Gchil1989.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1989.t1
Unique NameGchil1989.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length577
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1571847..1573577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1989Gchil1989Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1571847..1573577 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1989.t1.stop1Gchil1989.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1571847..1571849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1989.t1.CDS1Gchil1989.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1571847..1573577 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1989.t1.exon1Gchil1989.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1571847..1573577 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1989.t1.start1Gchil1989.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1573575..1573577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1989.t1Gchil1989.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1571847..1573577 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1989.t1 ID=Gchil1989.t1|Name=Gchil1989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=577bp
MAFEILRRWAFVFVLALLFGLIRGSEDAETPISLKTIAQVKKAIEHLSLK
DKNKMTNKNVSVWNLHFLKHIADMKELSEDTIQNELSHSPDIDSDGNQAQ
TTQRTTNQTSKRADGDKTKGKGNSSIARVLREMIKAVGEASQKRSAQSFI
RIGKAEIPREKVTAVGDVDDNGFEDYVVSNPASMNDTGTIRLYLMTNDNK
FLYTRDLVPGKYGFTGSPLTPGDRFGDNVEKIASDMPNFSFVTVTAPGDR
SVAGDKGAFYILQLSDKGNVINSAKLSAKTVETVVTNPASKNSIQNTNEL
NRSILSKKIVEILSNKTSMLLVRKEGEIKGAYVITSPEDHKMLRQIEGKM
TPRKRLASLRLDSPLVRAEISSSCFFNETHCACASKAPAEGSAQCTRVVG
TEESSGRTLCLTRDCMASHSCMCEGTELCVRTERTLTSYVTDGAAPGGNM
YCNPVQKTITENVLIPGAEVPVILSVNDLPPYNATHCRCANKQSVTGGAT
CLDVLRQISGINYVCSERACRIGAGEFVCDAFGASYCSRSFVEKIHYVKD
GEKPDEPGAILCHREAYQAESVVKIM*
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spliced messenger RNA

>Gchil1989.t1 ID=Gchil1989.t1|Name=Gchil1989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00004439_pilon:1571847..1573577- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGAAATTCTCCGGCGTTGGGCTTTCGTTTTCGTTTTGGCGCT
CCTCTTCGGATTAATCCGCGGCAGCGAGGATGCGGAAACACCAATCAGCT
TGAAAACGATAGCTCAGGTGAAGAAAGCAATAGAGCATCTCAGCTTGAAG
GATAAGAACAAGATGACCAACAAGAACGTTTCTGTGTGGAACCTGCACTT
TCTGAAGCATATCGCAGATATGAAAGAACTCTCGGAGGACACCATTCAAA
ATGAACTCTCTCACTCCCCAGACATCGACAGCGACGGTAATCAGGCCCAG
ACCACTCAAAGAACCACCAATCAAACTTCCAAGCGGGCTGATGGAGACAA
AACAAAAGGCAAAGGCAACTCATCTATCGCTCGCGTGCTGAGGGAGATGA
TCAAAGCGGTGGGAGAAGCTTCACAGAAAAGATCTGCACAATCCTTCATT
CGAATTGGAAAGGCAGAAATTCCGCGCGAGAAAGTCACGGCAGTTGGGGA
TGTTGACGATAATGGATTTGAAGATTACGTAGTATCGAACCCAGCTTCTA
TGAATGATACTGGCACAATTCGTCTGTACCTCATGACCAACGATAACAAG
TTTTTGTACACGAGAGATCTTGTGCCCGGAAAATACGGATTCACCGGTTC
ACCTCTCACTCCGGGAGATCGATTCGGTGACAATGTGGAGAAGATAGCAA
GTGATATGCCTAACTTTTCGTTTGTGACTGTCACAGCTCCAGGGGATCGC
TCTGTGGCGGGAGACAAAGGAGCATTCTACATTCTGCAACTATCCGACAA
GGGAAACGTGATCAACAGTGCCAAACTCTCAGCCAAGACTGTCGAAACAG
TTGTAACCAATCCGGCCAGCAAAAACTCTATTCAAAACACAAACGAACTG
AACCGATCCATTCTCTCCAAGAAGATCGTGGAAATTCTCAGCAACAAAAC
GTCCATGCTGCTTGTTCGAAAAGAAGGAGAAATCAAGGGTGCATACGTGA
TCACTTCTCCGGAAGATCATAAGATGTTGCGCCAAATCGAAGGAAAGATG
ACACCCAGAAAACGACTCGCATCACTTCGTCTGGACTCGCCTCTAGTTCG
CGCGGAAATATCAAGCAGCTGTTTCTTCAACGAAACACACTGTGCCTGCG
CCTCGAAAGCCCCCGCCGAAGGGTCTGCGCAATGTACGCGAGTGGTCGGC
ACAGAGGAATCAAGCGGAAGAACATTGTGTCTGACGCGTGATTGCATGGC
ATCTCATTCCTGTATGTGCGAAGGAACCGAACTGTGCGTGCGCACTGAAC
GAACACTAACGTCATACGTGACGGACGGTGCAGCGCCGGGAGGAAACATG
TATTGCAACCCCGTGCAGAAGACAATTACAGAAAACGTGCTGATTCCTGG
CGCTGAGGTGCCGGTGATTCTGAGCGTAAATGATTTGCCACCGTACAATG
CTACACATTGTCGTTGTGCGAATAAGCAGTCTGTGACAGGAGGGGCGACT
TGTTTGGACGTGCTTCGTCAAATCAGTGGCATAAACTATGTGTGCTCCGA
AAGGGCGTGCAGAATTGGAGCGGGTGAATTTGTTTGTGATGCGTTTGGTG
CGTCATATTGCAGTCGTAGCTTTGTTGAGAAGATTCATTACGTGAAAGAC
GGAGAAAAGCCAGATGAACCAGGGGCGATCTTATGCCACCGCGAGGCGTA
CCAAGCAGAGAGCGTTGTGAAGATAATGTAA
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protein sequence of Gchil1989.t1

>Gchil1989.t1 ID=Gchil1989.t1|Name=Gchil1989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=577bp
MAFEILRRWAFVFVLALLFGLIRGSEDAETPISLKTIAQVKKAIEHLSLK
DKNKMTNKNVSVWNLHFLKHIADMKELSEDTIQNELSHSPDIDSDGNQAQ
TTQRTTNQTSKRADGDKTKGKGNSSIARVLREMIKAVGEASQKRSAQSFI
RIGKAEIPREKVTAVGDVDDNGFEDYVVSNPASMNDTGTIRLYLMTNDNK
FLYTRDLVPGKYGFTGSPLTPGDRFGDNVEKIASDMPNFSFVTVTAPGDR
SVAGDKGAFYILQLSDKGNVINSAKLSAKTVETVVTNPASKNSIQNTNEL
NRSILSKKIVEILSNKTSMLLVRKEGEIKGAYVITSPEDHKMLRQIEGKM
TPRKRLASLRLDSPLVRAEISSSCFFNETHCACASKAPAEGSAQCTRVVG
TEESSGRTLCLTRDCMASHSCMCEGTELCVRTERTLTSYVTDGAAPGGNM
YCNPVQKTITENVLIPGAEVPVILSVNDLPPYNATHCRCANKQSVTGGAT
CLDVLRQISGINYVCSERACRIGAGEFVCDAFGASYCSRSFVEKIHYVKD
GEKPDEPGAILCHREAYQAESVVKIM*
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mRNA from alignment at tig00004439_pilon:1571847..1573577-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1989.t1 ID=Gchil1989.t1|Name=Gchil1989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00004439_pilon:1571847..1573577- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTCGAAATTCTCCGGCGTTGGGCTTTCGTTTTCGTTTTGGCGCT
CCTCTTCGGATTAATCCGCGGCAGCGAGGATGCGGAAACACCAATCAGCT
TGAAAACGATAGCTCAGGTGAAGAAAGCAATAGAGCATCTCAGCTTGAAG
GATAAGAACAAGATGACCAACAAGAACGTTTCTGTGTGGAACCTGCACTT
TCTGAAGCATATCGCAGATATGAAAGAACTCTCGGAGGACACCATTCAAA
ATGAACTCTCTCACTCCCCAGACATCGACAGCGACGGTAATCAGGCCCAG
ACCACTCAAAGAACCACCAATCAAACTTCCAAGCGGGCTGATGGAGACAA
AACAAAAGGCAAAGGCAACTCATCTATCGCTCGCGTGCTGAGGGAGATGA
TCAAAGCGGTGGGAGAAGCTTCACAGAAAAGATCTGCACAATCCTTCATT
CGAATTGGAAAGGCAGAAATTCCGCGCGAGAAAGTCACGGCAGTTGGGGA
TGTTGACGATAATGGATTTGAAGATTACGTAGTATCGAACCCAGCTTCTA
TGAATGATACTGGCACAATTCGTCTGTACCTCATGACCAACGATAACAAG
TTTTTGTACACGAGAGATCTTGTGCCCGGAAAATACGGATTCACCGGTTC
ACCTCTCACTCCGGGAGATCGATTCGGTGACAATGTGGAGAAGATAGCAA
GTGATATGCCTAACTTTTCGTTTGTGACTGTCACAGCTCCAGGGGATCGC
TCTGTGGCGGGAGACAAAGGAGCATTCTACATTCTGCAACTATCCGACAA
GGGAAACGTGATCAACAGTGCCAAACTCTCAGCCAAGACTGTCGAAACAG
TTGTAACCAATCCGGCCAGCAAAAACTCTATTCAAAACACAAACGAACTG
AACCGATCCATTCTCTCCAAGAAGATCGTGGAAATTCTCAGCAACAAAAC
GTCCATGCTGCTTGTTCGAAAAGAAGGAGAAATCAAGGGTGCATACGTGA
TCACTTCTCCGGAAGATCATAAGATGTTGCGCCAAATCGAAGGAAAGATG
ACACCCAGAAAACGACTCGCATCACTTCGTCTGGACTCGCCTCTAGTTCG
CGCGGAAATATCAAGCAGCTGTTTCTTCAACGAAACACACTGTGCCTGCG
CCTCGAAAGCCCCCGCCGAAGGGTCTGCGCAATGTACGCGAGTGGTCGGC
ACAGAGGAATCAAGCGGAAGAACATTGTGTCTGACGCGTGATTGCATGGC
ATCTCATTCCTGTATGTGCGAAGGAACCGAACTGTGCGTGCGCACTGAAC
GAACACTAACGTCATACGTGACGGACGGTGCAGCGCCGGGAGGAAACATG
TATTGCAACCCCGTGCAGAAGACAATTACAGAAAACGTGCTGATTCCTGG
CGCTGAGGTGCCGGTGATTCTGAGCGTAAATGATTTGCCACCGTACAATG
CTACACATTGTCGTTGTGCGAATAAGCAGTCTGTGACAGGAGGGGCGACT
TGTTTGGACGTGCTTCGTCAAATCAGTGGCATAAACTATGTGTGCTCCGA
AAGGGCGTGCAGAATTGGAGCGGGTGAATTTGTTTGTGATGCGTTTGGTG
CGTCATATTGCAGTCGTAGCTTTGTTGAGAAGATTCATTACGTGAAAGAC
GGAGAAAAGCCAGATGAACCAGGGGCGATCTTATGCCACCGCGAGGCGTA
CCAAGCAGAGAGCGTTGTGAAGATAATGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1571847..1573577-

>Gchil1989.t1 ID=Gchil1989.t1|Name=Gchil1989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00004439_pilon:1571847..1573577- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTCGAAATTCTCCGGCGTTGGGCTTTCGTTTTCGTTTTGGCGCT
CCTCTTCGGATTAATCCGCGGCAGCGAGGATGCGGAAACACCAATCAGCT
TGAAAACGATAGCTCAGGTGAAGAAAGCAATAGAGCATCTCAGCTTGAAG
GATAAGAACAAGATGACCAACAAGAACGTTTCTGTGTGGAACCTGCACTT
TCTGAAGCATATCGCAGATATGAAAGAACTCTCGGAGGACACCATTCAAA
ATGAACTCTCTCACTCCCCAGACATCGACAGCGACGGTAATCAGGCCCAG
ACCACTCAAAGAACCACCAATCAAACTTCCAAGCGGGCTGATGGAGACAA
AACAAAAGGCAAAGGCAACTCATCTATCGCTCGCGTGCTGAGGGAGATGA
TCAAAGCGGTGGGAGAAGCTTCACAGAAAAGATCTGCACAATCCTTCATT
CGAATTGGAAAGGCAGAAATTCCGCGCGAGAAAGTCACGGCAGTTGGGGA
TGTTGACGATAATGGATTTGAAGATTACGTAGTATCGAACCCAGCTTCTA
TGAATGATACTGGCACAATTCGTCTGTACCTCATGACCAACGATAACAAG
TTTTTGTACACGAGAGATCTTGTGCCCGGAAAATACGGATTCACCGGTTC
ACCTCTCACTCCGGGAGATCGATTCGGTGACAATGTGGAGAAGATAGCAA
GTGATATGCCTAACTTTTCGTTTGTGACTGTCACAGCTCCAGGGGATCGC
TCTGTGGCGGGAGACAAAGGAGCATTCTACATTCTGCAACTATCCGACAA
GGGAAACGTGATCAACAGTGCCAAACTCTCAGCCAAGACTGTCGAAACAG
TTGTAACCAATCCGGCCAGCAAAAACTCTATTCAAAACACAAACGAACTG
AACCGATCCATTCTCTCCAAGAAGATCGTGGAAATTCTCAGCAACAAAAC
GTCCATGCTGCTTGTTCGAAAAGAAGGAGAAATCAAGGGTGCATACGTGA
TCACTTCTCCGGAAGATCATAAGATGTTGCGCCAAATCGAAGGAAAGATG
ACACCCAGAAAACGACTCGCATCACTTCGTCTGGACTCGCCTCTAGTTCG
CGCGGAAATATCAAGCAGCTGTTTCTTCAACGAAACACACTGTGCCTGCG
CCTCGAAAGCCCCCGCCGAAGGGTCTGCGCAATGTACGCGAGTGGTCGGC
ACAGAGGAATCAAGCGGAAGAACATTGTGTCTGACGCGTGATTGCATGGC
ATCTCATTCCTGTATGTGCGAAGGAACCGAACTGTGCGTGCGCACTGAAC
GAACACTAACGTCATACGTGACGGACGGTGCAGCGCCGGGAGGAAACATG
TATTGCAACCCCGTGCAGAAGACAATTACAGAAAACGTGCTGATTCCTGG
CGCTGAGGTGCCGGTGATTCTGAGCGTAAATGATTTGCCACCGTACAATG
CTACACATTGTCGTTGTGCGAATAAGCAGTCTGTGACAGGAGGGGCGACT
TGTTTGGACGTGCTTCGTCAAATCAGTGGCATAAACTATGTGTGCTCCGA
AAGGGCGTGCAGAATTGGAGCGGGTGAATTTGTTTGTGATGCGTTTGGTG
CGTCATATTGCAGTCGTAGCTTTGTTGAGAAGATTCATTACGTGAAAGAC
GGAGAAAAGCCAGATGAACCAGGGGCGATCTTATGCCACCGCGAGGCGTA
CCAAGCAGAGAGCGTTGTGAAGATAATGTAA
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