Gchil1989.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1989.t1
Unique NameGchil1989.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length577
Homology
BLAST of Gchil1989.t1 vs. uniprot
Match: A0A2V3IFU4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFU4_9FLOR)

HSP 1 Score: 602 bits (1552), Expect = 4.600e-209
Identity = 310/573 (54.10%), Postives = 404/573 (70.51%), Query Frame = 0
Query:    7 RRWAFVFVLALLFGLIRGSEDAE-TPISLKTIAQVKKAIEHLSLKDKNKMTNKNVSVWNLHFLKHIADMKELSEDTIQNELSHSPDIDSDGNQAQTTQRTTNQTSKRADGDKTKGKGNSSIARVLREMIKAVGEASQKRSAQSFIRIGKAEIPREKVTAVGDVDDNGFEDYVVSNPASMNDTGTIRLYLMTNDNKFLYTRDLVPGKYGFTGSPLTPGDRFGDNVEKIASDMPNFSFVTVTAPGDRSVAGDKGAFYILQLSDKGNVINSAKLSAKTVETVVTNPASKNSIQNTN--ELNRSILSKKIVEILSNKTSMLLVRKEGEIKGAYVITSPEDHKMLRQIEGKMTPRKRLASLRLDSPLVRAEISSSCFFNETHCACASKAPAEGSAQCTRVVGTEESSGRTLCLTRDCMASHSCMCEGTELCVRTERTLTSYVTDGAAPGGNMYCNPVQKTITENVLIPGAEVPVILSVNDLPPYNATHCRCANKQSVTGGATCLDVLRQISGINYVCSERACRIGAGEFVCDAFGASYCSRSFVEKIHYVKDGEKPDEPGAILCHREAYQAESVVKIM 576
            +R AF+  +A LFG++  +E  E   +  KT+A ++KA+E+LS K+KN +   N + WNLHFLK + D    ++     E   SP+           + TT++ ++    + T GK  S +               +  S + F+ IG+++IP  KV AVGDVD NG ED++V NPAS  + GTIRLYLM  DNKFLYTRDLVPGKYGF    L PGDRFG +V KI++D PNFSF+ VTAPGDR V G KGAFY+LQLSDKGNV+N+ KLSA T+E + +  +S   + +    EL  S LSK+IV+ILSNKTSMLLVRKEG+IKGAYVI+S +D  +L+ +E +MTPR +L ++RL SP VR  +SSSCFFN+THCAC SK+P  GS  CT+VVGT++S+GRTLC  RDC AS  C C+GT LC R ERT+TSY+T+G APGG MYC+P Q+TITENV+IPGA VPV++ +NDLPP+NATHCRC  KQ++ G +TCLD LR  S I  VCS R CRIG+ E VCDAFG SYC R+F +KIHYV +G++ +EPG + CHRE+YQ+E +VK++
Sbjct:    7 QRKAFIVFVASLFGVLHATESTERATLGSKTLAHMRKAVEYLSAKEKNDVKT-NSAPWNLHFLKVMVDKAGNADKVNATEHFQSPE-------PVIEESTTDELNQ----NMTTGKSQSPV---------------KPGSEEDFVMIGESKIPANKVAAVGDVDGNGVEDFIVRNPASNYNRGTIRLYLMAKDNKFLYTRDLVPGKYGFNSDSLKPGDRFGASVLKISNDSPNFSFIAVTAPGDRMVPGKKGAFYVLQLSDKGNVLNNVKLSASTIEKIASQQSSGREVDSVTIPELKESSLSKRIVDILSNKTSMLLVRKEGQIKGAYVISSNDDQMLLKHLEKQMTPRNKLETMRLLSPAVRPALSSSCFFNDTHCACGSKSPTVGSNDCTQVVGTDQSTGRTLCQKRDCQASFQCSCDGTSLCQRAERTMTSYITEGPAPGGMMYCSPQQRTITENVVIPGASVPVVVDINDLPPFNATHCRCTPKQAIVGSSTCLDFLRTESSIAIVCSVRECRIGSSEHVCDAFGDSYCERTFADKIHYVNNGDRLNEPGTVYCHRESYQSEVLVKVL 552          
BLAST of Gchil1989.t1 vs. uniprot
Match: R7Q231_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q231_CHOCR)

HSP 1 Score: 251 bits (640), Expect = 2.900e-73
Identity = 147/435 (33.79%), Postives = 234/435 (53.79%), Query Frame = 0
Query:  149 FIRIGKAEIPREKVTAVGDVDDNGFEDYVVSNPASMNDTGTIRLYLMTNDNKFLYTRDLVPGKYGFTGSPLTPGDRFGDNVEKIASDMP-NFSFVTVTAPGDRSVAGDKGAFYILQLSDKGNVINSAKLSAKTVETVVTNPASKNSIQNTNELNRSILSKKIVEILSNKTSML----LVRKEGEIKGAYVITSPEDHKMLRQIEGKMTPRKRLASLRLDSPLVRAEISSSCFFNETHCACASKAPAEGSAQCTRVVGTEESSGRTLCLTRDCMASHSCMCEGTELCVRTERTLTSYVTDGAAPGGNMYCNPVQKTITENVLI-----PGAEVPVILSVN-DLPPYNATHCRCANKQSVTGGATCLDVLRQISGINYVCSERACRIGAGEFVCDAFGASYCSRSFVEKIHYVKDGEKPDEPGAILCHREAYQAESV 572
