Gchil2941.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2941.t1
Unique NameGchil2941.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:393333..394352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1432055.GLUCORHAEAF1_15915
Preferred namednaQ
PFAMsRNase_T
Max annot lvl204441|Rhodospirillales
KEGG rclassRC02795
KEGG koko:K02342
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ModuleM00260
Evalue3e-21
EggNOG OGsCOG0847@1|root,COG0847@2|Bacteria,1MV8Z@1224|Proteobacteria,2TTFF@28211|Alphaproteobacteria,2JPQX@204441|Rhodospirillales
EC2.7.7.7
DescriptionDNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2941Gchil2941Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 393333..394352 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2941.t1.start1Gchil2941.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 393333..393335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2941.t1.CDS1Gchil2941.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 393333..394352 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2941.t1.exon1Gchil2941.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 393333..394352 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2941.t1.stop1Gchil2941.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 394350..394352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2941.t1Gchil2941.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 393333..394352 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2941.t1 ID=Gchil2941.t1|Name=Gchil2941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=340bp
MSRPIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPG
TSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAH
NLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKL
LRVHNEEAHRALSDVETTSKILAKADDHLRNLSVRMGNGEAAVGIQIRHM
IENAAMNRRESMEPKRKNSAAVMTKGGAPTSISTNGAMMTRSRARMQKVP
SSKEQADLKAQELSDHFLTAVSIEDSKGDVEGEKTQPKYVTRMGHLWHAL
RSCQCLEMAVSIRRVTSVPQGLQPCVWCVSSVQNRRVRK*
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spliced messenger RNA

>Gchil2941.t1 ID=Gchil2941.t1|Name=Gchil2941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000106_pilon:393333..394352+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGTCCGATTTTCATTTGGGATTCTGAAACTACTGGTTTGAGTCC
AGCGAAGCACCACATTGTCGAAATTGCCATTATGGAGCTACACTGTACTT
CGCAATCACCCACAAAACTCTCGTTCTCCAGTCTTGTACATCCACCTGGA
ACAAGCGCGCCACGTGCGGCGAGTCGCGTGCACGGTATAACAAATCAAAT
GATGCAAGATGCACCATCGTTTGAAAAAGTCTGGGAAGGAGTGCTTGAAT
ACGTGCACTATGTGTGTCACGAAAGAGGAACGCCAATCTTTATTGCGCAC
AATCTTTCATTCGACCTTGGATTTTTGAGACATGAACTCGCTCGCATTGG
TGAGCCATTACCGGACTGGGATTTCGCATGTTCCCTGAGAGATGTAGCTA
GGATTATCTGGCCGGGTCATTCCGCCAGCCTGGCTTCCCTATGTAAATTA
CTTCGAGTCCACAATGAAGAGGCTCACCGAGCGTTGAGTGATGTTGAAAC
CACATCAAAGATTCTTGCAAAGGCAGATGACCATCTCCGAAACCTTAGCG
TGAGGATGGGCAACGGAGAGGCGGCGGTAGGCATCCAAATTCGTCACATG
ATTGAGAACGCGGCAATGAACCGACGCGAATCCATGGAGCCGAAGAGAAA
AAATTCTGCCGCAGTCATGACGAAGGGGGGAGCCCCAACAAGTATTTCAA
CAAATGGCGCCATGATGACTCGTTCGAGGGCAAGGATGCAGAAAGTACCA
TCGTCGAAAGAACAAGCGGATTTGAAGGCACAGGAACTTTCCGACCACTT
TTTGACAGCTGTAAGCATTGAGGATAGCAAGGGTGATGTAGAAGGAGAGA
AAACTCAACCTAAATACGTCACACGAATGGGGCACTTATGGCACGCCTTG
AGAAGCTGTCAATGCCTCGAGATGGCAGTCAGTATTCGAAGAGTGACTTC
TGTTCCTCAAGGATTGCAGCCATGCGTATGGTGCGTTTCCAGCGTTCAGA
ACAGACGTGTTCGGAAATGA
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protein sequence of Gchil2941.t1

>Gchil2941.t1 ID=Gchil2941.t1|Name=Gchil2941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MSRPIFIWDSETTGLSPAKHHIVEIAIMELHCTSQSPTKLSFSSLVHPPG
TSAPRAASRVHGITNQMMQDAPSFEKVWEGVLEYVHYVCHERGTPIFIAH
NLSFDLGFLRHELARIGEPLPDWDFACSLRDVARIIWPGHSASLASLCKL
LRVHNEEAHRALSDVETTSKILAKADDHLRNLSVRMGNGEAAVGIQIRHM
IENAAMNRRESMEPKRKNSAAVMTKGGAPTSISTNGAMMTRSRARMQKVP
SSKEQADLKAQELSDHFLTAVSIEDSKGDVEGEKTQPKYVTRMGHLWHAL
RSCQCLEMAVSIRRVTSVPQGLQPCVWCVSSVQNRRVRK*
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mRNA from alignment at tig00000106_pilon:393333..394352+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2941.t1 ID=Gchil2941.t1|Name=Gchil2941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000106_pilon:393333..394352+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGTCCGATTTTCATTTGGGATTCTGAAACTACTGGTTTGAGTCC
AGCGAAGCACCACATTGTCGAAATTGCCATTATGGAGCTACACTGTACTT
CGCAATCACCCACAAAACTCTCGTTCTCCAGTCTTGTACATCCACCTGGA
ACAAGCGCGCCACGTGCGGCGAGTCGCGTGCACGGTATAACAAATCAAAT
GATGCAAGATGCACCATCGTTTGAAAAAGTCTGGGAAGGAGTGCTTGAAT
ACGTGCACTATGTGTGTCACGAAAGAGGAACGCCAATCTTTATTGCGCAC
AATCTTTCATTCGACCTTGGATTTTTGAGACATGAACTCGCTCGCATTGG
TGAGCCATTACCGGACTGGGATTTCGCATGTTCCCTGAGAGATGTAGCTA
GGATTATCTGGCCGGGTCATTCCGCCAGCCTGGCTTCCCTATGTAAATTA
CTTCGAGTCCACAATGAAGAGGCTCACCGAGCGTTGAGTGATGTTGAAAC
CACATCAAAGATTCTTGCAAAGGCAGATGACCATCTCCGAAACCTTAGCG
TGAGGATGGGCAACGGAGAGGCGGCGGTAGGCATCCAAATTCGTCACATG
ATTGAGAACGCGGCAATGAACCGACGCGAATCCATGGAGCCGAAGAGAAA
AAATTCTGCCGCAGTCATGACGAAGGGGGGAGCCCCAACAAGTATTTCAA
CAAATGGCGCCATGATGACTCGTTCGAGGGCAAGGATGCAGAAAGTACCA
TCGTCGAAAGAACAAGCGGATTTGAAGGCACAGGAACTTTCCGACCACTT
TTTGACAGCTGTAAGCATTGAGGATAGCAAGGGTGATGTAGAAGGAGAGA
AAACTCAACCTAAATACGTCACACGAATGGGGCACTTATGGCACGCCTTG
AGAAGCTGTCAATGCCTCGAGATGGCAGTCAGTATTCGAAGAGTGACTTC
TGTTCCTCAAGGATTGCAGCCATGCGTATGGTGCGTTTCCAGCGTTCAGA
ACAGACGTGTTCGGAAATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:393333..394352+

>Gchil2941.t1 ID=Gchil2941.t1|Name=Gchil2941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000106_pilon:393333..394352+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGTCCGATTTTCATTTGGGATTCTGAAACTACTGGTTTGAGTCC
AGCGAAGCACCACATTGTCGAAATTGCCATTATGGAGCTACACTGTACTT
CGCAATCACCCACAAAACTCTCGTTCTCCAGTCTTGTACATCCACCTGGA
ACAAGCGCGCCACGTGCGGCGAGTCGCGTGCACGGTATAACAAATCAAAT
GATGCAAGATGCACCATCGTTTGAAAAAGTCTGGGAAGGAGTGCTTGAAT
ACGTGCACTATGTGTGTCACGAAAGAGGAACGCCAATCTTTATTGCGCAC
AATCTTTCATTCGACCTTGGATTTTTGAGACATGAACTCGCTCGCATTGG
TGAGCCATTACCGGACTGGGATTTCGCATGTTCCCTGAGAGATGTAGCTA
GGATTATCTGGCCGGGTCATTCCGCCAGCCTGGCTTCCCTATGTAAATTA
CTTCGAGTCCACAATGAAGAGGCTCACCGAGCGTTGAGTGATGTTGAAAC
CACATCAAAGATTCTTGCAAAGGCAGATGACCATCTCCGAAACCTTAGCG
TGAGGATGGGCAACGGAGAGGCGGCGGTAGGCATCCAAATTCGTCACATG
ATTGAGAACGCGGCAATGAACCGACGCGAATCCATGGAGCCGAAGAGAAA
AAATTCTGCCGCAGTCATGACGAAGGGGGGAGCCCCAACAAGTATTTCAA
CAAATGGCGCCATGATGACTCGTTCGAGGGCAAGGATGCAGAAAGTACCA
TCGTCGAAAGAACAAGCGGATTTGAAGGCACAGGAACTTTCCGACCACTT
TTTGACAGCTGTAAGCATTGAGGATAGCAAGGGTGATGTAGAAGGAGAGA
AAACTCAACCTAAATACGTCACACGAATGGGGCACTTATGGCACGCCTTG
AGAAGCTGTCAATGCCTCGAGATGGCAGTCAGTATTCGAAGAGTGACTTC
TGTTCCTCAAGGATTGCAGCCATGCGTATGGTGCGTTTCCAGCGTTCAGA
ACAGACGTGTTCGGAAATGA
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