Gchil2822.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2822.t1
Unique Name	Gchil2822.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	764

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:714355..716646 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2822	Gchil2822	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 714355..716646 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2822.t1.start1	Gchil2822.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 714355..714357 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2822.t1.CDS1	Gchil2822.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 714355..716646 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2822.t1.exon1	Gchil2822.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 714355..716646 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2822.t1.stop1	Gchil2822.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 716644..716646 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2822.t1	Gchil2822.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 714355..716646 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:714355..716646+
coding sequence from alignment at tig00004406_pilon:714355..716646+

mRNA sequence

>Gchil2822.t1 ID=Gchil2822.t1|Name=Gchil2822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=764bp
MLSPLPHRRHQRPSVVSAPPNRPIDASPASPASPASPAPPLPRKRKRLRF
DINLRPVHVPCPHPKRPRLSALRVDLRHRTRSSSPSVASADAQQAKPSNR
RTARAPHARTLSNTLRSASSRPHPRPGRRASLPLQTYAATQPPRKHAGNT
AFRKLSHTLIAIPIENSAQILTIKSNQRLQHHAVGSNPANANHSPALPPP
PKRERRNRSNHPVPPSKLAEPMSRKRSSALPKRARPRLQVGPRSVEPTPR
IQPSSVTRSASARALANNSLPDAVRRGSRLGDRPAERGIGPALDPAVVHE
AKQPAVVAPQGARRSTRLRNLGSRHLAKNNEAENTSQRPSRTRNESQKKD
ELLLKRADRKPQKHQVAKRKRPTVSKRKPASSASAAKPSAIANQERRGEQ
RAPRRSTRVKVAAASEKQTESANSNQPFIADTVVSKRNDRNGNSKSLKSV
RRDESKQGPKTETKPYKTSAVRFADTTTPALRPRRNVSFDAESKTGGGAV
FVREVALAESWSAKQRKEFERQRNCVPANEPRYWELVAAGVQGKTAAQCL
ELWESSWASPLAMKRKQVGFSDAGSEPPKKKPKMSTPQVIKNFQKASKSK
RGRNTAKYRTSLRRLADTFARDTEDDALEPEIATPKMACKLTSTRFDVPG
LQDGTPGTEVRQKRRNAEKGGELATPEILKRGKSFGLKEADQYVSLFRQR
LGTAAIVPTTKQGKPGVRQNLAKNPPPSITKACKVSDCGDGTSLSDAESL
QDSELSCDGDLFF*

spliced messenger RNA

>Gchil2822.t1 ID=Gchil2822.t1|Name=Gchil2822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00004406_pilon:714355..716646+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCCCCCTCCCTCACAGACGCCACCAACGCCCGAGCGTCGTGTC
CGCTCCTCCGAATCGCCCCATCGAtgcgtcgcctgcgtcgcctgcgtcgc
ctgcgtcgcctgcCCCGCCGCTCCCGCGAAAGAGAAAGCGCCTCCGCTTT
GATATCAACCTCCGACCCGTTCATGTGCCCTGCCCGCACCCCAAGCGCCC
CCGACTTTCTGCGCTTCGCGTCGATCTCCGCCATCGAACCCGCTCGTCTT
CGCCATCCGTCGCAAGCGCCGATGCGCAACAAGCCAAACCTTCGAACCGT
CGCACCGCACGCGCGCCTCACGCCCGAACACTCTCGAACACCCTTCGTTC
AGCTTCTTCACGCCCGCATCCGCGCCCCGGTCGCAGAGCCTCGCTTCCTC
TTCAAACTTACGCTGCGACGCAACCGCCTCGCAAACACGCCGGAAACACA
GCGTTTCGAAAATTGAGTCACACCCTTATTGCAATCCCCATCGAGAACTC
GGCTCAAATCCTGACCATCAAAAGTAACCAACGCTTGCAGCACCACGCCG
TTGGTAGTAATCCCGCCAATGCCAACCATTCCCCCGCTCTGCCACCGCCG
CCCAAACGTGAGAGACGGAACCGATCGAATCACCCCGTGCCGCCCTCGAA
GCTCGCGGAACCCATGTCGCGCAAGCGCTCGTCTGCGTTGCCCAAGCGCG
CGCGCCCGCGTTTGCAAGTTGGGCCCCGTAGTGTTGAGCCAACGCCTCGC
ATTCAACCCTCGTCTGTCACGCGCAGCGCTTCTGCGCGTGCTCTCGCAAA
CAACTCCTTGCCGGATGCCGTGCGTCGAGGCAGCCGCCTGGGCGACAGGC
CGGCTGAGCGTGGAATTGGGCCCGCGCTTGATCCTGCCGTGGTCCATGAG
GCAAAACAACCCGCGGTGGTCGCTCCTCAAGGAGCGCGAAGATCAACCAG
GCTTCGTAATTTGGGATCGAGACACCTTGCAAAGAACAACGAGGCGGAGA
ATACATCCCAACGTCCCTCTAGGACTCGAAATGAGTCCCAGAAGAAGGAT
GAGCTCTTGCTGAAAAGAGCAGACCGAAAACCACAAAAACACCAAGTAGC
GAAGAGGAAAAGGCCAACTGTATCGAAAAGAAAGCCCGCATCCAGCGCTT
CAGCTGCCAAACCCTCAGCCATAGCAAACCAAGAACGAAGGGGGGAGCAA
AGAGCACCGAGGCGCTCGACTCGCGTGAAAGTTGCTGCTGCATCTGAGAA
GCAAACTGAATCAGCAAACTCGAACCAGCCTTTCATTGCCGACACAGTAG
TATCGAAGCGCAATGACCGGAATGGAAACTCCAAATCACTAAAGTCTGTG
CGAAGAGATGAAAGCAAACAAGGCCCCAAGACTGAAACAAAGCCATACAA
AACATCGGCGGTCAGATTTGCGGACACAACCACACCGGCATTGAGACCTC
GAAGGAATGTGTCTTTTGATGCGGAGTCCAAGACTGGTGGCGGTGCTGTG
TTCGTTCGAGAAGTAGCGCTGGCGGAGAGCTGGTCCGCCAAACAGAGGAA
GGAATTTGAAAGACAGCGAAATTGCGTTCCAGCGAATGAGCCTCGCTACT
GGGAACTGGTGGCCGCCGGAGTGCAAGGGAAGACTGCTGCTCAGTGTCTG
GAGTTGTGGGAGTCATCATGGGCTTCCCCGCTCGCTATGAAGAGGAAACA
AGTGGGCTTCAGTGACGCTGGAAGTGAACCTCCGAAGAAGAAACCAAAAA
TGTCCACCCCGCAGGTCATCAAAAACTTCCAGAAAGCCTCGAAATCGAAG
CGAGGGCGTAACACAGCCAAGTACAGAACGTCCCTTCGCCGCCTGGCGGA
TACGTTTGCCCGTGATACTGAAGACGATGCCCTCGAACCTGAAATAGCAA
CGCCCAAAATGGCATGCAAGTTGACGAGCACAAGGTTTGATGTGCCCGGC
TTGCAAGATGGAACCCCCGGCACTGAAGTTCGTCAGAAGCGTCGAAACGC
CGAAAAGGGTGGTGAGCTAGCAACCCCGGAGATCCTAAAGCGTGGCAAGT
CCTTTGGCCTGAAGGAAGCGGACCAGTATGTTTCGTTGTTTAGACAGCGC
CTGGGCACGGCAGCCATTGTGCCTACCACCAAGCAGGGCAAACCAGGTGT
TCGACAGAATTTGGCAAAGAATCCCCCACCGAGCATTACAAAGGCCTGCA
AGGTGTCTGACTGTGGCGATGGGACTTCTCTTTCTGACGCAGAGAGTTTA
CAGGATAGCGAATTGTCGTGTGACGGAGACCTGTTTTTCTGA

protein sequence of Gchil2822.t1

>Gchil2822.t1 ID=Gchil2822.t1|Name=Gchil2822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=764bp
MLSPLPHRRHQRPSVVSAPPNRPIDASPASPASPASPAPPLPRKRKRLRF
DINLRPVHVPCPHPKRPRLSALRVDLRHRTRSSSPSVASADAQQAKPSNR
RTARAPHARTLSNTLRSASSRPHPRPGRRASLPLQTYAATQPPRKHAGNT
AFRKLSHTLIAIPIENSAQILTIKSNQRLQHHAVGSNPANANHSPALPPP
PKRERRNRSNHPVPPSKLAEPMSRKRSSALPKRARPRLQVGPRSVEPTPR
IQPSSVTRSASARALANNSLPDAVRRGSRLGDRPAERGIGPALDPAVVHE
AKQPAVVAPQGARRSTRLRNLGSRHLAKNNEAENTSQRPSRTRNESQKKD
ELLLKRADRKPQKHQVAKRKRPTVSKRKPASSASAAKPSAIANQERRGEQ
RAPRRSTRVKVAAASEKQTESANSNQPFIADTVVSKRNDRNGNSKSLKSV
RRDESKQGPKTETKPYKTSAVRFADTTTPALRPRRNVSFDAESKTGGGAV
FVREVALAESWSAKQRKEFERQRNCVPANEPRYWELVAAGVQGKTAAQCL
ELWESSWASPLAMKRKQVGFSDAGSEPPKKKPKMSTPQVIKNFQKASKSK
RGRNTAKYRTSLRRLADTFARDTEDDALEPEIATPKMACKLTSTRFDVPG
LQDGTPGTEVRQKRRNAEKGGELATPEILKRGKSFGLKEADQYVSLFRQR
LGTAAIVPTTKQGKPGVRQNLAKNPPPSITKACKVSDCGDGTSLSDAESL
QDSELSCDGDLFF*

mRNA from alignment at tig00004406_pilon:714355..716646+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2822.t1 ID=Gchil2822.t1|Name=Gchil2822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00004406_pilon:714355..716646+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTCCCCCCTCCCTCACAGACGCCACCAACGCCCGAGCGTCGTGTC
CGCTCCTCCGAATCGCCCCATCGAtgcgtcgcctgcgtcgcctgcgtcgc
ctgcgtcgcctgcCCCGCCGCTCCCGCGAAAGAGAAAGCGCCTCCGCTTT
GATATCAACCTCCGACCCGTTCATGTGCCCTGCCCGCACCCCAAGCGCCC
CCGACTTTCTGCGCTTCGCGTCGATCTCCGCCATCGAACCCGCTCGTCTT
CGCCATCCGTCGCAAGCGCCGATGCGCAACAAGCCAAACCTTCGAACCGT
CGCACCGCACGCGCGCCTCACGCCCGAACACTCTCGAACACCCTTCGTTC
AGCTTCTTCACGCCCGCATCCGCGCCCCGGTCGCAGAGCCTCGCTTCCTC
TTCAAACTTACGCTGCGACGCAACCGCCTCGCAAACACGCCGGAAACACA
GCGTTTCGAAAATTGAGTCACACCCTTATTGCAATCCCCATCGAGAACTC
GGCTCAAATCCTGACCATCAAAAGTAACCAACGCTTGCAGCACCACGCCG
TTGGTAGTAATCCCGCCAATGCCAACCATTCCCCCGCTCTGCCACCGCCG
CCCAAACGTGAGAGACGGAACCGATCGAATCACCCCGTGCCGCCCTCGAA
GCTCGCGGAACCCATGTCGCGCAAGCGCTCGTCTGCGTTGCCCAAGCGCG
CGCGCCCGCGTTTGCAAGTTGGGCCCCGTAGTGTTGAGCCAACGCCTCGC
ATTCAACCCTCGTCTGTCACGCGCAGCGCTTCTGCGCGTGCTCTCGCAAA
CAACTCCTTGCCGGATGCCGTGCGTCGAGGCAGCCGCCTGGGCGACAGGC
CGGCTGAGCGTGGAATTGGGCCCGCGCTTGATCCTGCCGTGGTCCATGAG
GCAAAACAACCCGCGGTGGTCGCTCCTCAAGGAGCGCGAAGATCAACCAG
GCTTCGTAATTTGGGATCGAGACACCTTGCAAAGAACAACGAGGCGGAGA
ATACATCCCAACGTCCCTCTAGGACTCGAAATGAGTCCCAGAAGAAGGAT
GAGCTCTTGCTGAAAAGAGCAGACCGAAAACCACAAAAACACCAAGTAGC
GAAGAGGAAAAGGCCAACTGTATCGAAAAGAAAGCCCGCATCCAGCGCTT
CAGCTGCCAAACCCTCAGCCATAGCAAACCAAGAACGAAGGGGGGAGCAA
AGAGCACCGAGGCGCTCGACTCGCGTGAAAGTTGCTGCTGCATCTGAGAA
GCAAACTGAATCAGCAAACTCGAACCAGCCTTTCATTGCCGACACAGTAG
TATCGAAGCGCAATGACCGGAATGGAAACTCCAAATCACTAAAGTCTGTG
CGAAGAGATGAAAGCAAACAAGGCCCCAAGACTGAAACAAAGCCATACAA
AACATCGGCGGTCAGATTTGCGGACACAACCACACCGGCATTGAGACCTC
GAAGGAATGTGTCTTTTGATGCGGAGTCCAAGACTGGTGGCGGTGCTGTG
TTCGTTCGAGAAGTAGCGCTGGCGGAGAGCTGGTCCGCCAAACAGAGGAA
GGAATTTGAAAGACAGCGAAATTGCGTTCCAGCGAATGAGCCTCGCTACT
GGGAACTGGTGGCCGCCGGAGTGCAAGGGAAGACTGCTGCTCAGTGTCTG
GAGTTGTGGGAGTCATCATGGGCTTCCCCGCTCGCTATGAAGAGGAAACA
AGTGGGCTTCAGTGACGCTGGAAGTGAACCTCCGAAGAAGAAACCAAAAA
TGTCCACCCCGCAGGTCATCAAAAACTTCCAGAAAGCCTCGAAATCGAAG
CGAGGGCGTAACACAGCCAAGTACAGAACGTCCCTTCGCCGCCTGGCGGA
TACGTTTGCCCGTGATACTGAAGACGATGCCCTCGAACCTGAAATAGCAA
CGCCCAAAATGGCATGCAAGTTGACGAGCACAAGGTTTGATGTGCCCGGC
TTGCAAGATGGAACCCCCGGCACTGAAGTTCGTCAGAAGCGTCGAAACGC
CGAAAAGGGTGGTGAGCTAGCAACCCCGGAGATCCTAAAGCGTGGCAAGT
CCTTTGGCCTGAAGGAAGCGGACCAGTATGTTTCGTTGTTTAGACAGCGC
CTGGGCACGGCAGCCATTGTGCCTACCACCAAGCAGGGCAAACCAGGTGT
TCGACAGAATTTGGCAAAGAATCCCCCACCGAGCATTACAAAGGCCTGCA
AGGTGTCTGACTGTGGCGATGGGACTTCTCTTTCTGACGCAGAGAGTTTA
CAGGATAGCGAATTGTCGTGTGACGGAGACCTGTTTTTCTGA

