Gchil2141.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2141.t1
Unique NameGchil2141.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length392
Homology
BLAST of Gchil2141.t1 vs. uniprot
Match: A0A2V3IRA9_9FLOR (WD repeat-containing protein 44 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRA9_9FLOR)

HSP 1 Score: 376 bits (966), Expect = 1.870e-125
Identity = 203/398 (51.01%), Postives = 260/398 (65.33%), Query Frame = 0
Query:    1 MSARVALPSRRRRASPSVLTAATRVQRFKPSDHKPVALCWSPLGTFLAVAVQQGPILLFYVLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDDATHALPASSA--PQDLQRSVADVNRIKAGTDDSLCNAPSLRVQRTLNLKPSRRKRRS-GCKVIALRTNSHNGNMLALCADGRVHVVDSEGRSIARYRTPFNKEGVGIGGSLSCNARWMIADALFDVVRLVDVHAVETGT---------GLKVDRIDSMAGCDISCAAFATNGAMKHGGFEHGDSAIVMAVGAEDSYLTIVQSAY 386
            M+ARV+ P+ RRR S   L     +Q F+PS  KPVAL WS  G+FLAVAVQ GPILL YVLP KQ ALR  PIRTY GH+ADVLHMCFS +NFLLSASMD CVRLWHTDTALCLRRFVHPDMVT V+FHP NEN              RPADHAC++QT++ +VIT  QFC +GKRAY+  YDG + +L+V +AT   P  +A   +DLQRS   +  ++   DD L  AP L+V R++NL+  RRKRR  G KV AL  ++     +ALC+DGR+HVV+ +G    R++    KEGV +G S S + RW++ D +   VR++DVH V + +         G+ V+R+  M    ++CAA AT G ++HGG E  +  +VMAVG +D  L IV   Y
Sbjct:    1 MAARVS-PTPRRRPSTPTLCTPNVIQHFRPSSEKPVALAWSLEGSFLAVAVQNGPILLLYVLPTKQGALRVNPIRTYRGHTADVLHMCFSRTNFLLSASMDHCVRLWHTDTALCLRRFVHPDMVTTVAFHPRNENYVISGGCDGTARIWRPADHACVAQTDVNAVITAAQFCGEGKRAYLGTYDGRLLVLDVREATQT-PGENANNQEDLQRSFGALVPVRKA-DDKLHVAPLLKVGRSVNLRVHRRKRRKPGAKVTALALDAGCKRTMALCSDGRLHVVEGDGEPYGRFKAGARKEGVPLGSSTSVDGRWLLVDGVGSAVRIMDVHRVGSSSKSGRHGKNGGITVERLQVMEQAQVTCAALATKGVLEHGGVEDVERTLVMAVGGDDGSLRIVSCLY 395          
BLAST of Gchil2141.t1 vs. uniprot
Match: A0A7R9XXP7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XXP7_MICPS)

HSP 1 Score: 97.8 bits (242), Expect = 2.130e-18
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 0
Query:   70 RTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVD 193
            ++ P+R YTGH+ DVL +C+S++N+LLS+SMD+ VRLW+     CLR F H D VTA+ FHP+N+                  DH      ++G ++T   F   G  A    Y G     ++D
Sbjct:  259 KSKPLREYTGHTGDVLDLCWSHTNWLLSSSMDKTVRLWYMTMDECLRIFSHQDFVTAIDFHPINDKYFLSGSLDGKLRFWNIPDHRVADWVDIGEMVTAATFTSDGSCAVAGSYKGKCHFYSMD 382          
BLAST of Gchil2141.t1 vs. uniprot
Match: C1MUN4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUN4_MICPC)

HSP 1 Score: 97.8 bits (242), Expect = 2.490e-18
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 0
Query:   70 RTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVD 193
            ++ P+R YTGH+ DVL +C+S++N+LLS+SMD+ VRLW+     CLR F H D VTA+ FHP+N+                  DH      ++G ++T   F   G  A    Y G     ++D
Sbjct:  434 KSKPLREYTGHTGDVLDLCWSHTNWLLSSSMDKTVRLWYMTMDECLRIFSHQDFVTAIDFHPINDKYFLSGSLDGKLRFWNIPDHRVADWVDIGEMVTAATFTSDGSCAVAGSYKGKCHFYSMD 557          
BLAST of Gchil2141.t1 vs. uniprot
Match: K7U5C2_MAIZE (Transducin/WD40 repeat-like superfamily protein n=5 Tax=Zea mays TaxID=4577 RepID=K7U5C2_MAIZE)

HSP 1 Score: 95.9 bits (237), Expect = 1.050e-17
Identity = 81/251 (32.27%), Postives = 122/251 (48.61%), Query Frame = 0
Query:   61 VLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDDATHALPASSAPQDLQRSVADVNRIKAGTDDSLCNAPSLRVQRTLNLKPSRRKRRSGCKVIALRTNSHNGNMLALCADGRVHVVDSEGRSIARYRTPFNKEGVGIGGSLSCNARWMIA 311
            +LP    AL   PIRT+ GHS DVL +C+S S +LLS+SMD+ V+LWH  +  CL+ F H D VT + F+PV++ XXXXXXXXXXXXXX   +   +   +L  +IT   +   G+ A +  + G+  + +  D             LQ+   D+   K                     K S +K+ +G + +   T+     +L   AD R+ VVD  G ++      F      I  SL+ N  ++I+
Sbjct:  411 MLPEHVFALSEKPIRTFMGHSEDVLDLCWSKSQYLLSSSMDKTVKLWHISSTSCLKTFSHSDYVTCIQFNPVDDRXXXXXXXXXXXXXXXXQNREIVDWKDLHEMITAACYTPDGQSALIGSHKGSCHIYDTSDNML----------LQKKQIDLQNKK---------------------KKSSQKKITGFQFLPGSTSK----VLITSADSRIRVVD--GLNLVHKYKGFRNSNSQISASLAANGSYVIS 624          
BLAST of Gchil2141.t1 vs. uniprot
Match: A0A2G9H384_9LAMI (WD40 repeat-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H384_9LAMI)

HSP 1 Score: 95.1 bits (235), Expect = 2.070e-17
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = 0
Query:   62 LPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDD 194
            +P    AL   PI T+ GH  DVL + +S S FLLS+SMD+ VR+W  +T  CL+ F H D VT + F+PV+EN  XXXXXXXXXXXX       +  T++  ++T   +   G+ A + C +G+  L  +DD
Sbjct:  501 VPETVLALSEKPICTFKGHQEDVLDLAWSKSQFLLSSSMDKTVRMWDLETKSCLKMFAHNDYVTCIQFNPVDENYFXXXXXXXXXXXXXXXXXXXVDWTDVHEMVTAASYTPDGQGAIIGCQEGSCRLYTIDD 633          
BLAST of Gchil2141.t1 vs. uniprot
Match: I0YL89_COCSC (WD40 repeat-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YL89_COCSC)

HSP 1 Score: 94.4 bits (233), Expect = 2.440e-17
Identity = 53/155 (34.19%), Postives = 76/155 (49.03%), Query Frame = 0
Query:   40 WSPLGTFLAVAVQQGPILLFYVLPNK---------QCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDG 185
            +S  G +LA A Q   + ++ V  N+            LR  P RT+ GH+ADVL + +S S FLL+ASMD+ VRLWH     CLR F H D VT++ FHPV++                  +   +   ++  ++T T F   G+RA V    G
Sbjct:  183 FSKNGKYLASAGQDAAVRVWEVCLNRGETENAEEGPRVLRVAPYRTFAGHTADVLDLAWSKSQFLLTASMDKTVRLWHISMDDCLRVFKHTDFVTSLDFHPVDDKYFISGSIDGKVRVWNIPEQRVVDWADVHEMVTATAFAPDGRRAVVGTMKG 337          
BLAST of Gchil2141.t1 vs. uniprot
Match: A0A1D6E4V2_MAIZE (Transducin/WD40 repeat-like superfamily protein n=11 Tax=Panicoideae TaxID=147369 RepID=A0A1D6E4V2_MAIZE)

HSP 1 Score: 94.7 bits (234), Expect = 2.530e-17
Identity = 79/251 (31.47%), Postives = 123/251 (49.00%), Query Frame = 0
Query:   61 VLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDDATHALPASSAPQDLQRSVADVNRIKAGTDDSLCNAPSLRVQRTLNLKPSRRKRRSGCKVIALRTNSHNGNMLALCADGRVHVVDSEGRSIARYRTPFNKEGVGIGGSLSCNARWMIA 311
            ++P    AL   PIRT+ GHS DVL +C+S S +LLS+SMD+ V+LWH  +A CL+ F H D VT + F+PV++ XXXXXXXXXXXXXX   +   +   +L  ++T   +   G+ A +  + G+  + +  D           + LQ+   D+   K                     K S +K+ +G + +   T+     +L   AD R+ V D  G ++      F      I   L+ N R++I+
Sbjct:  409 MVPEHVFALSEKPIRTFVGHSEDVLDLCWSKSQYLLSSSMDKTVKLWHISSASCLKTFSHSDYVTCIQFNPVDDRXXXXXXXXXXXXXXXXQNREIVDWKDLHEMVTAACYTPDGQSALIGSHKGSCHIYDTSDN----------KLLQKKQIDLQNKK---------------------KKSSQKKITGFQFLPGSTS----RVLITSADSRIRVFD--GLNLVHKYKGFRNTNSQISACLAANGRYVIS 622          
BLAST of Gchil2141.t1 vs. uniprot
Match: A0A7J6WL22_THATH (Wd repeat-containing protein n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A7J6WL22_THATH)

HSP 1 Score: 94.7 bits (234), Expect = 2.710e-17
Identity = 82/250 (32.80%), Postives = 123/250 (49.20%), Query Frame = 0
Query:   61 VLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDDATHALPASSAPQDLQRSVADVNRIKAGTDDSLCNAPSLRVQRTLNLKPSRRKRRSGCKVIALRTNSHNGNMLALCADGRVHVVDSEGRSIARYRTPFNKEGVGIGGSLSCNARWMI 310
            V+P+   AL  TPI ++ GH  DVL + +S S +LLS+SMD+ VRLWH D+  CL+ F H D VT + F+P+++ XXXXXXXXXXXXXX   D   +  ++L  ++T   +   G+ A V  Y G+  L N          +S  +  Q+S  D+   K                     K S  K+ +G + +  R +     +L   AD RV VVD  G  +      F      +  SL+ N ++++
Sbjct:  520 VMPDSVFALSETPICSFRGHLDDVLDLSWSKSQYLLSSSMDKTVRLWHMDSHACLKIFSHSDYVTCIQFNPIDDRXXXXXXXXXXXXXXXIPDRQVVDWSDLHEMVTAASYTPDGQGALVGSYKGSCRLFN----------TSENKLQQKSQIDLQNKK---------------------KKSHLKKITGFQFVPGRFSE----VLITSADSRVRVVD--GTDLVHKFKGFRNTNSQMSASLTANGKYVV 732          
BLAST of Gchil2141.t1 vs. uniprot
Match: A0A835H2P9_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835H2P9_9MAGN)

HSP 1 Score: 94.0 bits (232), Expect = 4.810e-17
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 0
Query:   61 VLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDD 194
            V+P    AL   PI ++ GH  DVL + +S S +LLS+SMD+ VRLWH   + CL+ F H D VT + F+PV++NXXXXXXXXXXXXXX  +DH  +   +L  ++T   +   G+ A+V  Y G+  L N  +
Sbjct:  497 VVPESIFALSEKPICSFRGHLDDVLDLSWSKSQYLLSSSMDKTVRLWHMGNSSCLKVFSHSDYVTCIQFNPVDDNXXXXXXXXXXXXXXXXSDHQVVDWNDLHEMVTAACYTPDGQGAFVGSYKGSCCLYNTSE 630          
BLAST of Gchil2141.t1 vs. uniprot
Match: A0A5J9TUR8_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TUR8_9POAL)

HSP 1 Score: 93.6 bits (231), Expect = 4.890e-17
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 0
Query:   61 VLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASMDRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENXXXXXXXXXXXXXXRPADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDD 194
            +LP    AL   PIRT+ GHS DVL +C+S S +LLSASMD+ V+LWH  +  CL+ F H D VT + F+PV++ XXXXXXXXXXXXXX   +   +   +L  +IT   +   G+ A +  + G+  + +  D
Sbjct:  209 MLPEHVFALSEKPIRTFEGHSEDVLDLCWSKSQYLLSASMDKTVKLWHISSISCLKTFSHSDYVTCIQFNPVDDRXXXXXXXXXXXXXXXXQNREIVDWNDLHEMITAACYAPDGQSALIGSHKGSCHVYDTSD 342          
The following BLAST results are available for this feature:
BLAST of Gchil2141.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRA9_9FLOR1.870e-12551.01WD repeat-containing protein 44 n=1 Tax=Gracilario... [more]
A0A7R9XXP7_MICPS2.130e-1836.29Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1MUN4_MICPC2.490e-1836.29Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
K7U5C2_MAIZE1.050e-1732.27Transducin/WD40 repeat-like superfamily protein n=... [more]
A0A2G9H384_9LAMI2.070e-1742.86WD40 repeat-containing protein n=1 Tax=Handroanthu... [more]
I0YL89_COCSC2.440e-1734.19WD40 repeat-like protein n=1 Tax=Coccomyxa subelli... [more]
A0A1D6E4V2_MAIZE2.530e-1731.47Transducin/WD40 repeat-like superfamily protein n=... [more]
A0A7J6WL22_THATH2.710e-1732.80Wd repeat-containing protein n=3 Tax=Thalictroidea... [more]
A0A835H2P9_9MAGN4.810e-1744.78Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A5J9TUR8_9POAL4.890e-1744.03Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 239..278
e-value: 240.0
score: 1.9
coord: 70..108
e-value: 2.1E-8
score: 44.0
coord: 111..150
e-value: 1.5E-6
score: 37.8
coord: 21..60
e-value: 160.0
score: 3.1
coord: 153..191
e-value: 110.0
score: 4.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 73..107
e-value: 4.8E-6
score: 27.2
coord: 114..149
e-value: 0.041
score: 14.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 77..117
score: 11.143396
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 117..149
score: 9.672996
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 22..388
e-value: 1.2E-34
score: 121.7
NoneNo IPR availablePANTHERPTHR14221:SF0WD REPEAT-CONTAINING PROTEIN 44coord: 63..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..22
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..391
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..62
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..42
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 77..111
score: 8.992876
IPR040324WD repeat-containing protein WDR44/Dgr2PANTHERPTHR14221WD REPEAT DOMAIN 44coord: 63..303
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 33..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:14703..15878 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2141.t1Gchil2141.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000228_pilon 14703..15878 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2141.t1 ID=Gchil2141.t1|Name=Gchil2141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=392bp
MSARVALPSRRRRASPSVLTAATRVQRFKPSDHKPVALCWSPLGTFLAVA
VQQGPILLFYVLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASM
DRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENYVISGGCDGIARIWR
PADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDDATHALP
ASSAPQDLQRSVADVNRIKAGTDDSLCNAPSLRVQRTLNLKPSRRKRRSG
CKVIALRTNSHNGNMLALCADGRVHVVDSEGRSIARYRTPFNKEGVGIGG
SLSCNARWMIADALFDVVRLVDVHAVETGTGLKVDRIDSMAGCDISCAAF
ATNGAMKHGGFEHGDSAIVMAVGAEDSYLTIVQSAYSSSTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR040324WDR44/Dgr2
IPR036322WD40_repeat_dom_sf