Gchil2369.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2369.t1
Unique NameGchil2369.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length759
Homology
BLAST of Gchil2369.t1 vs. uniprot
Match: A0A2V3IXZ5_9FLOR (Polycomb protein Su(Z)12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXZ5_9FLOR)

HSP 1 Score: 885 bits (2288), Expect = 1.770e-315
Identity = 453/699 (64.81%), Postives = 537/699 (76.82%), Query Frame = 0
Query:   68 PSSPPVLPALLELHRCGKPPFLVRNLRYVHADRRRAHRRIWDLSWTRPSYRSATGARHLLLTVRPSRCVLRTGTTRWLLGARPSASEDEYVPLLASLRLCLCVRQEGGHYVSFSLRDLTLRVWPAEDLAARLVQPLDVAVRETFDISAVLPVLSSDAEALSLVVELQ----RMGEVTTDNVNKLRGELVLWEKGSANGTVMPNGFVSLPLYMVKEAAIEPKHVVLERAVRQS----ISSFTSPDRSFSCVGAGAASIVLRLDGAPQHAITKALHLHRPNFMIKLTYTSQKVPEWDGIIRRDFVCPWCHRNCYRYRTLLSHFQMEHEHMKFQLTSLKSPTLFNENGQDSGAAARKKSFPYLVNFSVERVHPQPQSVHDQLPSSIPKRTRSGGGPAQLPEQVIYANPRRFGSYASDANNSTGAEKQVREGIERVSLKDSGAASDAHSVASTELYDNTRRDLLSTIDEELGNCCKHCLRPHIFAYEANTRFCSEWCEATYTANRDEDGVSLRGDSRFFPLSSYARSNSRKRFDFRRCLGHRKLFHVVSMTPMKEEHYDEDDPDSEDEVDQSWRGRLAIERTMYLENTTTTETLFMVMWNKFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAFLRLLHMHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERCLAGSNGRGGRVRRVGSRV 758
            PS+PP+LPALLE+HR G+PPFLVR L+YVH DR+RA RR+WDL WTRPSYRSA GARHL+LTVRPSRC+LR G    L  A P    D Y PLLA +RLCLCVRQ+ GHYVSFSLR+ +LRVWPAEDL  + + P D++ RE FD+SAVLP+LSS+A+ALS+VVEL      M +V+ D+  KLRGELV+WEKGSANGTV+PNG+VS+PLY+V + AI+PK VVLERAVRQ+    I+S          VGAGAASI+L L+GAPQHAI+K ++ H+P  M+ LTYTS+KVP+W+GI+R DFVCPWCHRNCYRYRTLL HFQMEH+ MKF L SL  P     + ++S     ++S P+LV FSVER+      V     SS+PKRTRS  G  QLPE V+Y NP R+GSY ++A  S  A++QVRE IER+SL++S   S+  S ASTELY+N RRDLLST+DEEL  CCKHC RPH  +++ N  FCS+WCEATY A+   D           PLS  A    RKR +FR+ LGHRKLFHVV+M P+KEEH+DEDDPDSEDEVDQSWRG LAIER M LE+  T ETL+MVMWNKFAHE+FPLP LYGDRFTRY LELFAIENRAHIIRLKLRLKF+ FL +LH+HGLIDSVAVLSIFQCLDGKKKRRDIALSSRPER + G NGRG R RR G+RV
Sbjct:   15 PSAPPILPALLEIHRRGRPPFLVRTLKYVHEDRKRARRRLWDLGWTRPSYRSAPGARHLILTVRPSRCILRPGIRDKLFEA-PREVRDAYTPLLARVRLCLCVRQQNGHYVSFSLRERSLRVWPAEDLFGKDLAPEDISAREAFDVSAVLPILSSEADALSIVVELAPDRGEMHDVSVDH-EKLRGELVVWEKGSANGTVVPNGYVSVPLYVVTDKAIQPKQVVLERAVRQANPPLINSPAGQGAPKGLVGAGAASILLHLEGAPQHAISKFVNNHKPRVMVTLTYTSKKVPQWNGIVRHDFVCPWCHRNCYRYRTLLCHFQMEHDQMKFALMSL-GPNKSAGSDEESDGLWDRQSVPFLVRFSVERIDQPCVRVIHAPSSSVPKRTRSSDGSVQLPEHVVYVNPDRYGSYMTNATTSAKADEQVREAIERISLRESRGLSEDLSAASTELYENRRRDLLSTVDEELSACCKHCQRPHDHSFKGNVNFCSDWCEATYMASPHLD----------IPLSDIASGRRRKRINFRQSLGHRKLFHVVTMAPVKEEHFDEDDPDSEDEVDQSWRGHLAIERVMALEDANTMETLWMVMWNKFAHEHFPLPGLYGDRFTRYGLELFAIENRAHIIRLKLRLKFIGFLHVLHVHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERSIVGGNGRGSRGRRNGNRV 700          
BLAST of Gchil2369.t1 vs. uniprot
Match: R7QS39_CHOCR (VEFS-Box domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS39_CHOCR)

HSP 1 Score: 372 bits (954), Expect = 2.400e-115
Identity = 246/629 (39.11%), Postives = 349/629 (55.48%), Query Frame = 0
Query:  154 EDEYVPLLASLRLCLCVRQEGGHYVSFSLRDLTLRVWPAEDLAARLVQPLDVAVRETFDISAVLPVLSSDAEALSLVVELQRMGEVTT-DNVNK--LRGELVLWEKGSANGTVMPNGFVSLPLYMVKEAA--IEPK----------HVVLERAVRQ------SISSFTSPDRSFSCVGAGA-------ASIVLRLDGAPQHAITKALHLHRPNFMIKLTYTSQKVPEWDGIIRRDFVCPWCHRNCYRYRTLLSHFQMEHEHMKFQLTSLKSPTLFNENGQDSGAAARKKSFPYLVNFSVERVHPQPQSVHDQLPSSIPKRTRSGGGPAQLPEQV-------IYANPRR---FGSYASDANNSTGAEKQVREGIERVSLKDSG--AASDAHSVASTELYDNTRRDLLSTIDEELGNCCKHCLRPHIFA-YEANTR--FCSEWCEATYTAN-RDEDGVSLRGDSRFFPLSSYARSNSRKRFDFRRCLGHRKLFHVVSMTPMKEEHYDEDDPDSEDEVDQSWRGRLAIERTMYLENTTTTETLFMVMWNKFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAFLRLLHMHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPE 738
            E  YVP  A LR+ L +  + G  V+F  R +T+R+WPAE +  + V+  DVA   TFD+SA + +  +   ALSL+++L    ++   +N +   LRGEL+L ++   +  V PNG VS+P+      A  + PK          H++ E +  +       ++S  +P  S    G          A+IVL + GA +HA        RP   I  +YTS++ P W+G++R DF+CPWCHRNCYR+RTLL+HFQ+EH+ M F L  L  P     N    G        P+ + F V     + +   +++     KR     G   L   +       +Y NP +   FG+   +  N +G +   R G+ RVSL D+   + SDA SV +    D+  RD+   + EEL N CK+C R    + Y AN R  FCSE+CE  +     DE G           LSS  R      F+++  LGH +L+HVVS+   KEEHYD +DPDSE+EVD SWR  L++ER  +LEN T  E L  +MWNKFAHEN+P+PSLY +R+TR+TLELFA+E    +   KLR++F+ FLR LH+HGLID+ A+LSI +CLDGKKKRRD+ +S+RPE
Sbjct:    6 ESPYVPPAAQLRVSLVLHTDTGR-VAFGHRAVTVRLWPAEHVE-KGVEVQDVAAAVTFDLSAAIALRGATPSALSLLLQLTSNSDMAKQENAHPATLRGELLLIDRVLGDKPV-PNGRVSVPMRFASADASPVPPKPQGKTPLSREHLLDEDSSEEITSGEERVASTRAPRASGKARGKVPNSSRQPDATIVLDVRGAIEHAKQALASPERPKVFITCSYTSKENPVWNGLVRHDFICPWCHRNCYRFRTLLNHFQVEHDDMGFALEGLPGPGSGPSNAHVQGV-------PFTLKFEVSATGSRSE---ERVRRESQKRNDGKDGERGLSHPMSNEDFEDVYVNPYKYPFFGTSTLEEKNESGTDI-ARNGMARVSLADTEGKSQSDAESVETDVEGDDPTRDVPDILKEELWNRCKNCQRGQPRSNYFANDRQSFCSEFCEIIFAKKMEDERGTPPAERGPMLGLSSLPRKPP---FNYQEKLGHLQLYHVVSVCEAKEEHYDPEDPDSEEEVDHSWRLDLSMERIRHLENATPKEKLLWMMWNKFAHENYPIPSLYAERYTRFTLELFALEYGKQVAFYKLRVQFVGFLRALHIHGLIDTTAILSIMKCLDGKKKRRDLGVSTRPE 617          
The following BLAST results are available for this feature:
BLAST of Gchil2369.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IXZ5_9FLOR1.770e-31564.81Polycomb protein Su(Z)12 n=1 Tax=Gracilariopsis ch... [more]
R7QS39_CHOCR2.400e-11539.11VEFS-Box domain-containing protein n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019135Polycomb protein, VEFS-BoxPFAMPF09733VEFS-Boxcoord: 594..715
e-value: 4.0E-12
score: 46.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..444
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..452
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 697..719
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 720..758
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..696
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 363..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:183792..186068 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2369.t1Gchil2369.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004400_pilon 183792..186068 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2369.t1 ID=Gchil2369.t1|Name=Gchil2369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=759bp
MSVQSGVGVTGSTDEREPSPNSSQEGYLHSLFSRLISESEPEQSKQNETN
CEPRAAPNSGAEPGCDRPSSPPVLPALLELHRCGKPPFLVRNLRYVHADR
RRAHRRIWDLSWTRPSYRSATGARHLLLTVRPSRCVLRTGTTRWLLGARP
SASEDEYVPLLASLRLCLCVRQEGGHYVSFSLRDLTLRVWPAEDLAARLV
QPLDVAVRETFDISAVLPVLSSDAEALSLVVELQRMGEVTTDNVNKLRGE
LVLWEKGSANGTVMPNGFVSLPLYMVKEAAIEPKHVVLERAVRQSISSFT
SPDRSFSCVGAGAASIVLRLDGAPQHAITKALHLHRPNFMIKLTYTSQKV
PEWDGIIRRDFVCPWCHRNCYRYRTLLSHFQMEHEHMKFQLTSLKSPTLF
NENGQDSGAAARKKSFPYLVNFSVERVHPQPQSVHDQLPSSIPKRTRSGG
GPAQLPEQVIYANPRRFGSYASDANNSTGAEKQVREGIERVSLKDSGAAS
DAHSVASTELYDNTRRDLLSTIDEELGNCCKHCLRPHIFAYEANTRFCSE
WCEATYTANRDEDGVSLRGDSRFFPLSSYARSNSRKRFDFRRCLGHRKLF
HVVSMTPMKEEHYDEDDPDSEDEVDQSWRGRLAIERTMYLENTTTTETLF
MVMWNKFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAF
LRLLHMHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERCLAGSNGRGGR
VRRVGSRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019135Polycomb_protein_VEFS-Box
IPR013087Znf_C2H2_type