Coding sequence (CDS) from alignment at tig00004406_pilon:714355..716646+

>Gchil2822.t1 ID=Gchil2822.t1|Name=Gchil2822.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2292bp|location=Sequence derived from alignment at tig00004406_pilon:714355..716646+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTCCCCCCTCCCTCACAGACGCCACCAACGCCCGAGCGTCGTGTC
CGCTCCTCCGAATCGCCCCATCGAtgcgtcgcctgcgtcgcctgcgtcgc
ctgcgtcgcctgcCCCGCCGCTCCCGCGAAAGAGAAAGCGCCTCCGCTTT
GATATCAACCTCCGACCCGTTCATGTGCCCTGCCCGCACCCCAAGCGCCC
CCGACTTTCTGCGCTTCGCGTCGATCTCCGCCATCGAACCCGCTCGTCTT
CGCCATCCGTCGCAAGCGCCGATGCGCAACAAGCCAAACCTTCGAACCGT
CGCACCGCACGCGCGCCTCACGCCCGAACACTCTCGAACACCCTTCGTTC
AGCTTCTTCACGCCCGCATCCGCGCCCCGGTCGCAGAGCCTCGCTTCCTC
TTCAAACTTACGCTGCGACGCAACCGCCTCGCAAACACGCCGGAAACACA
GCGTTTCGAAAATTGAGTCACACCCTTATTGCAATCCCCATCGAGAACTC
GGCTCAAATCCTGACCATCAAAAGTAACCAACGCTTGCAGCACCACGCCG
TTGGTAGTAATCCCGCCAATGCCAACCATTCCCCCGCTCTGCCACCGCCG
CCCAAACGTGAGAGACGGAACCGATCGAATCACCCCGTGCCGCCCTCGAA
GCTCGCGGAACCCATGTCGCGCAAGCGCTCGTCTGCGTTGCCCAAGCGCG
CGCGCCCGCGTTTGCAAGTTGGGCCCCGTAGTGTTGAGCCAACGCCTCGC
ATTCAACCCTCGTCTGTCACGCGCAGCGCTTCTGCGCGTGCTCTCGCAAA
CAACTCCTTGCCGGATGCCGTGCGTCGAGGCAGCCGCCTGGGCGACAGGC
CGGCTGAGCGTGGAATTGGGCCCGCGCTTGATCCTGCCGTGGTCCATGAG
GCAAAACAACCCGCGGTGGTCGCTCCTCAAGGAGCGCGAAGATCAACCAG
GCTTCGTAATTTGGGATCGAGACACCTTGCAAAGAACAACGAGGCGGAGA
ATACATCCCAACGTCCCTCTAGGACTCGAAATGAGTCCCAGAAGAAGGAT
GAGCTCTTGCTGAAAAGAGCAGACCGAAAACCACAAAAACACCAAGTAGC
GAAGAGGAAAAGGCCAACTGTATCGAAAAGAAAGCCCGCATCCAGCGCTT
CAGCTGCCAAACCCTCAGCCATAGCAAACCAAGAACGAAGGGGGGAGCAA
AGAGCACCGAGGCGCTCGACTCGCGTGAAAGTTGCTGCTGCATCTGAGAA
GCAAACTGAATCAGCAAACTCGAACCAGCCTTTCATTGCCGACACAGTAG
TATCGAAGCGCAATGACCGGAATGGAAACTCCAAATCACTAAAGTCTGTG
CGAAGAGATGAAAGCAAACAAGGCCCCAAGACTGAAACAAAGCCATACAA
AACATCGGCGGTCAGATTTGCGGACACAACCACACCGGCATTGAGACCTC
GAAGGAATGTGTCTTTTGATGCGGAGTCCAAGACTGGTGGCGGTGCTGTG
TTCGTTCGAGAAGTAGCGCTGGCGGAGAGCTGGTCCGCCAAACAGAGGAA
GGAATTTGAAAGACAGCGAAATTGCGTTCCAGCGAATGAGCCTCGCTACT
GGGAACTGGTGGCCGCCGGAGTGCAAGGGAAGACTGCTGCTCAGTGTCTG
GAGTTGTGGGAGTCATCATGGGCTTCCCCGCTCGCTATGAAGAGGAAACA
AGTGGGCTTCAGTGACGCTGGAAGTGAACCTCCGAAGAAGAAACCAAAAA
TGTCCACCCCGCAGGTCATCAAAAACTTCCAGAAAGCCTCGAAATCGAAG
CGAGGGCGTAACACAGCCAAGTACAGAACGTCCCTTCGCCGCCTGGCGGA
TACGTTTGCCCGTGATACTGAAGACGATGCCCTCGAACCTGAAATAGCAA
CGCCCAAAATGGCATGCAAGTTGACGAGCACAAGGTTTGATGTGCCCGGC
TTGCAAGATGGAACCCCCGGCACTGAAGTTCGTCAGAAGCGTCGAAACGC
CGAAAAGGGTGGTGAGCTAGCAACCCCGGAGATCCTAAAGCGTGGCAAGT
CCTTTGGCCTGAAGGAAGCGGACCAGTATGTTTCGTTGTTTAGACAGCGC
CTGGGCACGGCAGCCATTGTGCCTACCACCAAGCAGGGCAAACCAGGTGT
TCGACAGAATTTGGCAAAGAATCCCCCACCGAGCATTACAAAGGCCTGCA
AGGTGTCTGACTGTGGCGATGGGACTTCTCTTTCTGACGCAGAGAGTTTA
CAGGATAGCGAATTGTCGTGTGACGGAGACCTGTTTTTCTGA