Gchil2941.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2941.t1
Unique NameGchil2941.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Homology
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A2V3J4A4_9FLOR (DNA polymerase III subunit epsilon n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4A4_9FLOR)

HSP 1 Score: 392 bits (1008), Expect = 2.450e-133
Identity = 202/343 (58.89%), Postives = 248/343 (72.30%), Query Frame = 0
Query:    3 RPIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKILAKADDHLRNLSVRMGNGEAAVGIQIRHMIENAAMNRRESMEPKRKNSAAVMTKGGAPTSISTN----GAMMTRSRARMQKVP---SSKEQADLKAQELSDHFLTA-VSIEDSKGDVEGEKT-QPKYVTRMGHLWHALRSCQCLEMAVSIRRVTSVPQGLQPCVWCVSSVQNRR 336
            RPI IWD+ETTGLSP+K+HIVEIA+MEL CTS   T  +FSSLVHPPG SAPRAASRVHGITN MMQDAPSF+KVW+GVLEY+ YV H+RG PI +AHNLSFDL FL+ EL RIGE LPDWDFACSLRD+A+I+WPGHSASLASL +LL + NEEAHRALSDVETTS+I+ KAD+HLR +++RMG  E AVG QIR+MIE AA  RRES+ PK +N  + +T+  AP     N    G++ TRS +R Q+     S  E  D+   +     LT    + +  G  EGE      Y+T MG LWH  R C CL++A++IR+V+SVP  L+ C+ C S    +R
Sbjct:   14 RPIIIWDTETTGLSPSKNHIVEIAMMELECTSPKSTPYTFSSLVHPPGESAPRAASRVHGITNDMMQDAPSFDKVWDGVLEYISYVSHQRGKPILVAHNLSFDLSFLKSELRRIGESLPDWDFACSLRDIAKIVWPGHSASLASLGQLLSIQNEEAHRALSDVETTSRIIGKADEHLRKVTMRMGAPEVAVGSQIRNMIEAAARRRRESILPKAENQRSTVTR--APMEAERNEPVDGSVTTRSMSRRQRESTRESRHEAGDIVQMQAPSALLTLNEGVSEGNGVREGEDVVHAIYITPMGQLWHTSRDCHCLDLALTIRKVSSVPPSLRRCMSCTSGPSGKR 354          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A1H9B3A1_9GAMM (DNA polymerase III subunit epsilon n=2 Tax=Ectothiorhodospira magna TaxID=867345 RepID=A0A1H9B3A1_9GAMM)

HSP 1 Score: 103 bits (256), Expect = 3.820e-22
Identity = 68/188 (36.17%), Postives = 99/188 (52.66%), Query Frame = 0
Query:    5 IFIWDSETTGLSPAK-HHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRD---VARIIWPGHSASLASLCKLLRVHNE--EAHRALSDVETTSKILAKADDHLRNLSVRM 186
            I I D+ETTGL PA+ H I+EI  +E+    +  T  SF   +HP        A  +HGITN+ + D P F +V E  +E+V      RG  + I HN  FD+GF+ HELAR+G      +  C++ D   +AR + PG   SL +LCK  ++ N   E H AL D    +++        ++LS+ M
Sbjct:   16 IVILDTETTGLDPAEGHRIIEIGCVEM--VRRRHTARSFHQYLHPD-REVDAGAVEIHGITNEFLADKPRFAEVAEAFIEFV------RGAELII-HNAPFDVGFINHELARLGGDWGQLEDHCTITDSLVLARKMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILAEVYLAMTGGQKSLSLGM 193          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A2S9D9A0_9MICC (DEAD/DEAH box helicase n=1 Tax=Arthrobacter sp. MYb23 TaxID=1848603 RepID=A0A2S9D9A0_9MICC)

HSP 1 Score: 106 bits (265), Expect = 1.170e-21
Identity = 61/170 (35.88%), Postives = 94/170 (55.29%), Query Frame = 0
Query:    4 PIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKILA 173
            P  + D ETTG SP +  IVEIAI+  H   Q   + ++S+LV P   + P   S VHGI++  +++AP F       ++ + ++  +      +AHN +FDLGFLR E  R G+ +P W   C+++ + +   PG SASLA  CK L V   +AH A +D    + +L+
Sbjct:  777 PYAVIDVETTGFSPQRDRIVEIAIV--HVNEQGTVQGTWSTLVDPEQATGP---SHVHGISDHDVRNAPRF-------IDVLPHIQQKLAGRTVVAHNAAFDLGFLRSEFQRAGKMIPHWPLVCTMQ-LTKSYHPGESASLADTCKRLNVETGKAHTAAADALAAAGVLS 933          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A2S5IUZ4_9MICC (DEAD/DEAH box helicase n=2 Tax=Arthrobacter pityocampae TaxID=547334 RepID=A0A2S5IUZ4_9MICC)

