Gchil2283.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2283.t1
Unique NameGchil2283.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length202
Homology
BLAST of Gchil2283.t1 vs. uniprot
Match: A0A2V3IHN8_9FLOR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHN8_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 8.650e-49
Identity = 94/206 (45.63%), Postives = 129/206 (62.62%), Query Frame = 0
Query:    2 RTRHYWLLLSAAYGILNAGAKWKEITDTFLRDIGVLLLEYVPQLFYRRFSRERLTLAVELVDDILFAAPRHRLTQVINRVKDDYMLGTVVYGSHSEK----------EFCNTIHGDHKLQCFELLVISRLRRKEPEDTLKNNEKARFGSLNSSIGWLGIAASQCRAHAASFIQQKKPLPYVKDLVTQVYVLRGLKKRGTTVSYCKP 197
            R R YWLLL+AAYG +NA AKW++++D  LR +G L L +VPQLFYR        + V++V+D+LFAAPRH +  +I+ ++ D+ LGT+V+   + +          E+  T+HG+ K Q FE   I R RR++ ++ L   +   F SLNSSIGWL IAAS   A A+S +QQK P   VK LV+Q  VL  LKKRGT   Y +P
Sbjct:  579 RYRFYWLLLTAAYGFVNASAKWQQLSDNLLRSLGFLQLVWVPQLFYRLQEEALTCVTVKVVEDVLFAAPRHVVEDIISLIQQDFQLGTIVFAPGTFQFYGLTVTQYDEYSVTVHGEDKFQSFEPFPIDRTRRRKVDEPLNQLKLRAFWSLNSSIGWLSIAASPFCAIASSLLQQKGPYVAVKHLVSQFNVLCNLKKRGTCARYHRP 784          
BLAST of Gchil2283.t1 vs. uniprot
Match: A0A2V3J4G1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4G1_9FLOR)

HSP 1 Score: 166 bits (419), Expect = 3.360e-46
Identity = 89/206 (43.20%), Postives = 126/206 (61.17%), Query Frame = 0
Query:    2 RTRHYWLLLSAAYGILNAGAKWKEITDTFLRDIGVLLLEYVPQLFYRRFSRERLTLAVELVDDILFAAPRHRLTQVINRVKDDYMLGTVVYGSHSEK----------EFCNTIHGDHKLQCFELLVISRLRRKEPEDTLKNNEKARFGSLNSSIGWLGIAASQCRAHAASFIQQKKPLPYVKDLVTQVYVLRGLKKRGTTVSYCKP 197
            R   YWL L+AAYG ++  A W+++++  LR +G L L +VPQLF+R        +AV++VDD+LFAAPRH +  +I+ ++ D+ LGT+V+   + +          ++  T+HGD KLQ FE   I R R ++ ++     E   F SLNSSIGWLGIAAS  RA A+S +QQK P   VK LV+Q   LR LKKR T   + +P
Sbjct:   10 RCHFYWLPLTAAYGPVDDSANWQQLSENLLRSLGFLQLVWVPQLFHRLQEDGLTCVAVKIVDDVLFAAPRHVIEHIISWIQQDFQLGTIVFAPGTFQFYGLTVTQYDDYSVTVHGDDKLQSFEPFPIDRNRHRQVDEPFNQLELRVFRSLNSSIGWLGIAASPFRAIASSSLQQKGPHVTVKHLVSQCNALRNLKKRRTCALFHRP 215          
BLAST of Gchil2283.t1 vs. uniprot
Match: A0A2V3ICN1_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICN1_9FLOR)

HSP 1 Score: 96.3 bits (238), Expect = 4.380e-21
Identity = 65/175 (37.14%), Postives = 88/175 (50.29%), Query Frame = 0
Query:   33 DIGVLLLEYVPQLFYRRFSRERLTLAVELVDDILFAAPRHRLTQVINRVKDDYMLGTVVYGSH----------SEKEFCNTIHGDHKLQCFELLVISRLRRKEPEDTLKNNEKARFGSLNSSIGWLGIAASQCRAHAASFIQQKKPLPYVKDLVTQVYVLRGLKKRGTTVSYCKP 197
            +IG   L YVPQ FY + SR    LAV++VDDILFAA R+RL+ VI R++ +Y LGT+V+G               ++  T++G+HKL   E L + R+ R  PE                                       +PLP VKDLVTQ+ VL+ LKK+ TTV Y +P
Sbjct:    2 NIGFTQLIYVPQFFYMKKSRGLDILAVKVVDDILFAATRNRLSTVIERIQGEYKLGTIVFGPGFIQFYGLEILPRDDYNITVNGEHKL---EGLPLPRIDRMRPE---------------------------------------RPLPRVKDLVTQLNVLKTLKKKSTTVRYLQP 134          
The following BLAST results are available for this feature:
BLAST of Gchil2283.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHN8_9FLOR8.650e-4945.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2V3J4G1_9FLOR3.360e-4643.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICN1_9FLOR4.380e-2137.14Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:854957..855562 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2283.t1Gchil2283.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004419_pilon 854957..855562 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2283.t1 ID=Gchil2283.t1|Name=Gchil2283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MRTRHYWLLLSAAYGILNAGAKWKEITDTFLRDIGVLLLEYVPQLFYRRF
SRERLTLAVELVDDILFAAPRHRLTQVINRVKDDYMLGTVVYGSHSEKEF
CNTIHGDHKLQCFELLVISRLRRKEPEDTLKNNEKARFGSLNSSIGWLGI
AASQCRAHAASFIQQKKPLPYVKDLVTQVYVLRGLKKRGTTVSYCKPLRL
K*
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