Gchil2822.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2822.t1
Unique NameGchil2822.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length764
Homology
BLAST of Gchil2822.t1 vs. uniprot
Match: A0A2V3IR46_9FLOR (Myb-like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR46_9FLOR)

HSP 1 Score: 308 bits (790), Expect = 8.830e-89
Identity = 174/312 (55.77%), Postives = 219/312 (70.19%), Query Frame = 0
Query:  455 SKQGPKTETKPYKTSAVRFADTTTPALRPRRNVSFDAE-SKTGGGAVFVREVALAESWSAKQRKEFERQRNCVPANEPRYWELVAAGVQGKTAAQCLELWESSWASPLAMKRKQVGFSDAG--SEPPKKKPKMSTPQVIKNFQKASKSKRGRNTAKYRTSLRRLADTFARDTEDDALEPEIATPKMACKLTSTRFDVPGLQDGTPGTEVRQKRRNAEKGGELATPEILKRGKSFGLKEADQYVSLFRQRLGTAAIVPTTKQGKPGVRQNLAKNPPPSITKACKVSDCGDGTSLSDAESLQDSELSCDGDLFF 763
            SK+ P++E    +  ++  AD      R R+ VSF  +  +   G   + E    E W+ +QR++FE QRN VPAN PRYWE +AAGV+GK+  QCL+LW+S+W SP+A K K+V     G   EP +KKPK+STPQ ++N QK SK+KRGRNTAKYR ++RRLADT ARDT+DDALEPEI TP  + K+T   F +P LQDGTPGTEVRQKRRNAE+GGE ATPEILKRGKSFGL+EADQYVSLFRQRLG A IV T+K+ KPGV +++    P +IT    VS+      LS+ +   DS +S DGDLFF
Sbjct:  616 SKKAPESE----RGGSIPVADAQVRGTRLRKKVSFGKQVERPARGTDDLSE--CKEEWTQEQREDFETQRNRVPANAPRYWESIAAGVEGKSVEQCLQLWKSTWGSPVAPKIKRVVSFTPGIADEPAEKKPKLSTPQAVRNVQKGSKTKRGRNTAKYRIAVRRLADTVARDTKDDALEPEIRTPVGSGKMTGGLFGLPDLQDGTPGTEVRQKRRNAEQGGERATPEILKRGKSFGLREADQYVSLFRQRLGNAPIVATSKKEKPGVDRHIGMKAPLNITPLHMVSE---DLLLSNTQDSDDSAVSDDGDLFF 918          
BLAST of Gchil2822.t1 vs. uniprot
Match: R7QEX0_CHOCR (Myb-like domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEX0_CHOCR)

HSP 1 Score: 163 bits (413), Expect = 1.660e-39
Identity = 106/241 (43.98%), Postives = 136/241 (56.43%), Query Frame = 0
Query:  471 VRFADTTTPALRPRRNVSFDAESKTGGGAVFVREVALAES-WSAKQRKEFERQRNCVPANEPRYWELVAAGVQGKTAAQCLELWESSWASPLAM--KRKQVGFSDAGSEPPKKKPKMSTPQVIKNFQKASKSKRGRNTAKYRTSLRRLADTFARDTEDDALEPEIATPKMACKLTSTRFDVPGLQD------GTPGTEVRQKRRNAEKGGELATPEILKRGKSFGLKEADQYVSLFRQRLG 702
            V FA +   A  P  ++  +A+  TGG     R     +  WSA QR+EF+RQRN V A+   YWE++A+GV+GKT  +C  LWESSWASP A   KR+ VG S        K+P+    +++   Q A+KSKRGRNTAK+R   R LA+  +  T D  LEP +     A  +  T    P LQ       GTPGTEVRQ R   E+     TPEIL RG+  G  EADQYVSLF++R G
Sbjct:  238 VAFAVSPMGATGPVASMPHEADRATGGKKPTARMKGSPKPRWSAAQREEFDRQRNSVAADASNYWEVIASGVRGKTGEECRLLWESSWASPQASGRKREAVGLS--------KRPE----EMMLEMQNAAKSKRGRNTAKFRRQARELAELVSAGTLDTVLEPCVPGAAAARDVVVT----PRLQGIGVACKGTPGTEVRQLRERNERAATATTPEILSRGRKIGFAEADQYVSLFKRRAG 462          
The following BLAST results are available for this feature:
BLAST of Gchil2822.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IR46_9FLOR8.830e-8955.77Myb-like domain-containing protein n=1 Tax=Gracila... [more]
R7QEX0_CHOCR1.660e-3943.98Myb-like domain-containing protein n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 509..556
e-value: 1.6E-7
score: 33.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 441..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..341
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..468
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 412..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 361..376

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:714355..716646 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2822.t1Gchil2822.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004406_pilon 714355..716646 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2822.t1 ID=Gchil2822.t1|Name=Gchil2822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=764bp
MLSPLPHRRHQRPSVVSAPPNRPIDASPASPASPASPAPPLPRKRKRLRF
DINLRPVHVPCPHPKRPRLSALRVDLRHRTRSSSPSVASADAQQAKPSNR
RTARAPHARTLSNTLRSASSRPHPRPGRRASLPLQTYAATQPPRKHAGNT
AFRKLSHTLIAIPIENSAQILTIKSNQRLQHHAVGSNPANANHSPALPPP
PKRERRNRSNHPVPPSKLAEPMSRKRSSALPKRARPRLQVGPRSVEPTPR
IQPSSVTRSASARALANNSLPDAVRRGSRLGDRPAERGIGPALDPAVVHE
AKQPAVVAPQGARRSTRLRNLGSRHLAKNNEAENTSQRPSRTRNESQKKD
ELLLKRADRKPQKHQVAKRKRPTVSKRKPASSASAAKPSAIANQERRGEQ
RAPRRSTRVKVAAASEKQTESANSNQPFIADTVVSKRNDRNGNSKSLKSV
RRDESKQGPKTETKPYKTSAVRFADTTTPALRPRRNVSFDAESKTGGGAV
FVREVALAESWSAKQRKEFERQRNCVPANEPRYWELVAAGVQGKTAAQCL
ELWESSWASPLAMKRKQVGFSDAGSEPPKKKPKMSTPQVIKNFQKASKSK
RGRNTAKYRTSLRRLADTFARDTEDDALEPEIATPKMACKLTSTRFDVPG
LQDGTPGTEVRQKRRNAEKGGELATPEILKRGKSFGLKEADQYVSLFRQR
LGTAAIVPTTKQGKPGVRQNLAKNPPPSITKACKVSDCGDGTSLSDAESL
QDSELSCDGDLFF*
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