Gchil2369.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2369.t1
Unique Name	Gchil2369.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	759

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:183792..186068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2369	Gchil2369	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 183792..186068 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2369.t1.start1	Gchil2369.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 183792..183794 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2369.t1.CDS1	Gchil2369.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 183792..186068 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2369.t1.exon1	Gchil2369.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 183792..186068 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2369.t1.stop1	Gchil2369.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 186066..186068 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2369.t1	Gchil2369.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 183792..186068 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:183792..186068+
coding sequence from alignment at tig00004400_pilon:183792..186068+

mRNA sequence

>Gchil2369.t1 ID=Gchil2369.t1|Name=Gchil2369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp
MSVQSGVGVTGSTDEREPSPNSSQEGYLHSLFSRLISESEPEQSKQNETN
CEPRAAPNSGAEPGCDRPSSPPVLPALLELHRCGKPPFLVRNLRYVHADR
RRAHRRIWDLSWTRPSYRSATGARHLLLTVRPSRCVLRTGTTRWLLGARP
SASEDEYVPLLASLRLCLCVRQEGGHYVSFSLRDLTLRVWPAEDLAARLV
QPLDVAVRETFDISAVLPVLSSDAEALSLVVELQRMGEVTTDNVNKLRGE
LVLWEKGSANGTVMPNGFVSLPLYMVKEAAIEPKHVVLERAVRQSISSFT
SPDRSFSCVGAGAASIVLRLDGAPQHAITKALHLHRPNFMIKLTYTSQKV
PEWDGIIRRDFVCPWCHRNCYRYRTLLSHFQMEHEHMKFQLTSLKSPTLF
NENGQDSGAAARKKSFPYLVNFSVERVHPQPQSVHDQLPSSIPKRTRSGG
GPAQLPEQVIYANPRRFGSYASDANNSTGAEKQVREGIERVSLKDSGAAS
DAHSVASTELYDNTRRDLLSTIDEELGNCCKHCLRPHIFAYEANTRFCSE
WCEATYTANRDEDGVSLRGDSRFFPLSSYARSNSRKRFDFRRCLGHRKLF
HVVSMTPMKEEHYDEDDPDSEDEVDQSWRGRLAIERTMYLENTTTTETLF
MVMWNKFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAF
LRLLHMHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERCLAGSNGRGGR
VRRVGSRV*

