Gchil2360.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2360.t1
Unique NameGchil2360.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length546
Homology
BLAST of Gchil2360.t1 vs. uniprot
Match: A0A2V3IV81_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV81_9FLOR)

HSP 1 Score: 585 bits (1507), Expect = 1.370e-201
Identity = 282/496 (56.85%), Postives = 360/496 (72.58%), Query Frame = 0
Query:    7 ESRMRTKCKELFKQSPPITLAGAKVSDSRSLGKLSLFHSASLGNKTGVAFVGGHISVLKWHPEVRGVLATAAHRSDQTVHEVLETYSGSAHIQLWSISNNTAICLGVVQHDGDCTWDLKWRPGQYEPISARSWCGTFAAALGDGRIMICRFSNTLRCSSAYDVVSGSANVLPCKKTILREGNERTVHGPARVVEWSLDGKRLLVGSVVGTVEVYESSSSESVWPKWCVPAQESIVTDIRWVNRYLFCSLGVSCVLRLRDIRDPVATLEQNAEGLAGSHSMCIAEPNVAVVGGDSGYLRVVRLYGTDNFRAKYPVRKVYVQGGSFRTMQSVSSPFRGTHQSLVFTGGCEGILHEVSFPRPLWLGYEECSISKTTAKQLLRWSVKRDSRGEHGTNITLQLTIGDSTSEGIHGGEEHASDVNQSGQKGNIRNPKHQRRKKVSGPCANDKPLFGSAYHQSVVITRVDINIHDKIIAVGIDGGIITWLQLQHQILESSLIQ 502
            +S   ++C EL K S P+ L+   +   + LG+L LF S  L  K G+AF GG +SVLKWHP  RG+LATAAH+S+Q  HEVL TYSG AHIQ+W +S  +A CLGV+ H+GDCTWDLKWRPG+ +   A  W GTFAAALGDG I+I  F N  + SS YD ++G   VLPC KT+LR   +  +  P RV+EWSLDG RLLVGSV G VEVYE+SS  S+WPKW +PAQESIV+D++W+N  LFC+LG+SCVLRLRDIRDPVAT+EQNAEGLAGS SM +AEPNVAVVGGD+GYLRVVRL GTDNF AK+PVR+VYVQG SFRTMQS+S P     +++++TGGCEGI+HE+SFPRPLW   ++C+IS+T   QLLRW V++           + LT+G S  +     +  +SD      +    +   +++ KV GP   DKPLFG +YHQ++V+TRVD++I D +IAVGIDGGI+TWL L H+ ++SSL +
Sbjct:    2 DSEQTSQCSELSKYSHPLLLSHRDLPKEKVLGRLKLFESLPLPGKGGIAFTGGRVSVLKWHPTARGILATAAHKSEQLFHEVLRTYSGPAHIQIWRMSGTSAACLGVIPHNGDCTWDLKWRPGRVKAEPANRWSGTFAAALGDGCILISTFENVTQTSSGYDSLTGKVRVLPCSKTLLRVHKKPFLRRPVRVLEWSLDGTRLLVGSVNGFVEVYEASSDSSIWPKWTIPAQESIVSDMKWLNPSLFCTLGISCVLRLRDIRDPVATIEQNAEGLAGSLSMSMAEPNVAVVGGDTGYLRVVRLRGTDNFNAKHPVRRVYVQGSSFRTMQSISVPSPKGSRTILYTGGCEGIVHEISFPRPLWPDQDQCTISRTRVGQLLRWCVEKCPAKAKEKGDIMHLTLGGSFEDAQDRNKGTSSDREGVDPRNGRSHSGFRKKTKVVGPHGTDKPLFGDSYHQAIVVTRVDVSIQDNMIAVGIDGGIVTWLPLDHESIDSSLAE 497          
BLAST of Gchil2360.t1 vs. uniprot
Match: R7QHN9_CHOCR (ANAPC4_WD40 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHN9_CHOCR)