            F+     ++P E +T +GD+D+NG  DY+VSNP++ N TG+++L+L+TN++  L+TR ++P         L P D F  +V  ++ +   + S + V APGD   A   GA Y+L L+  GN+++S KLSA  +++   + A +N +  T  ++        V+++    S L     ++  G+++   V    E    L +   + + R   A   +    VR   S  C F++++CAC   A   GS  C  VVGTE  +GR LC  RDC A++ C C+G E C R E T T++V++G A GG MYC  V  T+ +N+++     P  +V  ++    D  PY AT+CRC+ + +V   +TCLD LR+      +CS RAC+    E+VCD FG +YC R  V    YV +G+  ++ G  +C  E+   E V
Sbjct:   37 FLHGAPNKVPFEYLTDIGDIDNNGHPDYLVSNPSANNHTGSLQLHLITNNHTSLFTRQIIPSTPNSDTPALKPHDNFAASVANLSQNKDRSLSRILVGAPGD---ANGTGAVYVLTLTRTGNLVHSTKLSASNLQSAANDHAPRNRLGATLSVSHDPKEHGSVKVVVGAASGLPLTVFIKPSGDLQQTPVTKRLEQLTRLTRRASRGSNRSDTARFPMRGKTVRQADSGECLFSDSYCACTLAAAEAGSLACMDVVGTEVGTGRKLCEIRDCEATYECRCDGAEHCSREEVTFTTFVSEGVAGGGRMYCTSVSTTVMQNLVLNVVPFPAPDVRQLVHDGADAQPYTATNCRCSLRSAVQQASTCLDFLREEGDGIRLCSRRACQFKDDEYVCDVFGTTYCGRESVASRWYVSEGDYAED-GVEVCRLESGNKERV 467          
The following BLAST results are available for this feature:
BLAST of Gchil1989.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFU4_9FLOR4.600e-20954.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q231_CHOCR2.900e-7333.79Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028994Integrin alpha, N-terminalGENE3D2.130.10.130coord: 160..304
e-value: 2.0E-6
score: 29.2
IPR028994Integrin alpha, N-terminalSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 164..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..124
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..576
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1571847..1573577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1989.t1Gchil1989.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1571847..1573577 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1989.t1 ID=Gchil1989.t1|Name=Gchil1989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=577bp
MAFEILRRWAFVFVLALLFGLIRGSEDAETPISLKTIAQVKKAIEHLSLK
DKNKMTNKNVSVWNLHFLKHIADMKELSEDTIQNELSHSPDIDSDGNQAQ
TTQRTTNQTSKRADGDKTKGKGNSSIARVLREMIKAVGEASQKRSAQSFI
RIGKAEIPREKVTAVGDVDDNGFEDYVVSNPASMNDTGTIRLYLMTNDNK
FLYTRDLVPGKYGFTGSPLTPGDRFGDNVEKIASDMPNFSFVTVTAPGDR
SVAGDKGAFYILQLSDKGNVINSAKLSAKTVETVVTNPASKNSIQNTNEL
NRSILSKKIVEILSNKTSMLLVRKEGEIKGAYVITSPEDHKMLRQIEGKM
TPRKRLASLRLDSPLVRAEISSSCFFNETHCACASKAPAEGSAQCTRVVG
TEESSGRTLCLTRDCMASHSCMCEGTELCVRTERTLTSYVTDGAAPGGNM
YCNPVQKTITENVLIPGAEVPVILSVNDLPPYNATHCRCANKQSVTGGAT
CLDVLRQISGINYVCSERACRIGAGEFVCDAFGASYCSRSFVEKIHYVKD
GEKPDEPGAILCHREAYQAESVVKIM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028994Integrin_alpha_N