Gchil2360.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2360.t1
Unique NameGchil2360.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length546
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:155081..156718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010683772.1
Max annot lvl35493|Streptophyta
KEGG koko:K15200
Evalue6.36e-06
EggNOG OGsCOG0122@1|root,KOG1918@2759|Eukaryota,37PHK@33090|Viridiplantae,3GABB@35493|Streptophyta
DescriptionWD40 repeats
COG categoryL
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2360Gchil2360Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 155081..156718 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2360.t1.stop1Gchil2360.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 155081..155083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2360.t1.CDS1Gchil2360.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 155081..156718 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2360.t1.exon1Gchil2360.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 155081..156718 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2360.t1.start1Gchil2360.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 156716..156718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2360.t1Gchil2360.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 155081..156718 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2360.t1 ID=Gchil2360.t1|Name=Gchil2360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp
MCFEPKESRMRTKCKELFKQSPPITLAGAKVSDSRSLGKLSLFHSASLGN
KTGVAFVGGHISVLKWHPEVRGVLATAAHRSDQTVHEVLETYSGSAHIQL
WSISNNTAICLGVVQHDGDCTWDLKWRPGQYEPISARSWCGTFAAALGDG
RIMICRFSNTLRCSSAYDVVSGSANVLPCKKTILREGNERTVHGPARVVE
WSLDGKRLLVGSVVGTVEVYESSSSESVWPKWCVPAQESIVTDIRWVNRY
LFCSLGVSCVLRLRDIRDPVATLEQNAEGLAGSHSMCIAEPNVAVVGGDS
GYLRVVRLYGTDNFRAKYPVRKVYVQGGSFRTMQSVSSPFRGTHQSLVFT
GGCEGILHEVSFPRPLWLGYEECSISKTTAKQLLRWSVKRDSRGEHGTNI
TLQLTIGDSTSEGIHGGEEHASDVNQSGQKGNIRNPKHQRRKKVSGPCAN
DKPLFGSAYHQSVVITRVDINIHDKIIAVGIDGGIITWLQLQHQILESSL
IQTNLPTTRKKRRRTTSNLQEENNEHNQGPSEVKYGEAHIEENNI*
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spliced messenger RNA

>Gchil2360.t1 ID=Gchil2360.t1|Name=Gchil2360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004400_pilon:155081..156718- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTTCGAACCTAAGGAATCAAGAATGAGGACGAAGTGCAAGGAACT
CTTCAAACAGTCGCCACCCATTACTTTGGCAGGTGCAAAGGTATCAGACT
CGAGATCACTAGGCAAATTATCACTCTTCCATAGCGCTTCTCTTGGAAAC
AAAACTGGTGTGGCGTTCGTGGGCGGACATATAAGCGTTTTGAAATGGCA
TCCTGAAGTAAGGGGAGTTTTGGCTACTGCAGCGCACAGATCCGATCAAA
CTGTTCATGAAGTGCTTGAGACTTATAGTGGGTCAGCTCACATTCAGCTT
TGGTCCATTTCCAATAATACCGCTATCTGTTTGGGTGTAGTTCAACATGA
TGGTGACTGCACCTGGGATCTCAAGTGGAGGCCCGGACAGTATGAGCCCA
TCTCAGCGAGAAGTTGGTGCGGAACATTCGCCGCGGCTCTCGGAGACGGA
CGTATCATGATATGTCGCTTCAGTAACACTCTCCGATGTTCTTCCGCCTA
CGACGTAGTATCTGGTAGTGCAAACGTTTTACCTTGCAAAAAAACGATTC
TTCGAGAAGGTAATGAACGCACTGTACATGGACCTGCTCGTGTGGTGGAG
