Gchil3059.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil3059.t1
Unique Name	Gchil3059.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	215

Homology

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BLAST of Gchil3059.t1 vs. uniprot
Match: A0A2V3J7G9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7G9_9FLOR)

HSP 1 Score: 211 bits (536), Expect = 8.580e-66
Identity = 112/203 (55.17%), Postives = 148/203 (72.91%), Query Frame = 0

Query:    8 PTPYSARTLTSSQKQQVTNRIQLRLAFGHASAILAVGVLIHGALIDYSNLAPNAVVLLMCAIPLRTILSLTDHSIRQPTKQSGLNLALKAAVLFSSNALHILATRVSPLRFTRLIGCSAMDVSATWLEMTVNAKMPSIHPFAIPFSFVYSAADIYLAAIVAGTQPIVDIFYPFLTLRFVINLRLLLVCSYKIVRNEEMKRGTS 210
            P+  S R ++  Q+  +   IQ RLA GH  AI+AV  L++ +    S LAPNAVVLL+C IPLRT+LSL+++ I QP  QSG+ LAL+A+VLFSSNA+H+LAT+ SP R   LI CSA+DVSA+WL+M  NAK PS+ P A+ FS +YS AD+YLAAI AG QPI++  YPFLT+RFV+N+R L++ S  IV  E+ KR T+
Sbjct:    7 PSSPSHRPVSDEQRALIKRSIQTRLAIGHLCAIIAVSTLVNASFRPASALAPNAVVLLLCCIPLRTVLSLSEY-ITQPATQSGIQLALRASVLFSSNAIHVLATKASPPRLLSLIACSAIDVSASWLQMADNAKTPSLRPSALLFSLIYSVADVYLAAISAGVQPIINTLYPFLTIRFVLNVRALVISSRNIVWTEQWKRKTT 208

The following BLAST results are available for this feature:

BLAST of Gchil3059.t1 vs. uniprot

BLAST of Gchil3059.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J7G9_9FLOR	8.580e-66	55.17	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 57..78
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 198..214
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 116..136
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 30..51
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 137..147
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 148..170
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 171..175
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 176..197
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 52..56
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..29
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 90..110
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 111..115
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 79..89
None	No IPR available	TMHMM	TMhelix		coord: 161..183
None	No IPR available	TMHMM	TMhelix		coord: 57..76
None	No IPR available	TMHMM	TMhelix		coord: 30..52
None	No IPR available	TMHMM	TMhelix		coord: 89..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1565841..1566673 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3059.t1	Gchil3059.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000106_pilon 1565841..1566673 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil3059.t1 ID=Gchil3059.t1|Name=Gchil3059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=215bp
MRPQSVQPTPYSARTLTSSQKQQVTNRIQLRLAFGHASAILAVGVLIHGA
LIDYSNLAPNAVVLLMCAIPLRTILSLTDHSIRQPTKQSGLNLALKAAVL
FSSNALHILATRVSPLRFTRLIGCSAMDVSATWLEMTVNAKMPSIHPFAI
PFSFVYSAADIYLAAIVAGTQPIVDIFYPFLTLRFVINLRLLLVCSYKIV
RNEEMKRGTSQTKL*