HSP 1 Score: 386 bits (992), Expect = 7.450e-118
Identity = 216/510 (42.35%), Postives = 295/510 (57.84%), Query Frame = 0
Query:    7 ESRMRTKCKELFKQSPPITLAGAKVSDSRSLGKLSLFHSASLGNKTG-VAFVGGHISVLKWHPEVRGVLATAAHRSDQTVHEVLETYSGSAHIQLWSISNNTAICLGVVQHDGDCTWDLKWRPGQYEPISARSWCGTFAAALGDGRIMICRFSNTLRCSSAYDVVSGSANVLPCKKTILREGNERTVHGPARVVEWSLDGKRLLVGSVVGTVEVYESSSSESVWPKWCVPAQESIVTDIRWVNRYLFCSLGVSCVLRLRDIRDPVATLEQNAEGLAGSHSMCIAEPNVAVVGGDSGYLRVVRLYGTDNFRAKYPVRKVYVQGGSFRTMQSVSSPFRGTH-----QSLVFTGGCEGILHEVSFPRPLWLGYEECSISKTTAKQLLRWSVKRDSRGEHGTNI-TLQLTIGDSTSEGIHGGEE--HAS--DVNQSGQKGNI--------------RNPKHQRRKKVSGPCANDKPLFGSAYHQSVVITRVDINIHDKIIAVGIDGGIITWLQL 491
            E   +  C EL   S  + +A A        G+LSLF S  L +  G +A+VGG +S L +HP  +G+ A AAHRSDQ  H +L+ Y+GS HIQLW  + N   CLG+V+H+G+C WDLKWRP Q +   +  W GT AAALGDG +++ +  +  + S   +    +   L    T+LR         P RVVEWS +G  L+VG   G++EVY+++S +  WP+W +P  ES+V D+RW++    CSLG+SCVLRLRDIRDPV+TLEQN EGL+GS SM   EPNVA++GGD GYLRVVRL G D    +  V++V +Q GSFR M SV  P  G       Q+L +TGG +G+LHE  FPRP+W    EC I KT   + LRW+   + + E G  I TL+L + +S + G   G+E  H S  D    G  G +              R PK  R     G  A+    FG+ Y +   +TR  +++   I+AVGI GG++TW+ L
Sbjct:    7 EKNSKAVCPELRAFSDCVDVAEAGHEQLHKHGRLSLFESRVLPSGRGRIAYVGGSVSALSFHPWAKGICAVAAHRSDQPTHRILKCYAGSGHIQLWRFAENDTRCLGLVEHNGECVWDLKWRPEQSQRDGSTGWEGTLAAALGDGTVLVSKIDSFTKVSHGAE--KDAIKTLYPTSTLLRVNKSIASRSPVRVVEWSKEGNLLVVGCADGSIEVYDATSVDRTWPRWSIPGHESVVVDLRWLSETHLCSLGLSCVLRLRDIRDPVSTLEQNMEGLSGSMSMDAPEPNVAIIGGDYGYLRVVRLSGVDGMMPQRSVKRVRLQSGSFRDMCSV--PISGQEADSCSQTLFYTGGADGMLHECKFPRPIWTSANECEIGKTQVGERLRWTQTTEIK-EGGEEIRTLRLQLRNSLASG---GQELSHGSLLDTENGGLGGTLVDTLLQETSTSSASRKPKRSRTVGREG-LADAYSRFGAQYKELAGVTRTSLSVPSDILAVGISGGLVTWVPL 507          
The following BLAST results are available for this feature:
BLAST of Gchil2360.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IV81_9FLOR1.370e-20156.85Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHN9_CHOCR7.450e-11842.35ANAPC4_WD40 domain-containing protein n=1 Tax=Chon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 41..373
e-value: 1.0E-12
score: 49.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 507..545
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 411..449
NoneNo IPR availablePANTHERPTHR15052RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNITcoord: 48..355
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 89..361

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:155081..156718 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2360.t1Gchil2360.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004400_pilon 155081..156718 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2360.t1 ID=Gchil2360.t1|Name=Gchil2360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=546bp
MCFEPKESRMRTKCKELFKQSPPITLAGAKVSDSRSLGKLSLFHSASLGN
KTGVAFVGGHISVLKWHPEVRGVLATAAHRSDQTVHEVLETYSGSAHIQL
WSISNNTAICLGVVQHDGDCTWDLKWRPGQYEPISARSWCGTFAAALGDG
RIMICRFSNTLRCSSAYDVVSGSANVLPCKKTILREGNERTVHGPARVVE
WSLDGKRLLVGSVVGTVEVYESSSSESVWPKWCVPAQESIVTDIRWVNRY
LFCSLGVSCVLRLRDIRDPVATLEQNAEGLAGSHSMCIAEPNVAVVGGDS
GYLRVVRLYGTDNFRAKYPVRKVYVQGGSFRTMQSVSSPFRGTHQSLVFT
GGCEGILHEVSFPRPLWLGYEECSISKTTAKQLLRWSVKRDSRGEHGTNI
TLQLTIGDSTSEGIHGGEEHASDVNQSGQKGNIRNPKHQRRKKVSGPCAN
DKPLFGSAYHQSVVITRVDINIHDKIIAVGIDGGIITWLQLQHQILESSL
IQTNLPTTRKKRRRTTSNLQEENNEHNQGPSEVKYGEAHIEENNI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf