Gchil2440.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2440.t1
Unique NameGchil2440.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length270
Homology
BLAST of Gchil2440.t1 vs. uniprot
Match: A0A2V3IE58_9FLOR (AMSH-like ubiquitin thioesterase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE58_9FLOR)

HSP 1 Score: 359 bits (921), Expect = 1.340e-122
Identity = 179/265 (67.55%), Postives = 206/265 (77.74%), Query Frame = 0
Query:    1 MSLEKLFDRSPVLPPDPNISLARYLHTIRQNHQAAVAQPDEHRAALLHIRLLQLICKTLPSHPEYSLPENLSLLKQLRAFAHSSLEALEPYDRPLPRRTPLRVQLSVSLFELFERIAAEHTARAHCTLALLGGRLSPHPHVAALIIPSQTFATSYSSIRYETDVSQLFEVKKLLCFGFVHLCPTQKEPVLLPELKPQLLRHCTSVPEALAIVIAPASEKRLAVYSCGEEGNPIPAQHLDIRNDAQPAFKLYDLRPLAAARDEQQD 265
            M LE LFDRSPVLPPDPNISLARYLHTIRQN+QAA+ QPD  R+ALLHIRLLQLICKTLP+HPEYSLPEN  LLK+LR+ AH S EALE +D P+  R P RV +S SL +LFERIA++ T R H T+ LLGGR+ P PHVAAL++PSQT  T  SS+RYE DVSQL EVK LLCFG +H+ PTQ E  L  EL+  L  +  SVPEA AIVI PASEKR+  YSCG +G    A H+D+RND  P+FKLYDLRPLA ARDEQQ+
Sbjct:    1 MPLEDLFDRSPVLPPDPNISLARYLHTIRQNYQAAITQPDAQRSALLHIRLLQLICKTLPTHPEYSLPENKPLLKELRSIAHKSFEALEVFDEPVHHREPSRVDMSASLLDLFERIASDSTTRGHSTIGLLGGRMLPQPHVAALVMPSQTCGTICSSLRYENDVSQLMEVKDLLCFGLIHISPTQPEMGLPVELESYLSHYSNSVPEAFAIVIVPASEKRVRFYSCGNDGKVGVAHHVDVRNDGVPSFKLYDLRPLAIARDEQQE 265          
BLAST of Gchil2440.t1 vs. uniprot
Match: R7QCT3_CHOCR (USP8_dimer domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCT3_CHOCR)

HSP 1 Score: 198 bits (503), Expect = 2.370e-58
Identity = 129/323 (39.94%), Postives = 176/323 (54.49%), Query Frame = 0
Query:    1 MSLEKLFDRSPVLPPDPNISLARYLHTIRQNHQAA--VAQPDE-HRAALLHIRLLQLICKTLPSHPEYSLPENLSLLKQLRAFAHSSLEALEPY------DR---------PLPRRTPL--RVQLSVSLFELFERIAAEHTARAHCTLALLGGRLSPHPH-----------VAALIIPSQTFATSYSSIRYETDVSQLFEVKKLLCFGFVHLCPTQKEPVLLPELKPQLLRHCTSVPEALAIVIAPASEKRLAVYSCGE----------------------------EGNPI--PAQHLDIRNDAQPAFKLYDLRPLAAARDE 262
            M +EKLF++ PVLP +P IS+ARYL  IRQ  + A  V +  E  RAALL IR+LQLICKTLP+HPEY L EN S++K++R+ AH+    +E        DR         P+ RR     R++++ SL +LFE+IA EHTA    T+A+LGGR  P  +           + AL+IPSQ  ++  S IRY  D++ L + K L   GF+ +CP      L   +   L R     P A+ +VIAP    R+  +S  E                            +G PI   AQ +++RN+++PAFKLYDLRPLAAARDE
Sbjct:    1 MGIEKLFNKCPVLPAEPTISIARYLRNIRQTVRQANEVEEKGETERAALLQIRILQLICKTLPTHPEYELAENQSVVKEMRSIAHTGFANVERLANLLSDDRHVDQESEKEPVTRRRSRAQRIEIATSLLDLFEKIAVEHTANGLRTIAVLGGRPEPRQNGGDGTSVSCICITALVIPSQMPSSDKSRIRYGADITDLLDKKGLTHMGFIEMCPDLGRVALTSSV--MLARLQKKQPSAIGVVIAPQDTTRVQAFSVNEGYGLDYLLACAERNITPAEEVIPRGQPGKGKPIWSKAQEVELRNESEPAFKLYDLRPLAAARDE 321          
BLAST of Gchil2440.t1 vs. uniprot
Match: A0A7S1TBX2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBX2_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 4.790e-8
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 0
Query:    3 LEKLFDRSPVLPPDPNISLARYLHTIRQNHQAA---VAQPDEHRAALLHIRLLQLICKTLPSHPEYSLPENLSLLKQLRAFAHSSLEALE 89
            +E+LF++SPVL  D +IS+ RY     Q  + A   V++ D  RAALL++R+ QLI +T+P HP+Y   ++ + ++ +R+ A    + LE
Sbjct:    1 MEQLFEKSPVLNADSSISILRYKAIADQTMEEASERVSERDWERAALLYMRVAQLIVRTVPGHPDYEAADSQAPVRHMRSLARMCFDHLE 90          
The following BLAST results are available for this feature:
BLAST of Gchil2440.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IE58_9FLOR1.340e-12267.55AMSH-like ubiquitin thioesterase 1 n=1 Tax=Gracila... [more]
R7QCT3_CHOCR2.370e-5839.94USP8_dimer domain-containing protein n=1 Tax=Chond... [more]
A0A7S1TBX2_9RHOD4.790e-837.78Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 99..254
e-value: 8.7E-8
score: 33.9
NoneNo IPR availableGENE3D1.20.58.80coord: 2..98
e-value: 6.0E-6
score: 27.8
NoneNo IPR availablePANTHERPTHR12947AMSH-LIKE PROTEASEcoord: 102..219
NoneNo IPR availablePANTHERPTHR12947AMSH-LIKE PROTEASEcoord: 2..95
NoneNo IPR availablePANTHERPTHR12947:SF4FI19924P1coord: 102..219
NoneNo IPR availablePANTHERPTHR12947:SF4FI19924P1coord: 2..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:971344..972153 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2440.t1Gchil2440.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004400_pilon 971344..972153 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2440.t1 ID=Gchil2440.t1|Name=Gchil2440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=270bp
MSLEKLFDRSPVLPPDPNISLARYLHTIRQNHQAAVAQPDEHRAALLHIR
LLQLICKTLPSHPEYSLPENLSLLKQLRAFAHSSLEALEPYDRPLPRRTP
LRVQLSVSLFELFERIAAEHTARAHCTLALLGGRLSPHPHVAALIIPSQT
FATSYSSIRYETDVSQLFEVKKLLCFGFVHLCPTQKEPVLLPELKPQLLR
HCTSVPEALAIVIAPASEKRLAVYSCGEEGNPIPAQHLDIRNDAQPAFKL
YDLRPLAAARDEQQDTETS*
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