TGGTCCTTGGACGGCAAACGACTTCTTGTCGGCTCGGTGGTTGGTACTGT
GGAAGTATACGAGTCATCTTCTTCTGAATCAGTATGGCCAAAGTGGTGTG
TTCCAGCTCAGGAGTCAATTGTGACCGACATTAGATGGGTGAATCGCTAC
CTGTTTTGCTCTTTAGGAGTGTCATGTGTTCTTCGACTACGAGATATTCG
GGACCCGGTTGCTACTCTGGAACAGAATGCGGAGGGTCTGGCTGGAAGCC
ACAGTATGTGTATTGCCGAACCGAATGTCGCAGTAGTAGGAGGGGACTCG
GGTTATCTGCGGGTCGTGAGACTATATGGAACGGATAACTTCCGAGCAAA
GTATCCGGTACGTAAAGTATATGTGCAGGGGGGTTCTTTTCGGACAATGC
AATCCGTTAGCTCACCATTCAGAGGAACTCATCAAAGCCTTGTGTTCACT
GGCGGATGTGAAGGAATTCTACATGAGGTTTCTTTCCCTCGACCTTTGTG
GCTGGGATACGAAGAGTGCAGTATCTCCAAGACAACGGCCAAGCAGCTTC
TGAGATGGAGCGTTAAAAGGGATTCACGAGGAGAACATGGTACAAATATT
ACTCTGCAGCTGACTATTGGTGACTCGACTTCCGAGGGGATCCATGGCGG
TGAAGAGCATGCCAGCGATGTAAATCAAAGCGGTCAAAAAGGAAATATAA
GGAATCCTAAACATCAAAGACGAAAGAAAGTTTCTGGTCCTTGTGCGAAC
GACAAACCTTTATTTGGCTCTGCTTATCATCAATCTGTTGTTATAACTCG
GGTTGATATAAATATTCATGACAAAATAATAGCAGTTGGTATCGACGGAG
GTATCATTACTTGGTTGCAACTACAGCACCAAATCCTGGAATCATCGCTG
ATTCAAACTAACTTACCAACAACGAGGAAGAAGAGGAGGAGGACAACGAG
CAATTTACAGGAGGAGAACAATGAGCATAATCAAGGCCCCAGTGAAGTAA
AATACGGAGAAGCACATATCGAAGAGAACAATATCTGA
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protein sequence of Gchil2360.t1

>Gchil2360.t1 ID=Gchil2360.t1|Name=Gchil2360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=546bp
MCFEPKESRMRTKCKELFKQSPPITLAGAKVSDSRSLGKLSLFHSASLGN
KTGVAFVGGHISVLKWHPEVRGVLATAAHRSDQTVHEVLETYSGSAHIQL
WSISNNTAICLGVVQHDGDCTWDLKWRPGQYEPISARSWCGTFAAALGDG
RIMICRFSNTLRCSSAYDVVSGSANVLPCKKTILREGNERTVHGPARVVE
WSLDGKRLLVGSVVGTVEVYESSSSESVWPKWCVPAQESIVTDIRWVNRY
LFCSLGVSCVLRLRDIRDPVATLEQNAEGLAGSHSMCIAEPNVAVVGGDS
GYLRVVRLYGTDNFRAKYPVRKVYVQGGSFRTMQSVSSPFRGTHQSLVFT
GGCEGILHEVSFPRPLWLGYEECSISKTTAKQLLRWSVKRDSRGEHGTNI
TLQLTIGDSTSEGIHGGEEHASDVNQSGQKGNIRNPKHQRRKKVSGPCAN
DKPLFGSAYHQSVVITRVDINIHDKIIAVGIDGGIITWLQLQHQILESSL
IQTNLPTTRKKRRRTTSNLQEENNEHNQGPSEVKYGEAHIEENNI*
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mRNA from alignment at tig00004400_pilon:155081..156718-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2360.t1 ID=Gchil2360.t1|Name=Gchil2360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004400_pilon:155081..156718- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTTCGAACCTAAGGAATCAAGAATGAGGACGAAGTGCAAGGAACT
CTTCAAACAGTCGCCACCCATTACTTTGGCAGGTGCAAAGGTATCAGACT
CGAGATCACTAGGCAAATTATCACTCTTCCATAGCGCTTCTCTTGGAAAC
AAAACTGGTGTGGCGTTCGTGGGCGGACATATAAGCGTTTTGAAATGGCA
TCCTGAAGTAAGGGGAGTTTTGGCTACTGCAGCGCACAGATCCGATCAAA
CTGTTCATGAAGTGCTTGAGACTTATAGTGGGTCAGCTCACATTCAGCTT
TGGTCCATTTCCAATAATACCGCTATCTGTTTGGGTGTAGTTCAACATGA
TGGTGACTGCACCTGGGATCTCAAGTGGAGGCCCGGACAGTATGAGCCCA
TCTCAGCGAGAAGTTGGTGCGGAACATTCGCCGCGGCTCTCGGAGACGGA
CGTATCATGATATGTCGCTTCAGTAACACTCTCCGATGTTCTTCCGCCTA
CGACGTAGTATCTGGTAGTGCAAACGTTTTACCTTGCAAAAAAACGATTC
TTCGAGAAGGTAATGAACGCACTGTACATGGACCTGCTCGTGTGGTGGAG
TGGTCCTTGGACGGCAAACGACTTCTTGTCGGCTCGGTGGTTGGTACTGT
GGAAGTATACGAGTCATCTTCTTCTGAATCAGTATGGCCAAAGTGGTGTG
TTCCAGCTCAGGAGTCAATTGTGACCGACATTAGATGGGTGAATCGCTAC