spliced messenger RNA

>Gchil2369.t1 ID=Gchil2369.t1|Name=Gchil2369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2277bp|location=Sequence derived from alignment at tig00004400_pilon:183792..186068+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTCCAGAGCGGTGTCGGCGTGACCGGTTCAACAGACGAACGCGA
ACCAAGCCCAAATAGTTCGCAGGAAGGATACTTGCATTCACTCTTCTCGA
GATTGATCTCGGAGTCGGAGCCGGAACAATCGAAACAAAACGAAACCAAT
TGCGAGCCCCGGGCTGCCCCCAACTCCGGAGCCGAGCCCGGTTGCGATCG
CCCCAGCTCGCCACCCGTCCTTCCAGCGCTGCTCGAGCTGCACCGTTGCG
GTAAGCCGCCCTTCCTCGTGCGCAACCTGCGCTACGTCCACGCTGACCGC
CGCCGCGCACACCGCCGCATCTGGGACCTCTCGTGGACGCGCCCATCATA
TCGCTCTGCCACCGGCGCGCGCCACCTGCTGCTCACCGTGCGCCCTAGTC
GCTGCGTGCTGCGTACTGGCACCACCCGCTGGCTCCTCGGCGCGCGCCCC
AGTGCCTCTGAAGACGAGTACGTGCCGTTGTTGGCCTCGCTCAGACTTTG
CCTGTGCGTGCGCCAAGAAGGCGGACACTACGTGTCTTTCTCGCTCAGAG
ATTTGACGCTGCGCGTTTGGCCCGCGGAGGATCTTGCTGCGCGCCTTGTG
CAGCCGCTGGATGTTGCCGTGCGGGAGACGTTTGATATCTCCGCTGTGCT
GCCTGTTTTGTCCTCGGATGCGGAGGCCTTGAGTCTGGTTGTTGAGCTTC
AGCGCATGGGTGAGGTGACGACTGATAACGTGAATAAGTTGCGGGGGGAG
CTTGTGCTTTGGGAGAAGGGTTCGGCAAATGGCACCGTTATGCCCAACGG
TTTTGTATCGCTCCCCTTGTACATGGTCAAAGAGGCAGCTATAGAGCCGA
AGCATGTTGTTCTGGAACGAGCTGTACGTCAATCGATCTCCTCGTTTACC
TCGCCTGATCGCTCTTTTTCGTGTGTGGGCGCTGGTGCTGCTAGTATCGT
TTTACGATTAGACGGAGCGCCGCAGCATGCCATTACGAAAGCACTGCATC
TACATCGACCCAATTTCATGATCAAGCTTACATATACGTCGCAGAAAGTG
CCGGAATGGGATGGTATCATACGTCGAGATTTTGTATGCCCCTGGTGTCA
TAGGAATTGCTACAGATACCGAACGCTTTTGTCTCACTTTCAAATGGAGC
ATGAACATATGAAGTTTCAGTTGACTAGTCTCAAGTCACCCACATTATTT
AATGAAAACGGTCAGGATTCGGGGGCTGCTGCGCGCAAGAAGTCCTTTCC
GTACTTGGTCAACTTCAGCGTTGAGCGCGTGCATCCTCAACCACAAAGCG
TCCACGATCAGTTGCCTTCGTCGATACCGAAAAGGACACGCTCGGGTGGC
GGCCCCGCGCAGTTGCCCGAACAAGTTATCTACGCCAATCCTCGGCGGTT
TGGCTCGTATGCTTCCGATGCGAACAACAGCACAGGCGCTGAAAAGCAGG
TCAGAGAAGGCATAGAACGCGTGTCACTCAAAGACAGTGGCGCGGCGTCC
GATGCACATTCCGTTGCTTCAACCGAATTATATGACAACACGCGTCGCGA
TCTTCTTTCAACAATTGATGAGGAGCTCGGTAATTGTTGCAAACACTGTC
TTAGACCGCATATCTTTGCGTACGAGGCGAACACTCGTTTTTGTTCAGAA
TGGTGTGAAGCTACTTACACGGCCAATCGCGATGAGGATGGAGTGAGTCT
GCGTGGGGACTCGAGGTTTTTCCCTCTCTCTTCATATGCGAGAAGCAATT
CGCGAAAGCGATTCGATTTTCGACGCTGTCTTGGGCATCGTAAGCTCTTC
CACGTCGTGAGCATGACGCCAATGAAGGAGGAGCATTACGACGAAGACGA
TCCCGATTCGGAAGATGAAGTAGACCAGTCTTGGCGTGGTCGCCTGGCTA
TTGAAAGGACCATGTACCTGGAGAACACGACTACAACGGAAACTCTATTT
ATGGTGATGTGGAACAAGTTTGCTCATGAGAATTTTCCTCTTCCGTCGCT
TTACGGCGATCGGTTTACTAGATATACACTGGAATTGTTCGCGATTGAGA
ACCGGGCTCATATCATTCGACTCAAACTACGGCTCAAGTTTCTGGCATTC
CTTCGCCTGCTGCACATGCATGGTTTGATCGATTCGGTAGCAGTGTTGTC
GATTTTCCAGTGCTTGGATGGAAAGAAGAAGCGACGTGACATTGCGTTGA
GTAGTCGGCCGGAGCGATGCCTGGCTGGAAGCAACGGAAGAGGCGGCCGT
GTTCGAAGAGTTGGAAGTCGAGTATAG

protein sequence of Gchil2369.t1

>Gchil2369.t1 ID=Gchil2369.t1|Name=Gchil2369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=759bp
MSVQSGVGVTGSTDEREPSPNSSQEGYLHSLFSRLISESEPEQSKQNETN
CEPRAAPNSGAEPGCDRPSSPPVLPALLELHRCGKPPFLVRNLRYVHADR
RRAHRRIWDLSWTRPSYRSATGARHLLLTVRPSRCVLRTGTTRWLLGARP
SASEDEYVPLLASLRLCLCVRQEGGHYVSFSLRDLTLRVWPAEDLAARLV
QPLDVAVRETFDISAVLPVLSSDAEALSLVVELQRMGEVTTDNVNKLRGE
LVLWEKGSANGTVMPNGFVSLPLYMVKEAAIEPKHVVLERAVRQSISSFT
SPDRSFSCVGAGAASIVLRLDGAPQHAITKALHLHRPNFMIKLTYTSQKV
PEWDGIIRRDFVCPWCHRNCYRYRTLLSHFQMEHEHMKFQLTSLKSPTLF
NENGQDSGAAARKKSFPYLVNFSVERVHPQPQSVHDQLPSSIPKRTRSGG
GPAQLPEQVIYANPRRFGSYASDANNSTGAEKQVREGIERVSLKDSGAAS
DAHSVASTELYDNTRRDLLSTIDEELGNCCKHCLRPHIFAYEANTRFCSE
WCEATYTANRDEDGVSLRGDSRFFPLSSYARSNSRKRFDFRRCLGHRKLF
HVVSMTPMKEEHYDEDDPDSEDEVDQSWRGRLAIERTMYLENTTTTETLF
MVMWNKFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAF
LRLLHMHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERCLAGSNGRGGR
VRRVGSRV*

mRNA from alignment at tig00004400_pilon:183792..186068+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2369.t1 ID=Gchil2369.t1|Name=Gchil2369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2277bp|location=Sequence derived from alignment at tig00004400_pilon:183792..186068+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGTCCAGAGCGGTGTCGGCGTGACCGGTTCAACAGACGAACGCGA
ACCAAGCCCAAATAGTTCGCAGGAAGGATACTTGCATTCACTCTTCTCGA
GATTGATCTCGGAGTCGGAGCCGGAACAATCGAAACAAAACGAAACCAAT
TGCGAGCCCCGGGCTGCCCCCAACTCCGGAGCCGAGCCCGGTTGCGATCG
CCCCAGCTCGCCACCCGTCCTTCCAGCGCTGCTCGAGCTGCACCGTTGCG
GTAAGCCGCCCTTCCTCGTGCGCAACCTGCGCTACGTCCACGCTGACCGC
CGCCGCGCACACCGCCGCATCTGGGACCTCTCGTGGACGCGCCCATCATA
TCGCTCTGCCACCGGCGCGCGCCACCTGCTGCTCACCGTGCGCCCTAGTC
GCTGCGTGCTGCGTACTGGCACCACCCGCTGGCTCCTCGGCGCGCGCCCC
AGTGCCTCTGAAGACGAGTACGTGCCGTTGTTGGCCTCGCTCAGACTTTG
CCTGTGCGTGCGCCAAGAAGGCGGACACTACGTGTCTTTCTCGCTCAGAG
ATTTGACGCTGCGCGTTTGGCCCGCGGAGGATCTTGCTGCGCGCCTTGTG
CAGCCGCTGGATGTTGCCGTGCGGGAGACGTTTGATATCTCCGCTGTGCT
GCCTGTTTTGTCCTCGGATGCGGAGGCCTTGAGTCTGGTTGTTGAGCTTC
AGCGCATGGGTGAGGTGACGACTGATAACGTGAATAAGTTGCGGGGGGAG
CTTGTGCTTTGGGAGAAGGGTTCGGCAAATGGCACCGTTATGCCCAACGG
TTTTGTATCGCTCCCCTTGTACATGGTCAAAGAGGCAGCTATAGAGCCGA
AGCATGTTGTTCTGGAACGAGCTGTACGTCAATCGATCTCCTCGTTTACC
TCGCCTGATCGCTCTTTTTCGTGTGTGGGCGCTGGTGCTGCTAGTATCGT
TTTACGATTAGACGGAGCGCCGCAGCATGCCATTACGAAAGCACTGCATC
TACATCGACCCAATTTCATGATCAAGCTTACATATACGTCGCAGAAAGTG
CCGGAATGGGATGGTATCATACGTCGAGATTTTGTATGCCCCTGGTGTCA
TAGGAATTGCTACAGATACCGAACGCTTTTGTCTCACTTTCAAATGGAGC
ATGAACATATGAAGTTTCAGTTGACTAGTCTCAAGTCACCCACATTATTT
AATGAAAACGGTCAGGATTCGGGGGCTGCTGCGCGCAAGAAGTCCTTTCC
GTACTTGGTCAACTTCAGCGTTGAGCGCGTGCATCCTCAACCACAAAGCG
TCCACGATCAGTTGCCTTCGTCGATACCGAAAAGGACACGCTCGGGTGGC
GGCCCCGCGCAGTTGCCCGAACAAGTTATCTACGCCAATCCTCGGCGGTT
TGGCTCGTATGCTTCCGATGCGAACAACAGCACAGGCGCTGAAAAGCAGG
TCAGAGAAGGCATAGAACGCGTGTCACTCAAAGACAGTGGCGCGGCGTCC
GATGCACATTCCGTTGCTTCAACCGAATTATATGACAACACGCGTCGCGA
TCTTCTTTCAACAATTGATGAGGAGCTCGGTAATTGTTGCAAACACTGTC
TTAGACCGCATATCTTTGCGTACGAGGCGAACACTCGTTTTTGTTCAGAA
TGGTGTGAAGCTACTTACACGGCCAATCGCGATGAGGATGGAGTGAGTCT
GCGTGGGGACTCGAGGTTTTTCCCTCTCTCTTCATATGCGAGAAGCAATT
CGCGAAAGCGATTCGATTTTCGACGCTGTCTTGGGCATCGTAAGCTCTTC
CACGTCGTGAGCATGACGCCAATGAAGGAGGAGCATTACGACGAAGACGA
TCCCGATTCGGAAGATGAAGTAGACCAGTCTTGGCGTGGTCGCCTGGCTA
TTGAAAGGACCATGTACCTGGAGAACACGACTACAACGGAAACTCTATTT
ATGGTGATGTGGAACAAGTTTGCTCATGAGAATTTTCCTCTTCCGTCGCT
TTACGGCGATCGGTTTACTAGATATACACTGGAATTGTTCGCGATTGAGA
ACCGGGCTCATATCATTCGACTCAAACTACGGCTCAAGTTTCTGGCATTC
CTTCGCCTGCTGCACATGCATGGTTTGATCGATTCGGTAGCAGTGTTGTC
GATTTTCCAGTGCTTGGATGGAAAGAAGAAGCGACGTGACATTGCGTTGA
GTAGTCGGCCGGAGCGATGCCTGGCTGGAAGCAACGGAAGAGGCGGCCGT
GTTCGAAGAGTTGGAAGTCGAGTATAG

Coding sequence (CDS) from alignment at tig00004400_pilon:183792..186068+

>Gchil2369.t1 ID=Gchil2369.t1|Name=Gchil2369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2277bp|location=Sequence derived from alignment at tig00004400_pilon:183792..186068+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGTCCAGAGCGGTGTCGGCGTGACCGGTTCAACAGACGAACGCGA
ACCAAGCCCAAATAGTTCGCAGGAAGGATACTTGCATTCACTCTTCTCGA
GATTGATCTCGGAGTCGGAGCCGGAACAATCGAAACAAAACGAAACCAAT
TGCGAGCCCCGGGCTGCCCCCAACTCCGGAGCCGAGCCCGGTTGCGATCG
CCCCAGCTCGCCACCCGTCCTTCCAGCGCTGCTCGAGCTGCACCGTTGCG
GTAAGCCGCCCTTCCTCGTGCGCAACCTGCGCTACGTCCACGCTGACCGC
CGCCGCGCACACCGCCGCATCTGGGACCTCTCGTGGACGCGCCCATCATA
TCGCTCTGCCACCGGCGCGCGCCACCTGCTGCTCACCGTGCGCCCTAGTC
GCTGCGTGCTGCGTACTGGCACCACCCGCTGGCTCCTCGGCGCGCGCCCC
AGTGCCTCTGAAGACGAGTACGTGCCGTTGTTGGCCTCGCTCAGACTTTG
CCTGTGCGTGCGCCAAGAAGGCGGACACTACGTGTCTTTCTCGCTCAGAG
ATTTGACGCTGCGCGTTTGGCCCGCGGAGGATCTTGCTGCGCGCCTTGTG
CAGCCGCTGGATGTTGCCGTGCGGGAGACGTTTGATATCTCCGCTGTGCT
GCCTGTTTTGTCCTCGGATGCGGAGGCCTTGAGTCTGGTTGTTGAGCTTC
AGCGCATGGGTGAGGTGACGACTGATAACGTGAATAAGTTGCGGGGGGAG
CTTGTGCTTTGGGAGAAGGGTTCGGCAAATGGCACCGTTATGCCCAACGG
TTTTGTATCGCTCCCCTTGTACATGGTCAAAGAGGCAGCTATAGAGCCGA
AGCATGTTGTTCTGGAACGAGCTGTACGTCAATCGATCTCCTCGTTTACC
TCGCCTGATCGCTCTTTTTCGTGTGTGGGCGCTGGTGCTGCTAGTATCGT
TTTACGATTAGACGGAGCGCCGCAGCATGCCATTACGAAAGCACTGCATC
TACATCGACCCAATTTCATGATCAAGCTTACATATACGTCGCAGAAAGTG
CCGGAATGGGATGGTATCATACGTCGAGATTTTGTATGCCCCTGGTGTCA
TAGGAATTGCTACAGATACCGAACGCTTTTGTCTCACTTTCAAATGGAGC
ATGAACATATGAAGTTTCAGTTGACTAGTCTCAAGTCACCCACATTATTT
AATGAAAACGGTCAGGATTCGGGGGCTGCTGCGCGCAAGAAGTCCTTTCC
GTACTTGGTCAACTTCAGCGTTGAGCGCGTGCATCCTCAACCACAAAGCG
TCCACGATCAGTTGCCTTCGTCGATACCGAAAAGGACACGCTCGGGTGGC
GGCCCCGCGCAGTTGCCCGAACAAGTTATCTACGCCAATCCTCGGCGGTT
TGGCTCGTATGCTTCCGATGCGAACAACAGCACAGGCGCTGAAAAGCAGG
TCAGAGAAGGCATAGAACGCGTGTCACTCAAAGACAGTGGCGCGGCGTCC
GATGCACATTCCGTTGCTTCAACCGAATTATATGACAACACGCGTCGCGA
TCTTCTTTCAACAATTGATGAGGAGCTCGGTAATTGTTGCAAACACTGTC
TTAGACCGCATATCTTTGCGTACGAGGCGAACACTCGTTTTTGTTCAGAA
TGGTGTGAAGCTACTTACACGGCCAATCGCGATGAGGATGGAGTGAGTCT
GCGTGGGGACTCGAGGTTTTTCCCTCTCTCTTCATATGCGAGAAGCAATT
CGCGAAAGCGATTCGATTTTCGACGCTGTCTTGGGCATCGTAAGCTCTTC
CACGTCGTGAGCATGACGCCAATGAAGGAGGAGCATTACGACGAAGACGA
TCCCGATTCGGAAGATGAAGTAGACCAGTCTTGGCGTGGTCGCCTGGCTA
TTGAAAGGACCATGTACCTGGAGAACACGACTACAACGGAAACTCTATTT
ATGGTGATGTGGAACAAGTTTGCTCATGAGAATTTTCCTCTTCCGTCGCT
TTACGGCGATCGGTTTACTAGATATACACTGGAATTGTTCGCGATTGAGA
ACCGGGCTCATATCATTCGACTCAAACTACGGCTCAAGTTTCTGGCATTC
CTTCGCCTGCTGCACATGCATGGTTTGATCGATTCGGTAGCAGTGTTGTC
GATTTTCCAGTGCTTGGATGGAAAGAAGAAGCGACGTGACATTGCGTTGA
GTAGTCGGCCGGAGCGATGCCTGGCTGGAAGCAACGGAAGAGGCGGCCGT
GTTCGAAGAGTTGGAAGTCGAGTATAG