Gchil1937.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1937.t1
Unique NameGchil1937.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length385
Homology
BLAST of Gchil1937.t1 vs. uniprot
Match: A0A2V3IEY3_9FLOR (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEY3_9FLOR)

HSP 1 Score: 203 bits (517), Expect = 3.350e-58
Identity = 135/378 (35.71%), Postives = 193/378 (51.06%), Query Frame = 0
Query:    2 CGTPLRPPM-LRKHLQ-RCPAAARAAAVAARPWFVPNVNDAPPDXXXXXXXXXXXXXXXXXTLVAPVRAARLRALGLLEHALRTDAAERQAAA--DTATVRALWGDTRDSSLRLQPRHFAQMSALTALSLHATQPHQHATPFIVELGAGRAYLSLFAAHMLRLRGLRPRIAAIDRRAPRFRADRTLRAWTTGRLVSDFARFTTELSHVELALVPGVLDASHVLLLGKHVCGDGTDISLAAATRLAR-VAPHTS----VVSLVLAPCCRALCSARSCVARAWWRPRRALPLFAQLCRLSARSLHVADHNHHVHPAAXXXXXXXXXXXXXXXXXXXXXXXRVAIDSARVRWLRRNGWRAHLYRYTQHSPEDLCIVATWSP 370
            CGT LR    L+KH+  RCP   R        W+  + N  PP                      PV  A    L  L+ AL      R  AA  +   +   W D RDSS+++QP+HF Q+++L AL+L +  P Q   P ++ELGAGRAY ++FAA++L LR   P +   DR   R++ADRTLRAW +   ++ F R TT+L+ +++  +P +   + V +LGKH+CGD +D+++  ATRLAR +  H +    V++LVLA CCRALC+ R+       +P  +   FA +    A  L     N                              R+ IDSARV+W+  NGW+A L  YT+ SPE+ CIVATW+P
Sbjct:   49 CGTRLRDAAALKKHVTARCPVTRRRRVAQQANWYSASTNLPPPSTANNI----------------PVARALPLVLHTLQTALPAPRKMRAPAALPELRLISDAWSDQRDSSVKMQPKHFTQIASLCALALSSHTPSQPHQPAVIELGAGRAYTAMFAANVLSLRDDPPHVLVTDRHTTRWKADRTLRAWQSTGKIASFTRCTTDLADLDMRRLPFLQTCNRVYILGKHLCGDASDLAIYGATRLARHLHQHANDTPAVITLVLACCCRALCTDRTYTFDQCLKPHISPSEFAAITPCCALGLDEKRRN----------------------KPHLGNQCRLLIDSARVQWMNANGWQAALCTYTKVSPENTCIVATWNP 388          
BLAST of Gchil1937.t1 vs. uniprot
Match: R7QPM9_CHOCR (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPM9_CHOCR)

HSP 1 Score: 145 bits (366), Expect = 2.920e-36
Identity = 117/367 (31.88%), Postives = 155/367 (42.23%), Query Frame = 0
Query:   11 LRKHLQRCPAAARAAAVAARPWFVPNVNDAPPDXXXXXXXXXXXXXXXXXTLVAPVRAARLRALG---LLEHALRTDAAERQ-AAADTATVRALWGDTRDSSLRLQPRHFAQMSALTALSLHATQPHQHATPFIVELGAGRAYLSLFAAHMLRLRGLRPRIAAIDRRAPRFRADRTLRAWTTGR--LVSDFARFTTELSHVELALVPGVLDASHVLLLGKHVCGDGTDISLAAATRLARVAPH-TSVVSLVLAPCCRALC--SARSCVARAWWRPRRALPLFAQLCRLSARSLHVADHNHHVHPAAXXXXXXXXXXXXXXXXXXXXXXXRVAIDSARVRWLRRNGWRAHLYRYTQHSPEDLCIVATW 368
            L KHL  CPAA R      +PW VP  N                               RL + G   L    + T   +R     + A + A W D+R+S ++L+P+HFAQ   L A  LH     + A   ++ELGAGRAY SL+ AH+L  RGL     A+DR   R +ADRT+R W       +  F R   +++   +  V  +  A+ V L+GKHVCG   D SL AAT  AR        V L+ A CCR LC         + W         +  +CRL+   L       +                            R+ +D  RVRWLRR GW A+   YT  SPE+ CI A W
Sbjct:   40 LSKHLPICPAARRIRKEREQPWCVPACNIYRQSVSYKQTLYSKSPLQLDEIEHVMKTVQRLLSTGKDSLAPPWVPTLPVQRSFLLEEDADIAAEWADSRNSQMKLEPKHFAQFGPLAASLLHHPPTDKLA---VLELGAGRAYTSLYVAHVLHKRGLPASFVAVDRAGGRHKADRTIRNWVDNADSPLRTFRRIKCDVADFRIREVDEIRTATDVRLIGKHVCGAALDASLNAATNFAREERKGAGEVRLIFACCCRRLCRWDWLGEAQKIWLDWGVDDKFYEVICRLAQWGLDQKQAQEYAE---------------------IGKKCRLLLDMGRVRWLRRQGWDAYCGEYTTASPENRCIAAVW 382          
BLAST of Gchil1937.t1 vs. uniprot
Match: A9T567_PHYPA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T567_PHYPA)

HSP 1 Score: 59.3 bits (142), Expect = 5.830e-6
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0
Query:  140 IVELGAGRAYLSLFAAHMLRLRGLRPRIAAIDRRAPRFRADRTLRAWTTGRLVSDFARFTTELSHVELALVPGVLDASHVLLLGKHVCGDGTDISLAAATRL------ARVAPHTSVVSLVLAPCCRALCSARSCVARAWWR 275
            IVELGAGR YLS        +     ++  ++RRA +F+ADRT+R  + G ++    R   ++  + L  V  +L   HV+ + KH+CG  TD+SL    +       A+      V  + +A CC  LC  +S V + +++
Sbjct:  247 IVELGAGRGYLSQMLCDCYTVH----KVVMVERRAYKFKADRTIRH-SNGLILE---RLRLDIEDLNLNQVS-LLQDCHVVAISKHLCGPATDLSLRCCLKTIPNQKDAQSQVKPVVDGIAIATCCHHLCQWKSYVNKKYFK 379          
The following BLAST results are available for this feature:
BLAST of Gchil1937.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IEY3_9FLOR3.350e-5835.71tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Graci... [more]
R7QPM9_CHOCR2.920e-3631.88tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Chond... [more]
A9T567_PHYPA5.830e-630.99tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Physc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007871Methyltransferase TRM13PFAMPF05206TRM13coord: 136..366
e-value: 2.0E-25
score: 89.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..60
IPR039044tRNA:m(4)X modification enzyme Trm13PANTHERPTHR12998UNCHARACTERIZEDcoord: 11..367

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1239256..1240410 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1937.t1Gchil1937.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1239256..1240410 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1937.t1 ID=Gchil1937.t1|Name=Gchil1937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=385bp
MCGTPLRPPMLRKHLQRCPAAARAAAVAARPWFVPNVNDAPPDADAEPDA
EPDADGNANGTLVAPVRAARLRALGLLEHALRTDAAERQAAADTATVRAL
WGDTRDSSLRLQPRHFAQMSALTALSLHATQPHQHATPFIVELGAGRAYL
SLFAAHMLRLRGLRPRIAAIDRRAPRFRADRTLRAWTTGRLVSDFARFTT
ELSHVELALVPGVLDASHVLLLGKHVCGDGTDISLAAATRLARVAPHTSV
VSLVLAPCCRALCSARSCVARAWWRPRRALPLFAQLCRLSARSLHVADHN
HHVHPAAHPAAHPAAHPANAAANAAAAAAARVAIDSARVRWLRRNGWRAH
LYRYTQHSPEDLCIVATWSPAASSPPKPSPPHSM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007871Methyltransferase_TRM13
IPR039044Trm13