CTGTTTTGCTCTTTAGGAGTGTCATGTGTTCTTCGACTACGAGATATTCG
GGACCCGGTTGCTACTCTGGAACAGAATGCGGAGGGTCTGGCTGGAAGCC
ACAGTATGTGTATTGCCGAACCGAATGTCGCAGTAGTAGGAGGGGACTCG
GGTTATCTGCGGGTCGTGAGACTATATGGAACGGATAACTTCCGAGCAAA
GTATCCGGTACGTAAAGTATATGTGCAGGGGGGTTCTTTTCGGACAATGC
AATCCGTTAGCTCACCATTCAGAGGAACTCATCAAAGCCTTGTGTTCACT
GGCGGATGTGAAGGAATTCTACATGAGGTTTCTTTCCCTCGACCTTTGTG
GCTGGGATACGAAGAGTGCAGTATCTCCAAGACAACGGCCAAGCAGCTTC
TGAGATGGAGCGTTAAAAGGGATTCACGAGGAGAACATGGTACAAATATT
ACTCTGCAGCTGACTATTGGTGACTCGACTTCCGAGGGGATCCATGGCGG
TGAAGAGCATGCCAGCGATGTAAATCAAAGCGGTCAAAAAGGAAATATAA
GGAATCCTAAACATCAAAGACGAAAGAAAGTTTCTGGTCCTTGTGCGAAC
GACAAACCTTTATTTGGCTCTGCTTATCATCAATCTGTTGTTATAACTCG
GGTTGATATAAATATTCATGACAAAATAATAGCAGTTGGTATCGACGGAG
GTATCATTACTTGGTTGCAACTACAGCACCAAATCCTGGAATCATCGCTG
ATTCAAACTAACTTACCAACAACGAGGAAGAAGAGGAGGAGGACAACGAG
CAATTTACAGGAGGAGAACAATGAGCATAATCAAGGCCCCAGTGAAGTAA
AATACGGAGAAGCACATATCGAAGAGAACAATATCTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:155081..156718-

>Gchil2360.t1 ID=Gchil2360.t1|Name=Gchil2360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00004400_pilon:155081..156718- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTTCGAACCTAAGGAATCAAGAATGAGGACGAAGTGCAAGGAACT
CTTCAAACAGTCGCCACCCATTACTTTGGCAGGTGCAAAGGTATCAGACT
CGAGATCACTAGGCAAATTATCACTCTTCCATAGCGCTTCTCTTGGAAAC
AAAACTGGTGTGGCGTTCGTGGGCGGACATATAAGCGTTTTGAAATGGCA
TCCTGAAGTAAGGGGAGTTTTGGCTACTGCAGCGCACAGATCCGATCAAA
CTGTTCATGAAGTGCTTGAGACTTATAGTGGGTCAGCTCACATTCAGCTT
TGGTCCATTTCCAATAATACCGCTATCTGTTTGGGTGTAGTTCAACATGA
TGGTGACTGCACCTGGGATCTCAAGTGGAGGCCCGGACAGTATGAGCCCA
TCTCAGCGAGAAGTTGGTGCGGAACATTCGCCGCGGCTCTCGGAGACGGA
CGTATCATGATATGTCGCTTCAGTAACACTCTCCGATGTTCTTCCGCCTA
CGACGTAGTATCTGGTAGTGCAAACGTTTTACCTTGCAAAAAAACGATTC
TTCGAGAAGGTAATGAACGCACTGTACATGGACCTGCTCGTGTGGTGGAG
TGGTCCTTGGACGGCAAACGACTTCTTGTCGGCTCGGTGGTTGGTACTGT
GGAAGTATACGAGTCATCTTCTTCTGAATCAGTATGGCCAAAGTGGTGTG
TTCCAGCTCAGGAGTCAATTGTGACCGACATTAGATGGGTGAATCGCTAC
CTGTTTTGCTCTTTAGGAGTGTCATGTGTTCTTCGACTACGAGATATTCG
GGACCCGGTTGCTACTCTGGAACAGAATGCGGAGGGTCTGGCTGGAAGCC
ACAGTATGTGTATTGCCGAACCGAATGTCGCAGTAGTAGGAGGGGACTCG
GGTTATCTGCGGGTCGTGAGACTATATGGAACGGATAACTTCCGAGCAAA
GTATCCGGTACGTAAAGTATATGTGCAGGGGGGTTCTTTTCGGACAATGC
AATCCGTTAGCTCACCATTCAGAGGAACTCATCAAAGCCTTGTGTTCACT
GGCGGATGTGAAGGAATTCTACATGAGGTTTCTTTCCCTCGACCTTTGTG
GCTGGGATACGAAGAGTGCAGTATCTCCAAGACAACGGCCAAGCAGCTTC
TGAGATGGAGCGTTAAAAGGGATTCACGAGGAGAACATGGTACAAATATT
ACTCTGCAGCTGACTATTGGTGACTCGACTTCCGAGGGGATCCATGGCGG
TGAAGAGCATGCCAGCGATGTAAATCAAAGCGGTCAAAAAGGAAATATAA
GGAATCCTAAACATCAAAGACGAAAGAAAGTTTCTGGTCCTTGTGCGAAC
GACAAACCTTTATTTGGCTCTGCTTATCATCAATCTGTTGTTATAACTCG
GGTTGATATAAATATTCATGACAAAATAATAGCAGTTGGTATCGACGGAG
GTATCATTACTTGGTTGCAACTACAGCACCAAATCCTGGAATCATCGCTG
ATTCAAACTAACTTACCAACAACGAGGAAGAAGAGGAGGAGGACAACGAG
CAATTTACAGGAGGAGAACAATGAGCATAATCAAGGCCCCAGTGAAGTAA
AATACGGAGAAGCACATATCGAAGAGAACAATATCTGA
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