HSP 1 Score: 105 bits (262), Expect = 2.910e-21
Identity = 59/169 (34.91%), Postives = 95/169 (56.21%), Query Frame = 0
Query:    4 PIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKIL 172
            P  + D ETTG SP +H +VEIAI+ L+  +    + S+++L++   +  P   S +HGIT+  + DAP F +V   + E +          + +AHN++FDLGFL  E  R G   P W   C+++ ++R   PG  A+LA++C+ L +    AH AL+D    ++IL
Sbjct:  784 PFAVIDVETTGFSPQRHRVVEIAIIRLN--AHGVRERSWTTLIN---SHQPTGPSHIHGITSADIADAPGFAEVLNEIAEQL-------SGAVVVAHNVAFDLGFLTAEFERAGMSAPAWPVLCTMQ-LSRAFEPGSPATLAAVCQRLGIDTGTAHTALADAAAAAEIL 939          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A6I3D1F3_9ACTN (Exonuclease domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A6I3D1F3_9ACTN)

HSP 1 Score: 99.4 bits (246), Expect = 6.590e-21
Identity = 61/172 (35.47%), Postives = 86/172 (50.00%), Query Frame = 0
Query:    2 SRPIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKILA 173
            S P  + D ETTGLSPAK  I+EIA++   C         +S+LV P     P   + +HGIT   ++ AP+FE + E +   +          +  AHNLSFD GFL  E  R G   PD    C+L+    ++      SLA+    L + +  AHRAL+D   T+ +LA
Sbjct:   49 SLPFAVLDVETTGLSPAKDRIIEIAVVR--CAPDGSFLDEWSTLVDPGRDPGP---THIHGITASDLEGAPAFEDIAEELRARL-------AGSMVAAHNLSFDAGFLAAEFQRAGSTTPDQPAVCTLQLARHVLKGNEGYSLAACAAALGIDHPNAHRALADTRVTASVLA 208          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A3D1A2J9_9BACT (Exonuclease domain-containing protein n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3D1A2J9_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 4.690e-20
Identity = 60/163 (36.81%), Postives = 87/163 (53.37%), Query Frame = 0
Query:    9 DSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKI 171
            D ETTGLSP    + E+A +     ++  T    S LV+P G   P   S++HGIT+ M++D+PSF +V   +L+ +          + +AHN  FDLGFLR E  R+G   P      +L  +AR  W   S  L ++   L + ++  HRAL+DVE T KI
Sbjct:   19 DVETTGLSPRSARVCEVAAVSFLGAARVGT---LSELVNP-GVPIPAEVSKIHGITDAMVKDSPSFGQVAPRLLDLLE-------NAVVVAHNADFDLGFLREEFKRVGLKFPKLHVVDTLA-IARKNWKFQSNRLGNIAAELNISSQGWHRALADVEMTRKI 169          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A7V8AH58_9BACT (DNA polymerase III subunit epsilon n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A7V8AH58_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.350e-19
Identity = 60/163 (36.81%), Postives = 85/163 (52.15%), Query Frame = 0
Query:    9 DSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKI 171
            D ETTGLSP    + E+A +      +  T    + LV+P G   P A S +HGIT++M++D+PSF  V   +L  +          + + HN  FD+ FLR E  R+G   P      +L  +AR  W   S SL S+   L + +E  HRAL+DVETT K+
Sbjct:   22 DVETTGLSPRSARVCEVAAVSFRGAERLGT---LAELVNPGGP-IPPACSAIHGITDEMVRDSPSFGAVAPRLLAMLE-------NTVIVGHNADFDIRFLRAEFERVGLKFPGLPVVDTLA-IARKNWKFQSNSLGSIAAELSISSEGWHRALTDVETTRKV 172          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A3M1UT18_9GAMM (DNA polymerase III subunit epsilon n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1UT18_9GAMM)

HSP 1 Score: 95.9 bits (237), Expect = 1.610e-19
Identity = 75/203 (36.95%), Postives = 100/203 (49.26%), Query Frame = 0
Query:    7 IWDSETTGLSPAK-HHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRD---VARIIWPGHSASLASLCKLLRVHNE--EAHRALSDVETTSKI-LAKADDHLRNLSVR----MGNGEAAVGIQIR 198
            + D+ETTGL PA+ H I+EI  +EL    + PT+ +F   + P        A  VHGITN+ +QD P F  + +  L +V       G  + I HN  FD+GFL HELA +GE     +  C + D   +AR + PG   SL +LCK   V N   E H AL D E  + + LA        L V      G G  AV  +IR
Sbjct:    5 VLDTETTGLDPAEGHRIIEIGCVEL--VDRRPTRRTFHVYLQPD-REIDEGAVEVHGITNEFLQDKPRFADIVDEFLAFVE------GAELII-HNAPFDVGFLNHELALLGEDRGRIEDHCRILDTLALARRMHPGQRNSLDALCKRYGVDNSGRELHGALLDAEILADVYLAMTGGQASLLPVEEAEASGGGAEAVPDRIR 197          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A7K1A381_9ACTN (Exonuclease domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K1A381_9ACTN)

HSP 1 Score: 95.9 bits (237), Expect = 1.710e-19
Identity = 59/172 (34.30%), Postives = 85/172 (49.42%), Query Frame = 0
Query:    2 SRPIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKILA 173
            S P  + D ETTGLSPA+  ++EIA++   C         +S+LV P     P   + +HGI+   +  AP+FE + E + E +          +  AHNLSFD GFL  E  R G   PD    C+L+    ++      SLA+    L + +  AHRAL D   T+ +LA
Sbjct:   64 SLPFAVLDVETTGLSPARDRVIEIAVVR--CAPDGSFIDEWSTLVDPGRDPGP---THIHGISAADLNGAPTFEDIAEELRERL-------AGSMVAAHNLSFDAGFLAAEFQRAGSATPDQPAVCTLQLARYVLKDNEGYSLAACAAALGIDHPNAHRALPDTRVTASVLA 223          
BLAST of Gchil2941.t1 vs. uniprot
Match: A0A1J4SMH4_9BACT (Exonuclease domain-containing protein n=1 Tax=Elusimicrobia bacterium CG1_02_56_21 TaxID=1805132 RepID=A0A1J4SMH4_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.740e-19
Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 0
Query:    9 DSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPGTSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAHNLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKLLRVHNEEAHRALSDVETTSKI 171
            D ETTGLSP    + E+A +   C ++    LS   L++P G   P   SR+HGIT+ M++D+PSF  V   +L  +          + +AHN  FDLGFL+ E  R+G   P   +      +AR  W   S  L ++   L + NE  HRALSDVE T KI
Sbjct:   19 DVETTGLSPRSARVCEVAAIGF-CGAERVGTLS--ELINP-GLPIPPEVSRIHGITDSMVKDSPSFGTVAPRLLAMLE-------GSVLVAHNADFDLGFLKAECERVGLRFPKL-YVVDTLVIARKSWKFQSNRLGNIAGELNISNENWHRALSDVEMTRKI 169          
The following BLAST results are available for this feature:
BLAST of Gchil2941.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4A4_9FLOR2.450e-13358.89DNA polymerase III subunit epsilon n=1 Tax=Gracila... [more]
A0A1H9B3A1_9GAMM3.820e-2236.17DNA polymerase III subunit epsilon n=2 Tax=Ectothi... [more]
A0A2S9D9A0_9MICC1.170e-2135.88DEAD/DEAH box helicase n=1 Tax=Arthrobacter sp. MY... [more]
A0A2S5IUZ4_9MICC2.910e-2134.91DEAD/DEAH box helicase n=2 Tax=Arthrobacter pityoc... [more]
A0A6I3D1F3_9ACTN6.590e-2135.47Exonuclease domain-containing protein n=5 Tax=root... [more]
A0A3D1A2J9_9BACT4.690e-2036.81Exonuclease domain-containing protein n=1 Tax=Elus... [more]
A0A7V8AH58_9BACT1.350e-1936.81DNA polymerase III subunit epsilon n=1 Tax=Elusimi... [more]
A0A3M1UT18_9GAMM1.610e-1936.95DNA polymerase III subunit epsilon n=1 Tax=Gammapr... [more]
A0A7K1A381_9ACTN1.710e-1934.30Exonuclease domain-containing protein n=1 Tax=Acti... [more]
A0A1J4SMH4_9BACT1.740e-1938.04Exonuclease domain-containing protein n=1 Tax=Elus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 4..181
e-value: 9.3E-29
score: 111.5
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 7..172
e-value: 6.3E-23
score: 82.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..181
e-value: 1.8E-42
score: 147.3
NoneNo IPR availablePANTHERPTHR30231DNA POLYMERASE III SUBUNIT EPSILONcoord: 3..206
NoneNo IPR availableCDDcd06127DEDDhcoord: 7..173
e-value: 3.36003E-44
score: 147.447
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:393333..394352 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2941.t1Gchil2941.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000106_pilon 393333..394352 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2941.t1 ID=Gchil2941.t1|Name=Gchil2941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MSRPIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPG
TSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAH
NLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKL
LRVHNEEAHRALSDVETTSKILAKADDHLRNLSVRMGNGEAAVGIQIRHM
IENAAMNRRESMEPKRKNSAAVMTKGGAPTSISTNGAMMTRSRARMQKVP
SSKEQADLKAQELSDHFLTAVSIEDSKGDVEGEKTQPKYVTRMGHLWHAL
RSCQCLEMAVSIRRVTSVPQGLQPCVWCVSSVQNRRVRK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf