Gchil2367.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2367.t1
Unique NameGchil2367.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length194
Homology
BLAST of Gchil2367.t1 vs. uniprot
Match: A0A2V3IV38_9FLOR (Protein CURVATURE THYLAKOID 1A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV38_9FLOR)

HSP 1 Score: 159 bits (403), Expect = 1.880e-46
Identity = 77/100 (77.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:   94 EYALDSDALKERALQVVSDVSQRPLFYTQILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGRARPQ 193
            EY++D+D LK+RA+ VV DVS+RPL+Y QI+AY+ AAL+A+TVLRA+V+AVDSIP+LPG LEL+GLSYTVWFFWRYV+FKESRQELLDE+EEFLGRARPQ
Sbjct:   79 EYSIDTDMLKQRAMDVVGDVSERPLYYGQIVAYASAALIALTVLRAVVSAVDSIPLLPGLLELVGLSYTVWFFWRYVIFKESRQELLDEIEEFLGRARPQ 178          
BLAST of Gchil2367.t1 vs. uniprot
Match: A0A1X6P8V0_PORUM (CAAD domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8V0_PORUM)

HSP 1 Score: 89.4 bits (220), Expect = 7.580e-19
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = 0
Query:   97 LDSDALKERALQVVSDVSQRPLFYTQILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGRAR 191
            +D+ AL  +A  V  DV+ RP +Y+ +   +   LVA  V  A+V+A+D IP+LP ALELIGL+YT WF +R++L +E+R+EL +EV++FLG++R
Sbjct:   98 VDTAALVAKAKAVADDVAARPGYYSSVAGVAGGGLVAFVVASAVVSALDKIPVLPSALELIGLAYTSWFVYRFLLQEETREELKEEVQDFLGKSR 192          
BLAST of Gchil2367.t1 vs. uniprot
Match: A0A1X6NX15_PORUM (CAAD domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NX15_PORUM)

HSP 1 Score: 81.6 bits (200), Expect = 5.320e-16
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   98 DSDALKERALQVVSDVSQRPLFYTQILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGRAR 191
            D DA+  RA ++ +DV  RP +Y  +  Y+    V   VL A+V A+D +P++P  L+LIGL+YT WF +RY+L +E+R+EL   +E+ +G+ R
Sbjct:   89 DPDAVAARARKLAADVQDRPGYYASVAGYATGGFVLFVVLSAVVGALDRLPVIPSMLQLIGLTYTGWFTYRYLLQEETREELKVIIEDLIGKTR 182          
BLAST of Gchil2367.t1 vs. uniprot
Match: A9TE40_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TE40_PHYPA)

HSP 1 Score: 70.1 bits (170), Expect = 3.660e-12
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 0
Query:  121 TQILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGR 189
            T +  Y+  ALV + +   IV A++S+P+LP  +ELIGL YT WF +RY+LFK SR+EL+D++EE  G+
Sbjct:   46 TTVAIYAGGALVTLWLSSIIVGAINSVPLLPKVMELIGLGYTGWFVYRYLLFKSSRKELVDDIEELKGK 114          
BLAST of Gchil2367.t1 vs. uniprot
Match: A0A834ZQ88_9MAGN (CAAD domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZQ88_9MAGN)

HSP 1 Score: 71.2 bits (173), Expect = 4.610e-12
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0
Query:  123 ILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEF 186
            IL Y    L A+ +  AIV A+DSIP+ P  +E++GL++T+WF +RY++FKE+R EL+D++EEF
Sbjct:  109 ILLYGSGGLAALWLASAIVGAIDSIPVFPKVMEVVGLAFTIWFSYRYLIFKENRDELVDKIEEF 172          
BLAST of Gchil2367.t1 vs. uniprot
Match: J3LGR9_ORYBR (CAAD domain-containing protein n=12 Tax=Oryza TaxID=4527 RepID=J3LGR9_ORYBR)

HSP 1 Score: 70.5 bits (171), Expect = 4.970e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0
Query:  123 ILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGR 189
            +L Y+  A+VAV +   IV AV+S+P+LP  +EL+GL YT WF +RY+LFKESR+EL D+VE    R
Sbjct:   82 VLTYAGGAIVAVWLSSVIVGAVNSVPLLPKLMELVGLGYTGWFVYRYLLFKESRKELADDVESLKKR 148          
BLAST of Gchil2367.t1 vs. uniprot
Match: A0A3L6RRY3_PANMI (Protein CURVATURE THYLAKOID 1A, chloroplastic-like n=2 Tax=Panicum TaxID=4539 RepID=A0A3L6RRY3_PANMI)

HSP 1 Score: 69.7 bits (169), Expect = 9.110e-12
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0
Query:  121 TQILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVE 184
            T ++ Y+  A+VA+ +   IV A++S+P+LP  +EL+GL YT WF +RY+LFKESR+EL D++E
Sbjct:   77 TTVITYAGGAIVALWLTSVIVGAINSVPLLPNIMELVGLGYTGWFVYRYLLFKESRKELADDIE 140          
BLAST of Gchil2367.t1 vs. uniprot
Match: A0A5P1F9T6_ASPOF (CAAD domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F9T6_ASPOF)

HSP 1 Score: 70.5 bits (171), Expect = 9.690e-12
Identity = 32/63 (50.79%), Postives = 50/63 (79.37%), Query Frame = 0
Query:  123 ILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEE 185
            +L Y   ALVAV    A+V A+DSIP++P ALE++GL+YT+WF +RY++FK++R+EL  ++E+
Sbjct:  113 VLIYGTGALVAVWFSSAVVGAIDSIPVVPKALEVVGLAYTIWFSYRYLIFKKNREELFAKIED 175          
BLAST of Gchil2367.t1 vs. uniprot
Match: A0A2K1K7R8_PHYPA (CAAD domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K7R8_PHYPA)

HSP 1 Score: 70.1 bits (170), Expect = 1.070e-11
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 0
Query:  121 TQILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGR 189
            T +  Y+  ALV + +   IV A++S+P+LP  +ELIGL YT WF +RY+LFK SR+EL+D++EE  G+
Sbjct:   95 TTVAIYAGGALVTLWLSSIIVGAINSVPLLPKVMELIGLGYTGWFVYRYLLFKSSRKELVDDIEELKGK 163          
BLAST of Gchil2367.t1 vs. uniprot
Match: UPI000B788791 (protein CURVATURE THYLAKOID 1A, chloroplastic-like isoform X2 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B788791)

HSP 1 Score: 69.7 bits (169), Expect = 1.230e-11
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 0
Query:  107 LQVVSDVSQRPLFYTQILAYSLAALVAVTVLRAIVAAVDSIPILPGALELIGLSYTVWFFWRYVLFKESRQELLDEVEE 185
            L +  DV   P     IL Y   A+VA+ +L AIV A+DSIP+LP  LE++GL Y+VWF  RY+LFK++R+EL  ++EE
Sbjct:   79 LDIDLDVEDSP----TILLYGGGAIVALWLLSAIVGAIDSIPVLPKVLEVVGLGYSVWFTTRYLLFKKNREELGSKIEE 153          
The following BLAST results are available for this feature:
BLAST of Gchil2367.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IV38_9FLOR1.880e-4677.00Protein CURVATURE THYLAKOID 1A, chloroplastic n=1 ... [more]
A0A1X6P8V0_PORUM7.580e-1947.37CAAD domain-containing protein n=1 Tax=Porphyra um... [more]
A0A1X6NX15_PORUM5.320e-1641.49CAAD domain-containing protein n=1 Tax=Porphyra um... [more]
A9TE40_PHYPA3.660e-1249.28Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A834ZQ88_9MAGN4.610e-1250.00CAAD domain-containing protein n=1 Tax=Tetracentro... [more]
J3LGR9_ORYBR4.970e-1253.73CAAD domain-containing protein n=12 Tax=Oryza TaxI... [more]
A0A3L6RRY3_PANMI9.110e-1250.00Protein CURVATURE THYLAKOID 1A, chloroplastic-like... [more]
A0A5P1F9T6_ASPOF9.690e-1250.79CAAD domain-containing protein n=1 Tax=Asparagus o... [more]
A0A2K1K7R8_PHYPA1.070e-1149.28CAAD domain-containing protein n=1 Tax=Physcomitri... [more]
UPI000B7887911.230e-1149.37protein CURVATURE THYLAKOID 1A, chloroplastic-like... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 121..186
e-value: 1.4E-22
score: 79.4
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 43..186
NoneNo IPR availablePANTHERPTHR33222:SF4PROTEIN CURVATURE THYLAKOID 1A, CHLOROPLASTICcoord: 43..186
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 168..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..122
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 142..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 123..141
NoneNo IPR availableTMHMMTMhelixcoord: 123..142
NoneNo IPR availableTMHMMTMhelixcoord: 147..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:173325..173906 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2367.t1Gchil2367.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004400_pilon 173325..173906 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2367.t1 ID=Gchil2367.t1|Name=Gchil2367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=194bp
MAPAARAPPLRPAFAAPFALRAWRAHRVVQSIVVHVVPFRVAVTTIPPRR
PPAMAAANPDDSASVAAAAAAPPSSAQFAATQDAPVTGYAPATEYALDSD
ALKERALQVVSDVSQRPLFYTQILAYSLAALVAVTVLRAIVAAVDSIPIL
PGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGRARPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025564CAAD_dom
IPR033344CURT1