Gchil2141.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2141.t1
Unique Name	Gchil2141.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:14703..15878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003059526.1
PFAMs	WD40
Max annot lvl	33090\|Viridiplantae
KEGG ko	ko:K20241
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0010008,GO:0012505,GO:0016020,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0097708,GO:0098588,GO:0098791,GO:0098805
Evalue	5.68e-19
EggNOG OGs	KOG0283@1\|root,KOG0283@2759\|Eukaryota,37IP9@33090\|Viridiplantae
Description	WD repeat-containing protein
COG category	V
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2141	Gchil2141	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 14703..15878 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2141.t1.start1	Gchil2141.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 14703..14705 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2141.t1.CDS1	Gchil2141.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 14703..15878 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2141.t1.exon1	Gchil2141.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 14703..15878 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2141.t1.stop1	Gchil2141.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 15876..15878 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2141.t1	Gchil2141.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 14703..15878 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:14703..15878+
coding sequence from alignment at tig00000228_pilon:14703..15878+

mRNA sequence

>Gchil2141.t1 ID=Gchil2141.t1|Name=Gchil2141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=392bp
MSARVALPSRRRRASPSVLTAATRVQRFKPSDHKPVALCWSPLGTFLAVA
VQQGPILLFYVLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASM
DRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENYVISGGCDGIARIWR
PADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDDATHALP
ASSAPQDLQRSVADVNRIKAGTDDSLCNAPSLRVQRTLNLKPSRRKRRSG
CKVIALRTNSHNGNMLALCADGRVHVVDSEGRSIARYRTPFNKEGVGIGG
SLSCNARWMIADALFDVVRLVDVHAVETGTGLKVDRIDSMAGCDISCAAF
ATNGAMKHGGFEHGDSAIVMAVGAEDSYLTIVQSAYSSSTP*

spliced messenger RNA

>Gchil2141.t1 ID=Gchil2141.t1|Name=Gchil2141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000228_pilon:14703..15878+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCACGAGTGGCGCTTCCCTCGCGAAGAAGAAGAGCGTCACCGTC
AGTGCTCACCGCCGCAACGCGCGTTCAACGCTTTAAGCCGTCTGACCACA
AACCTGTTGCCTTATGCTGGTCCCCGCTGGGAACCTTTCTTGCCGTTGCC
GTGCAACAAGGCCCAATTCTCTTATTCTACGTGTTACCTAACAAGCAATG
TGCTCTAAGAACCACCCCTATCAGGACCTATACAGGGCATAGTGCGGATG
TTTTGCACATGTGTTTCTCCAACTCCAATTTTCTCTTGTCGGCTAGCATG
GACAGGTGTGTAAGGCTTTGGCACACCGACACTGCGCTGTGTCTCAGAAG
ATTCGTCCACCCGGACATGGTCACTGCTGTGTCCTTTCACCCCGTAAATG
AGAATTACGTCATCAGCGGAGGGTGCGATGGAATTGCCAGAATCTGGCGA
CCAGCCGACCATGCTTGTATCTCGCAAACCAACTTGGGTTCCGTCATAAC
CGTCACCCAGTTTTGTGAACAGGGCAAGCGCGCCTATGTCGCATGCTACG
ATGGCACCGTTTCACTTCTCAACGTCGATGATGCAACGCACGCACTCCCC
GCTTCCTCAGCGCCACAAGACCTGCAACGCAGCGTTGCCGACGTCAACCG
CATTAAAGCCGGTACCGACGATTCGTTGTGCAACGCCCCTTCGCTCAGAG
TGCAACGTACGCTGAATTTGAAACCAAGTCGGAGAAAGCGACGCTCCGGT
TGCAAAGTAATAGCGCTACGAACGAACAGTCACAACGGAAACATGCTTGC
TCTATGTGCGGATGGGCGCGTGCACGTTGTGGACAGCGAGGGAAGAAGCA
TCGCAAGATATCGCACCCCGTTCAACAAGGAAGGCGTTGGTATAGGAGGC
TCGTTGTCGTGCAACGCGCGCTGGATGATTGCAGATGCGCTCTTCGACGT
GGTGCGACTGGTCGACGTGCACGCCGTGGAGACGGGCACCGGCTTGAAGG
TGGACCGCATCGACTCCATGGCGGGATGCGACATCAGCTGCGCCGCCTTC
GCCACGAACGGCGCCATGAAGCACGGCGGCTTCGAGCATGGCGATAGTGC
CATCGTCATGGCGGTAGGCGCCGAAGATAGTTACCTTACCATCGTTCAGA
GCGCTTACTCCTCTTCCACTCCGTGA

protein sequence of Gchil2141.t1

>Gchil2141.t1 ID=Gchil2141.t1|Name=Gchil2141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=392bp
MSARVALPSRRRRASPSVLTAATRVQRFKPSDHKPVALCWSPLGTFLAVA
VQQGPILLFYVLPNKQCALRTTPIRTYTGHSADVLHMCFSNSNFLLSASM
DRCVRLWHTDTALCLRRFVHPDMVTAVSFHPVNENYVISGGCDGIARIWR
PADHACISQTNLGSVITVTQFCEQGKRAYVACYDGTVSLLNVDDATHALP
ASSAPQDLQRSVADVNRIKAGTDDSLCNAPSLRVQRTLNLKPSRRKRRSG
CKVIALRTNSHNGNMLALCADGRVHVVDSEGRSIARYRTPFNKEGVGIGG
SLSCNARWMIADALFDVVRLVDVHAVETGTGLKVDRIDSMAGCDISCAAF
ATNGAMKHGGFEHGDSAIVMAVGAEDSYLTIVQSAYSSSTP*

