Gchil2143.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2143.t1
Unique NameGchil2143.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length176
Homology
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A2V3ISA5_9FLOR (Photosystem II lipoprotein Psb27 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA5_9FLOR)

HSP 1 Score: 231 bits (590), Expect = 3.900e-75
Identity = 133/174 (76.44%), Postives = 139/174 (79.89%), Query Frame = 0
Query:    6 AFASSTFLA----SPPTPHVTSTVSSKPLVVMSTTTPLSRRAFLASTLLTTTALTLPNAAHAFGGRKTSMTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            AFASSTFL     SP    +  T   KP V MS   PLSRRAFLAS L+    L LP+ + AFG RKT+MTGDYK DAAQVL DMRAACDLGRGAPGMAE V KTR EMNDFVALYRRND V+GSTSFSTLYTAINTLSGHYASYGS YPVPEKRKKRLSQQFSEIDRALSRGR
Sbjct:    6 AFASSTFLGANLKSPINAVLPLTSPHKPSVTMSVAEPLSRRAFLASALIAAGGLALPSPSKAFG-RKTTMTGDYKVDAAQVLTDMRAACDLGRGAPGMAETVTKTRTEMNDFVALYRRNDNVSGSTSFSTLYTAINTLSGHYASYGSSYPVPEKRKKRLSQQFSEIDRALSRGR 178          
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A1X6NML9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NML9_PORUM)

HSP 1 Score: 160 bits (405), Expect = 2.900e-46
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 0
Query:   70 SMTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            ++TGDY  DA  +L +++AA  L RG PGMA+ V KTR +MNDFVALYRRN KV+GS SFSTLYTAINTLSGHYASYG+ YPVPEKRKKRL+QQFSEIDRA++RGR
Sbjct:  133 TVTGDYVPDAKLMLNNLKAATALARGTPGMADTVNKTRKQMNDFVALYRRNGKVSGSVSFSTLYTAINTLSGHYASYGAAYPVPEKRKKRLNQQFSEIDRAIARGR 238          
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A7S0E6P6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E6P6_9EUKA)

HSP 1 Score: 151 bits (381), Expect = 1.470e-43
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = 0
Query:   71 MTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            M  DY ADA Q+L +MR A +L RGAPGM E V KTR EMNDFVA YRR  KVAG  SFSTLYTAINTLSGHYASYG+ YPVP KRK+RL+QQ+ EIDRAL+RG+
Sbjct:   62 MKKDYPADAKQMLDNMRTATELTRGAPGMEETVKKTRSEMNDFVAFYRRQPKVAGMPSFSTLYTAINTLSGHYASYGNKYPVPTKRKERLTQQYKEIDRALARGK 166          
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A7S1TEA1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TEA1_9RHOD)

HSP 1 Score: 151 bits (381), Expect = 2.930e-43
Identity = 84/140 (60.00%), Postives = 98/140 (70.00%), Query Frame = 0
Query:   37 TPLSRRAFLASTLLTTT-ALTLPNAAHAFGGRKTSMTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            T LSRR  L S L      + LP    A     T ++GDYKAD   VL  M+    L RGAPGMAE VG  R +MN++VA YRRN KV+GS SF+TLYTAINTLSGH+ASYG  YPVPEKR+KRL QQF+EI+RAL+RGR
Sbjct:   52 TGLSRRDLLRSALAAVLMGIALPGPVRA--ATATEISGDYKADTEAVLEKMKEIVGLKRGAPGMAETVGAARSQMNEYVAFYRRNGKVSGSLSFNTLYTAINTLSGHFASYGPSYPVPEKRRKRLEQQFAEIERALARGR 189          
BLAST of Gchil2143.t1 vs. uniprot
Match: M1V8D6_CYAM1 (Photosystem II protein Psb27 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V8D6_CYAM1)

HSP 1 Score: 148 bits (373), Expect = 5.830e-42
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 0
Query:   73 GDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            GDY  DA QV+  MR    L RG PGM EKV  TR +MNDFVALYRRN  VAG+ SFSTLYTAINTL+GH+ASYGS YPVPEKRKKRL QQ ++++RALSRGR
Sbjct:   94 GDYHEDATQVVQSMRTVTRLERGTPGMKEKVDATRKQMNDFVALYRRNPNVAGAVSFSTLYTAINTLAGHFASYGSTYPVPEKRKKRLEQQLNDVERALSRGR 196          
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A7J7IJC1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJC1_9RHOD)

HSP 1 Score: 145 bits (366), Expect = 5.580e-41
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 0
Query:   71 MTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            + GDY  DA +V+  MR    + RG PGM EKV  TR +MNDFVALYRRN  +AG+ SFSTLYTAINTL+GH+ASYGS YPVPEKR+KRL QQ ++++RALSRGR
Sbjct:   86 LQGDYHEDATRVMESMRTVAKMERGTPGMKEKVDATRKQMNDFVALYRRNPNIAGAVSFSTLYTAINTLAGHFASYGSMYPVPEKRRKRLEQQLNDVERALSRGR 190          
BLAST of Gchil2143.t1 vs. uniprot
Match: L1JUL8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JUL8_GUITC)

