Gchil2440.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2440.t1
Unique NameGchil2440.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:971344..972153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708001.1
Preferred nameSTAMBP
PFAMsJAB,USP8_dimer
Max annot lvl2759|Eukaryota
KEGG koko:K11866,ko:K11867,ko:K12655
KEGG Pathwayko04144,ko04622,map04144,map04622
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0007034,GO:0007049,GO:0007154,GO:0007165,GO:0007259,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008270,GO:0008284,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0014066,GO:0014067,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019904,GO:0019941,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0030163,GO:0031410,GO:0031593,GO:0031974,GO:0031981,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0035871,GO:0036211,GO:0036459,GO:0042127,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043412,GO:0043523,GO:0043524,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046578,GO:0046580,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051179,GO:0051234,GO:0051301,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060548,GO:0061578,GO:0061640,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097696,GO:0097708,GO:0098590,GO:0101005,GO:0120113,GO:0140030,GO:0140096,GO:1901214,GO:1901215,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1903047
Evalue2.6e-17
EggNOG OGsCOG1310@1|root,KOG2880@2759|Eukaryota
EC3.4.19.12
Descriptionmetallopeptidase activity
COG categoryI
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2440Gchil2440Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 971344..972153 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2440.t1.stop1Gchil2440.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 971344..971346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2440.t1.CDS1Gchil2440.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 971344..972153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2440.t1.exon1Gchil2440.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 971344..972153 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2440.t1.start1Gchil2440.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 972151..972153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2440.t1Gchil2440.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 971344..972153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2440.t1 ID=Gchil2440.t1|Name=Gchil2440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp
MSLEKLFDRSPVLPPDPNISLARYLHTIRQNHQAAVAQPDEHRAALLHIR
LLQLICKTLPSHPEYSLPENLSLLKQLRAFAHSSLEALEPYDRPLPRRTP
LRVQLSVSLFELFERIAAEHTARAHCTLALLGGRLSPHPHVAALIIPSQT
FATSYSSIRYETDVSQLFEVKKLLCFGFVHLCPTQKEPVLLPELKPQLLR
HCTSVPEALAIVIAPASEKRLAVYSCGEEGNPIPAQHLDIRNDAQPAFKL
YDLRPLAAARDEQQDTETS*
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spliced messenger RNA

>Gchil2440.t1 ID=Gchil2440.t1|Name=Gchil2440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00004400_pilon:971344..972153- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTAGAAAAGCTCTTCGACCGATCCCCCGTTCTGCCCCCAGATCC
CAACATTTCTCTAGCCCGCTATCTCCACACCATTCGCCAAAACCATCAAG
CAGCTGTCGCCCAGCCAGATGAACACCGCGCCGCCCTGCTCCACATTCGA
CTTTTGCAATTAATCTGCAAGACCCTTCCGTCTCATCCCGAATACTCTCT
CCCCGAAAACCTCTCCCTCCTCAAGCAGCTTCGAGCTTTTGCTCACAGCA
GCCTCGAAGCCTTGGAACCCTACGATCGCCCGCTTCCACGTCGTACCCCC
TTGCGAGTCCAGCTTTCTGTATCGTTGTTTGAACTTTTCGAACGTATTGC
CGCTGAACATACTGCCCGTGCCCATTGCACCCTAGCCTTGTTGGGTGGCA
GGTTGAGTCCACACCCGCATGTTGCCGCTTTGATCATTCCCTCCCAGACG
TTTGCAACTTCCTACTCTTCTATACGCTACGAGACCGATGTGTCTCAGCT
GTTCGAGGTGAAGAAATTATTATGTTTTGGTTTTGTACACCTCTGCCCTA
CTCAAAAAGAGCCTGTGTTGCTGCCGGAATTGAAACCTCAACTGTTGCGC
CATTGTACTAGTGTGCCCGAGGCGCTTGCCATCGTCATCGCTCCGGCATC
GGAGAAACGGCTTGCAGTCTACTCGTGCGGGGAAGAGGGCAACCCAATTC
CTGCCCAACATCTAGATATTAGAAACGACGCTCAACCTGCCTTCAAGCTC
TACGATTTGCGACCTTTGGCTGCAGCGAGGGATGAGCAACAGGACACGGA
AACAAGTTGA
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protein sequence of Gchil2440.t1