mRNA from alignment at tig00000228_pilon:14703..15878+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2141.t1 ID=Gchil2141.t1|Name=Gchil2141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000228_pilon:14703..15878+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCACGAGTGGCGCTTCCCTCGCGAAGAAGAAGAGCGTCACCGTC
AGTGCTCACCGCCGCAACGCGCGTTCAACGCTTTAAGCCGTCTGACCACA
AACCTGTTGCCTTATGCTGGTCCCCGCTGGGAACCTTTCTTGCCGTTGCC
GTGCAACAAGGCCCAATTCTCTTATTCTACGTGTTACCTAACAAGCAATG
TGCTCTAAGAACCACCCCTATCAGGACCTATACAGGGCATAGTGCGGATG
TTTTGCACATGTGTTTCTCCAACTCCAATTTTCTCTTGTCGGCTAGCATG
GACAGGTGTGTAAGGCTTTGGCACACCGACACTGCGCTGTGTCTCAGAAG
ATTCGTCCACCCGGACATGGTCACTGCTGTGTCCTTTCACCCCGTAAATG
AGAATTACGTCATCAGCGGAGGGTGCGATGGAATTGCCAGAATCTGGCGA
CCAGCCGACCATGCTTGTATCTCGCAAACCAACTTGGGTTCCGTCATAAC
CGTCACCCAGTTTTGTGAACAGGGCAAGCGCGCCTATGTCGCATGCTACG
ATGGCACCGTTTCACTTCTCAACGTCGATGATGCAACGCACGCACTCCCC
GCTTCCTCAGCGCCACAAGACCTGCAACGCAGCGTTGCCGACGTCAACCG
CATTAAAGCCGGTACCGACGATTCGTTGTGCAACGCCCCTTCGCTCAGAG
TGCAACGTACGCTGAATTTGAAACCAAGTCGGAGAAAGCGACGCTCCGGT
TGCAAAGTAATAGCGCTACGAACGAACAGTCACAACGGAAACATGCTTGC
TCTATGTGCGGATGGGCGCGTGCACGTTGTGGACAGCGAGGGAAGAAGCA
TCGCAAGATATCGCACCCCGTTCAACAAGGAAGGCGTTGGTATAGGAGGC
TCGTTGTCGTGCAACGCGCGCTGGATGATTGCAGATGCGCTCTTCGACGT
GGTGCGACTGGTCGACGTGCACGCCGTGGAGACGGGCACCGGCTTGAAGG
TGGACCGCATCGACTCCATGGCGGGATGCGACATCAGCTGCGCCGCCTTC
GCCACGAACGGCGCCATGAAGCACGGCGGCTTCGAGCATGGCGATAGTGC
CATCGTCATGGCGGTAGGCGCCGAAGATAGTTACCTTACCATCGTTCAGA
GCGCTTACTCCTCTTCCACTCCGTGA

Coding sequence (CDS) from alignment at tig00000228_pilon:14703..15878+

>Gchil2141.t1 ID=Gchil2141.t1|Name=Gchil2141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000228_pilon:14703..15878+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCACGAGTGGCGCTTCCCTCGCGAAGAAGAAGAGCGTCACCGTC
AGTGCTCACCGCCGCAACGCGCGTTCAACGCTTTAAGCCGTCTGACCACA
AACCTGTTGCCTTATGCTGGTCCCCGCTGGGAACCTTTCTTGCCGTTGCC
GTGCAACAAGGCCCAATTCTCTTATTCTACGTGTTACCTAACAAGCAATG
TGCTCTAAGAACCACCCCTATCAGGACCTATACAGGGCATAGTGCGGATG
TTTTGCACATGTGTTTCTCCAACTCCAATTTTCTCTTGTCGGCTAGCATG
GACAGGTGTGTAAGGCTTTGGCACACCGACACTGCGCTGTGTCTCAGAAG
ATTCGTCCACCCGGACATGGTCACTGCTGTGTCCTTTCACCCCGTAAATG
AGAATTACGTCATCAGCGGAGGGTGCGATGGAATTGCCAGAATCTGGCGA
CCAGCCGACCATGCTTGTATCTCGCAAACCAACTTGGGTTCCGTCATAAC
CGTCACCCAGTTTTGTGAACAGGGCAAGCGCGCCTATGTCGCATGCTACG
ATGGCACCGTTTCACTTCTCAACGTCGATGATGCAACGCACGCACTCCCC
GCTTCCTCAGCGCCACAAGACCTGCAACGCAGCGTTGCCGACGTCAACCG
CATTAAAGCCGGTACCGACGATTCGTTGTGCAACGCCCCTTCGCTCAGAG
TGCAACGTACGCTGAATTTGAAACCAAGTCGGAGAAAGCGACGCTCCGGT
TGCAAAGTAATAGCGCTACGAACGAACAGTCACAACGGAAACATGCTTGC
TCTATGTGCGGATGGGCGCGTGCACGTTGTGGACAGCGAGGGAAGAAGCA
TCGCAAGATATCGCACCCCGTTCAACAAGGAAGGCGTTGGTATAGGAGGC
TCGTTGTCGTGCAACGCGCGCTGGATGATTGCAGATGCGCTCTTCGACGT
GGTGCGACTGGTCGACGTGCACGCCGTGGAGACGGGCACCGGCTTGAAGG
TGGACCGCATCGACTCCATGGCGGGATGCGACATCAGCTGCGCCGCCTTC
GCCACGAACGGCGCCATGAAGCACGGCGGCTTCGAGCATGGCGATAGTGC
CATCGTCATGGCGGTAGGCGCCGAAGATAGTTACCTTACCATCGTTCAGA
GCGCTTACTCCTCTTCCACTCCGTGA