCCGATTCGATCAGATTAAGCACT
GGTCGCGCTTTTGCTGCTACGAAACGTGATTCTCACGCTGAGAATTCGTG
GCGAAGTGGCTCAAATGGAGCACCGGGCATACACAGCGGGAATGCAGTCA
CATATTCCCAGTTCTTCACCCAAGCCAGACAAGCACTTCCGCAAACCATG
CAAACACATGGAGGACGCACCGGAGATACTCATGCACACATCGGAGCTCA
TCTTGCTCCCAATGCTCAAGCGCAACAGTTTTATCGTCATCTAGGTCTTT
CGCAATCATTTCCGACTGTTCCCAATTCTTATCATACCATGGCTAGTGGA
CCACCTTACACGAATGCAAGGGCACTCAACTATGATGAGATACAACGACT
TCATCACAGCCAGAAAGCAAGCAGTTCTCAGGAACATTTCGACCAGGTTC
CAAATTCATATTGGCAAGGACGTGTTCAGCCTCATGTTTACCCTCAAAGG
AATAGTGTAGAAGTCAATCAGGGCGAATTATTGTACGGGAGATCGATGGG
TGAACAGTATGGGTATGAGAGACCAAGCTTTCAAATGGGAGCATATGGAG
TGAGCCAATACCGTCATACGGAGTTTTCGAACTATCCATCAGGAAATATT
AGACCAACGCACCCTAATCCTGAACAAAACTTGGAGCCATATCAGCAACA
ATCATCAATTCTACCTGGAGCACAAAATTTACACAAACCGCACAGATGA