HSP 1 Score: 144 bits (362), Expect = 3.270e-40
Identity = 69/118 (58.47%), Postives = 90/118 (76.27%), Query Frame = 0
Query:   58 PNAAHAFGGRKTSMTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            P  A A  G K  ++GDYK D +++L  M+AA ++ +G P M   V  TRDEMN FVA YRRN+KVAG+ SFSTLYTAI+TLSGH+ +YG  YPVPEKRKKRLSQQ++E+++ ++RGR
Sbjct:   86 PAPAKAASGEKYKLSGDYKTDVSELLNKMKAATEMKKGDPAMKALVEDTRDEMNKFVAYYRRNNKVAGAASFSTLYTAISTLSGHFQNYGPEYPVPEKRKKRLSQQYAEVEKQIARGR 203          
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A7S0DX95_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DX95_9CRYP)

HSP 1 Score: 140 bits (353), Expect = 9.860e-39
Identity = 76/154 (49.35%), Postives = 101/154 (65.58%), Query Frame = 0
Query:   37 TPLSRRAFLASTLLTTTALTLPNAAHAFG---------------GRKTSMTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            T LSRR  LAS+      L++P    A G               G K  ++GDYK D   +L  M+AA ++ +G PGM   V  TR+EMN FVA YRRN+KVAG+ SFSTLYTAI+TLSGH+ +YG  YPVPEKR+KRL+QQ++E+++ ++RGR
Sbjct:   60 TVLSRRDVLASSAAVLAGLSMPAIVRAEGEAAVEAAPAPAKAATGEKYKLSGDYKTDVGDLLEKMKAATEMKKGDPGMKTVVEDTREEMNKFVAYYRRNNKVAGAASFSTLYTAISTLSGHFQNYGPEYPVPEKRRKRLAQQYAEVEKQIARGR 213          
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A5J4YTL4_PORPP (Photosystem II lipoprotein Psb27 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTL4_PORPP)

HSP 1 Score: 139 bits (349), Expect = 1.150e-38
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 0
Query:   71 MTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            ++G YK DA  ++ +M+   +  RG PGMA+ V   R +MNDFVALYRRN KV+GS+SFSTLYT+INTLSGHY SYG+GYPVPEKR+KRL  Q+ E+++AL +GR
Sbjct:   66 LSGVYKTDAESLVSNMKTVTEYARGTPGMADTVTGVRKQMNDFVALYRRNGKVSGSSSFSTLYTSINTLSGHYQSYGNGYPVPEKRRKRLLAQYKEVEKALDKGR 170          
BLAST of Gchil2143.t1 vs. uniprot
Match: A0A7S3W3I1_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3W3I1_9SPIT)

HSP 1 Score: 137 bits (346), Expect = 5.350e-38
Identity = 77/136 (56.62%), Postives = 94/136 (69.12%), Query Frame = 0
Query:   41 RRAFLASTLLTTTALTLPNAAHAFGGRKT-SMTGDYKADAAQVLGDMRAACDLGRGAPGMAEKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGYPVPEKRKKRLSQQFSEIDRALSRGR 175
            RRAFLA       A  + +AA AF    T  +  DY  DA  +L +M+ A +L RG P M + V  TR EMNDFVA YRR  K++G  SFSTLYTAINTLSGHYASYG+ YPVPEKR+ RL+QQ+ EI+RAL+RG+
Sbjct:   56 RRAFLAGA-----AAAVVSAAPAFADDDTYKLKKDYVVDAKNMLNNMKTATELQRGNPDMEKIVKATRSEMNDFVAFYRRQPKISGMPSFSTLYTAINTLSGHYASYGNKYPVPEKRRTRLAQQYKEIERALARGK 186          
The following BLAST results are available for this feature:
BLAST of Gchil2143.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISA5_9FLOR3.900e-7576.44Photosystem II lipoprotein Psb27 n=1 Tax=Gracilari... [more]
A0A1X6NML9_PORUM2.900e-4673.58Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0E6P6_9EUKA1.470e-4372.38Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S1TEA1_9RHOD2.930e-4360.00Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M1V8D6_CYAM15.830e-4270.87Photosystem II protein Psb27 n=1 Tax=Cyanidioschyz... [more]
A0A7J7IJC1_9RHOD5.580e-4165.71Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
L1JUL8_GUITC3.270e-4058.47Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0DX95_9CRYP9.860e-3949.35Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A5J4YTL4_PORPP1.150e-3860.95Photosystem II lipoprotein Psb27 n=1 Tax=Porphyrid... [more]
A0A7S3W3I1_9SPIT5.350e-3856.62Hypothetical protein (Fragment) n=2 Tax=Choreotric... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 65..175
e-value: 3.4E-34
score: 119.5
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 41..171
e-value: 7.7E-25
score: 87.8
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 3..175
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 43..171
score: 22.336266
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 3..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..61
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
IPR006311Twin-arginine translocation pathway, signal sequencePROSITEPS51318TATcoord: 1..63
score: 8.265724

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:17463..17990 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2143.t1Gchil2143.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000228_pilon 17463..17990 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2143.t1 ID=Gchil2143.t1|Name=Gchil2143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=176bp
MSSSSAFASSTFLASPPTPHVTSTVSSKPLVVMSTTTPLSRRAFLASTLL
TTTALTLPNAAHAFGGRKTSMTGDYKADAAQVLGDMRAACDLGRGAPGMA
EKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGY
PVPEKRKKRLSQQFSEIDRALSRGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038450PSII_Pbs27_sf
IPR025585PSII_Pbs27
IPR006311TAT_signal