Gchil2143.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2143.t1
Unique NameGchil2143.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:17463..17990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK176CT
PFAMsPSII_Pbs27
Max annot lvl2759|Eukaryota
KEGG koko:K08902
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0009628,GO:0009642,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055035,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0071704,GO:0104004,GO:1901564
Evalue7.16e-43
EggNOG OGs2CXSW@1|root,2RZI3@2759|Eukaryota
DescriptionPhotosystem II Pbs27
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2143Gchil2143Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 17463..17990 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2143.t1.stop1Gchil2143.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 17463..17465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2143.t1.CDS1Gchil2143.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 17463..17990 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2143.t1.exon1Gchil2143.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 17463..17990 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2143.t1.start1Gchil2143.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 17988..17990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2143.t1Gchil2143.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 17463..17990 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2143.t1 ID=Gchil2143.t1|Name=Gchil2143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=176bp
MSSSSAFASSTFLASPPTPHVTSTVSSKPLVVMSTTTPLSRRAFLASTLL
TTTALTLPNAAHAFGGRKTSMTGDYKADAAQVLGDMRAACDLGRGAPGMA
EKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGY
PVPEKRKKRLSQQFSEIDRALSRGR*
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spliced messenger RNA

>Gchil2143.t1 ID=Gchil2143.t1|Name=Gchil2143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000228_pilon:17463..17990- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCAAGCTCAGCGTTCGCATCGTCAACCTTCCTTGCGTCACCCCC
GACGCCGCATGTCACATCAACTGTATCTTCTAAGCCGCTTGTAGTTATGT
CTACAACAACTCCTCTTTCCCGTCGTGCCTTCCTAGCATCCACGCTGCTC
ACAACAACCGCCCTAACTCTTCCAAACGCCGCGCATGCGTTCGGTGGTCG
CAAGACATCAATGACAGGCGACTACAAGGCAGACGCCGCACAAGTGCTGG
GCGATATGCGCGCAGCCTGTGATCTGGGTCGCGGAGCACCTGGAATGGCT
GAGAAAGTGGGAAAGACCCGAGATGAAATGAATGATTTCGTGGCTCTGTA
CAGAAGAAACGATAAAGTGGCTGGCAGCACAAGTTTTTCCACACTCTACA
CCGCCATTAATACGCTGAGCGGTCATTATGCTTCTTATGGGAGTGGCTAT
CCAGTGCCGGAAAAGAGGAAGAAGAGGCTTTCCCAACAATTTTCCGAGAT
TGACCGCGCTCTGTCTCGCGGAAGATAA
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protein sequence of Gchil2143.t1

>Gchil2143.t1 ID=Gchil2143.t1|Name=Gchil2143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=176bp
MSSSSAFASSTFLASPPTPHVTSTVSSKPLVVMSTTTPLSRRAFLASTLL
TTTALTLPNAAHAFGGRKTSMTGDYKADAAQVLGDMRAACDLGRGAPGMA
EKVGKTRDEMNDFVALYRRNDKVAGSTSFSTLYTAINTLSGHYASYGSGY
PVPEKRKKRLSQQFSEIDRALSRGR*
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mRNA from alignment at tig00000228_pilon:17463..17990-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2143.t1 ID=Gchil2143.t1|Name=Gchil2143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000228_pilon:17463..17990- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCAAGCTCAGCGTTCGCATCGTCAACCTTCCTTGCGTCACCCCC
GACGCCGCATGTCACATCAACTGTATCTTCTAAGCCGCTTGTAGTTATGT
CTACAACAACTCCTCTTTCCCGTCGTGCCTTCCTAGCATCCACGCTGCTC
ACAACAACCGCCCTAACTCTTCCAAACGCCGCGCATGCGTTCGGTGGTCG
CAAGACATCAATGACAGGCGACTACAAGGCAGACGCCGCACAAGTGCTGG
GCGATATGCGCGCAGCCTGTGATCTGGGTCGCGGAGCACCTGGAATGGCT
GAGAAAGTGGGAAAGACCCGAGATGAAATGAATGATTTCGTGGCTCTGTA
CAGAAGAAACGATAAAGTGGCTGGCAGCACAAGTTTTTCCACACTCTACA
CCGCCATTAATACGCTGAGCGGTCATTATGCTTCTTATGGGAGTGGCTAT
CCAGTGCCGGAAAAGAGGAAGAAGAGGCTTTCCCAACAATTTTCCGAGAT
TGACCGCGCTCTGTCTCGCGGAAGATAA
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Coding sequence (CDS) from alignment at tig00000228_pilon:17463..17990-

>Gchil2143.t1 ID=Gchil2143.t1|Name=Gchil2143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000228_pilon:17463..17990- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCAAGCTCAGCGTTCGCATCGTCAACCTTCCTTGCGTCACCCCC
GACGCCGCATGTCACATCAACTGTATCTTCTAAGCCGCTTGTAGTTATGT
CTACAACAACTCCTCTTTCCCGTCGTGCCTTCCTAGCATCCACGCTGCTC
ACAACAACCGCCCTAACTCTTCCAAACGCCGCGCATGCGTTCGGTGGTCG
CAAGACATCAATGACAGGCGACTACAAGGCAGACGCCGCACAAGTGCTGG
GCGATATGCGCGCAGCCTGTGATCTGGGTCGCGGAGCACCTGGAATGGCT
GAGAAAGTGGGAAAGACCCGAGATGAAATGAATGATTTCGTGGCTCTGTA
CAGAAGAAACGATAAAGTGGCTGGCAGCACAAGTTTTTCCACACTCTACA
CCGCCATTAATACGCTGAGCGGTCATTATGCTTCTTATGGGAGTGGCTAT
CCAGTGCCGGAAAAGAGGAAGAAGAGGCTTTCCCAACAATTTTCCGAGAT
TGACCGCGCTCTGTCTCGCGGAAGATAA
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