>Gchil2440.t1 ID=Gchil2440.t1|Name=Gchil2440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=270bp
MSLEKLFDRSPVLPPDPNISLARYLHTIRQNHQAAVAQPDEHRAALLHIR
LLQLICKTLPSHPEYSLPENLSLLKQLRAFAHSSLEALEPYDRPLPRRTP
LRVQLSVSLFELFERIAAEHTARAHCTLALLGGRLSPHPHVAALIIPSQT
FATSYSSIRYETDVSQLFEVKKLLCFGFVHLCPTQKEPVLLPELKPQLLR
HCTSVPEALAIVIAPASEKRLAVYSCGEEGNPIPAQHLDIRNDAQPAFKL
YDLRPLAAARDEQQDTETS*
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mRNA from alignment at tig00004400_pilon:971344..972153-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2440.t1 ID=Gchil2440.t1|Name=Gchil2440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00004400_pilon:971344..972153- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCCTAGAAAAGCTCTTCGACCGATCCCCCGTTCTGCCCCCAGATCC
CAACATTTCTCTAGCCCGCTATCTCCACACCATTCGCCAAAACCATCAAG
CAGCTGTCGCCCAGCCAGATGAACACCGCGCCGCCCTGCTCCACATTCGA
CTTTTGCAATTAATCTGCAAGACCCTTCCGTCTCATCCCGAATACTCTCT
CCCCGAAAACCTCTCCCTCCTCAAGCAGCTTCGAGCTTTTGCTCACAGCA
GCCTCGAAGCCTTGGAACCCTACGATCGCCCGCTTCCACGTCGTACCCCC
TTGCGAGTCCAGCTTTCTGTATCGTTGTTTGAACTTTTCGAACGTATTGC
CGCTGAACATACTGCCCGTGCCCATTGCACCCTAGCCTTGTTGGGTGGCA
GGTTGAGTCCACACCCGCATGTTGCCGCTTTGATCATTCCCTCCCAGACG
TTTGCAACTTCCTACTCTTCTATACGCTACGAGACCGATGTGTCTCAGCT
GTTCGAGGTGAAGAAATTATTATGTTTTGGTTTTGTACACCTCTGCCCTA
CTCAAAAAGAGCCTGTGTTGCTGCCGGAATTGAAACCTCAACTGTTGCGC
CATTGTACTAGTGTGCCCGAGGCGCTTGCCATCGTCATCGCTCCGGCATC
GGAGAAACGGCTTGCAGTCTACTCGTGCGGGGAAGAGGGCAACCCAATTC
CTGCCCAACATCTAGATATTAGAAACGACGCTCAACCTGCCTTCAAGCTC
TACGATTTGCGACCTTTGGCTGCAGCGAGGGATGAGCAACAGGACACGGA
AACAAGTTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:971344..972153-

>Gchil2440.t1 ID=Gchil2440.t1|Name=Gchil2440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00004400_pilon:971344..972153- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCCTAGAAAAGCTCTTCGACCGATCCCCCGTTCTGCCCCCAGATCC
CAACATTTCTCTAGCCCGCTATCTCCACACCATTCGCCAAAACCATCAAG
CAGCTGTCGCCCAGCCAGATGAACACCGCGCCGCCCTGCTCCACATTCGA
CTTTTGCAATTAATCTGCAAGACCCTTCCGTCTCATCCCGAATACTCTCT
CCCCGAAAACCTCTCCCTCCTCAAGCAGCTTCGAGCTTTTGCTCACAGCA
GCCTCGAAGCCTTGGAACCCTACGATCGCCCGCTTCCACGTCGTACCCCC
TTGCGAGTCCAGCTTTCTGTATCGTTGTTTGAACTTTTCGAACGTATTGC
CGCTGAACATACTGCCCGTGCCCATTGCACCCTAGCCTTGTTGGGTGGCA
GGTTGAGTCCACACCCGCATGTTGCCGCTTTGATCATTCCCTCCCAGACG
TTTGCAACTTCCTACTCTTCTATACGCTACGAGACCGATGTGTCTCAGCT
GTTCGAGGTGAAGAAATTATTATGTTTTGGTTTTGTACACCTCTGCCCTA
CTCAAAAAGAGCCTGTGTTGCTGCCGGAATTGAAACCTCAACTGTTGCGC
CATTGTACTAGTGTGCCCGAGGCGCTTGCCATCGTCATCGCTCCGGCATC
GGAGAAACGGCTTGCAGTCTACTCGTGCGGGGAAGAGGGCAACCCAATTC
CTGCCCAACATCTAGATATTAGAAACGACGCTCAACCTGCCTTCAAGCTC
TACGATTTGCGACCTTTGGCTGCAGCGAGGGATGAGCAACAGGACACGGA
AACAAGTTGA
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