Gchil3059.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3059.t1
Unique NameGchil3059.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1565841..1566673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3059Gchil3059Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1565841..1566673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3059.t1Gchil3059.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1565841..1566673 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3059.t1.start1Gchil3059.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1565841..1565843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3059.t1.CDS1Gchil3059.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1565841..1565943 +
Gchil3059.t1.CDS2Gchil3059.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1566056..1566220 +
Gchil3059.t1.CDS3Gchil3059.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1566297..1566673 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3059.t1.exon1Gchil3059.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1565841..1565943 +
Gchil3059.t1.exon2Gchil3059.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1566056..1566220 +
Gchil3059.t1.exon3Gchil3059.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1566297..1566673 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3059.t1.intron1Gchil3059.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1565944..1566055 +
Gchil3059.t1.intron2Gchil3059.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1566221..1566296 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3059.t1.stop1Gchil3059.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1566671..1566673 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3059.t1 ID=Gchil3059.t1|Name=Gchil3059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=215bp
MRPQSVQPTPYSARTLTSSQKQQVTNRIQLRLAFGHASAILAVGVLIHGA
LIDYSNLAPNAVVLLMCAIPLRTILSLTDHSIRQPTKQSGLNLALKAAVL
FSSNALHILATRVSPLRFTRLIGCSAMDVSATWLEMTVNAKMPSIHPFAI
PFSFVYSAADIYLAAIVAGTQPIVDIFYPFLTLRFVINLRLLLVCSYKIV
RNEEMKRGTSQTKL*
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spliced messenger RNA

>Gchil3059.t1 ID=Gchil3059.t1|Name=Gchil3059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000106_pilon:1565841..1566673+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCTCAATCCGTTCAGCCAACCCCATATTCAGCACGCACCCTAAC
TTCATCACAGAAACAACAAGTCACCAACAGAATCCAACTTCGTTTAGCTT
TTGGTCATGCTTCTGCTATTCTCGCTGTTGGCGTACTGATTCATGGTGCG
CTCATCGATTACTCCAATCTCGCTCCAAATGCTGTAGTCTTGCTCATGTG
TGCTATTCCGTTGCGAACTATTTTATCGCTCACAGACCACAGCATCCGCC
AACCCACCAAGCAATCAGGATTGAACCTCGCTCTCAAGGCCGCCGTACTA
TTTTCCTCTAATGCACTTCATATACTCGCCACCCGAGTATCTCCACTTCG
TTTCACACGACTAATCGGCTGCTCTGCCATGGACGTGAGCGCCACATGGT
TAGAGATGACAGTCAATGCCAAGATGCCCTCAATTCACCCATTTGCCATT
CCATTCTCATTTGTGTACAGCGCTGCAGATATATATTTGGCAGCCATCGT
TGCAGGGACACAGCCGATAGTGGATATCTTCTACCCCTTTTTGACTTTGA
GGTTTGTAATCAACCTCAGACTTTTGCTCGTGTGCTCCTATAAGATCGTA
CGAAATGAGGAGATGAAGCGAGGCACGTCCCAAACAAAGCTATGA
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protein sequence of Gchil3059.t1

>Gchil3059.t1 ID=Gchil3059.t1|Name=Gchil3059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=215bp
MRPQSVQPTPYSARTLTSSQKQQVTNRIQLRLAFGHASAILAVGVLIHGA
LIDYSNLAPNAVVLLMCAIPLRTILSLTDHSIRQPTKQSGLNLALKAAVL
FSSNALHILATRVSPLRFTRLIGCSAMDVSATWLEMTVNAKMPSIHPFAI
PFSFVYSAADIYLAAIVAGTQPIVDIFYPFLTLRFVINLRLLLVCSYKIV
RNEEMKRGTSQTKL*
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mRNA from alignment at tig00000106_pilon:1565841..1566673+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3059.t1 ID=Gchil3059.t1|Name=Gchil3059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=833bp|location=Sequence derived from alignment at tig00000106_pilon:1565841..1566673+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCCTCAATCCGTTCAGCCAACCCCATATTCAGCACGCACCCTAAC
TTCATCACAGAAACAACAAGTCACCAACAGAATCCAACTTCGTTTAGCTT
TTGGTAAGCGCTTATGTCTTCTTGTTACGCCCGTTTTGGATGAACCTACC
CACACTTCTCGCCTCTAACGCTGCTGGCTTGTGCTAAACTAATCACGATT
TACGCTTGCGCCCAGGTCATGCTTCTGCTATTCTCGCTGTTGGCGTACTG
ATTCATGGTGCGCTCATCGATTACTCCAATCTCGCTCCAAATGCTGTAGT
CTTGCTCATGTGTGCTATTCCGTTGCGAACTATTTTATCGCTCACAGACC
ACAGCATCCGCCAACCCACCAAGCAATCAGGTATGTTCGTTTTGAGTCCT
TTGCCTTTTCTCCACAATCACCAACTCATCTCACTAACATACGACATCCA
ATGCAGGATTGAACCTCGCTCTCAAGGCCGCCGTACTATTTTCCTCTAAT
GCACTTCATATACTCGCCACCCGAGTATCTCCACTTCGTTTCACACGACT
AATCGGCTGCTCTGCCATGGACGTGAGCGCCACATGGTTAGAGATGACAG
TCAATGCCAAGATGCCCTCAATTCACCCATTTGCCATTCCATTCTCATTT
GTGTACAGCGCTGCAGATATATATTTGGCAGCCATCGTTGCAGGGACACA
GCCGATAGTGGATATCTTCTACCCCTTTTTGACTTTGAGGTTTGTAATCA
ACCTCAGACTTTTGCTCGTGTGCTCCTATAAGATCGTACGAAATGAGGAG
ATGAAGCGAGGCACGTCCCAAACAAAGCTATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1565841..1566673+

>Gchil3059.t1 ID=Gchil3059.t1|Name=Gchil3059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000106_pilon:1565841..1566673+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCCTCAATCCGTTCAGCCAACCCCATATTCAGCACGCACCCTAAC
TTCATCACAGAAACAACAAGTCACCAACAGAATCCAACTTCGTTTAGCTT
TTGGTCATGCTTCTGCTATTCTCGCTGTTGGCGTACTGATTCATGGTGCG
CTCATCGATTACTCCAATCTCGCTCCAAATGCTGTAGTCTTGCTCATGTG
TGCTATTCCGTTGCGAACTATTTTATCGCTCACAGACCACAGCATCCGCC
AACCCACCAAGCAATCAGGATTGAACCTCGCTCTCAAGGCCGCCGTACTA
TTTTCCTCTAATGCACTTCATATACTCGCCACCCGAGTATCTCCACTTCG
TTTCACACGACTAATCGGCTGCTCTGCCATGGACGTGAGCGCCACATGGT
TAGAGATGACAGTCAATGCCAAGATGCCCTCAATTCACCCATTTGCCATT
CCATTCTCATTTGTGTACAGCGCTGCAGATATATATTTGGCAGCCATCGT
TGCAGGGACACAGCCGATAGTGGATATCTTCTACCCCTTTTTGACTTTGA
GGTTTGTAATCAACCTCAGACTTTTGCTCGTGTGCTCCTATAAGATCGTA
CGAAATGAGGAGATGAAGCGAGGCACGTCCCAAACAAAGCTATGA
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