Gchil1937.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1937.t1
Unique Name	Gchil1937.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1239256..1240410 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4537.OPUNC03G37120.1
PFAMs	TRM13,zf-TRM13_CCCH,zf-U11-48K
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15446
GOs	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue	9.42e-07
EggNOG OGs	KOG2811@1\|root,KOG2811@2759\|Eukaryota,37MD2@33090\|Viridiplantae,3GEK1@35493\|Streptophyta,3KP37@4447\|Liliopsida,3IG6W@38820\|Poales
EC	2.1.1.225
Description	Methyltransferase TRM13
COG category	S
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1937	Gchil1937	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1239256..1240410 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1937.t1.start1	Gchil1937.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1239256..1239258 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1937.t1.CDS1	Gchil1937.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1239256..1240410 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1937.t1.exon1	Gchil1937.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1239256..1240410 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1937.t1.stop1	Gchil1937.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1240408..1240410 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1937.t1	Gchil1937.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1239256..1240410 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1239256..1240410+
coding sequence from alignment at tig00004439_pilon:1239256..1240410+

mRNA sequence

>Gchil1937.t1 ID=Gchil1937.t1|Name=Gchil1937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=385bp
MCGTPLRPPMLRKHLQRCPAAARAAAVAARPWFVPNVNDAPPDADAEPDA
EPDADGNANGTLVAPVRAARLRALGLLEHALRTDAAERQAAADTATVRAL
WGDTRDSSLRLQPRHFAQMSALTALSLHATQPHQHATPFIVELGAGRAYL
SLFAAHMLRLRGLRPRIAAIDRRAPRFRADRTLRAWTTGRLVSDFARFTT
ELSHVELALVPGVLDASHVLLLGKHVCGDGTDISLAAATRLARVAPHTSV
VSLVLAPCCRALCSARSCVARAWWRPRRALPLFAQLCRLSARSLHVADHN
HHVHPAAHPAAHPAAHPANAAANAAAAAAARVAIDSARVRWLRRNGWRAH
LYRYTQHSPEDLCIVATWSPAASSPPKPSPPHSM*

spliced messenger RNA

>Gchil1937.t1 ID=Gchil1937.t1|Name=Gchil1937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00004439_pilon:1239256..1240410+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGCACGCCGCTGCGCCCGCCCATGCTGCGCAAGCATCTGCAACG
CTGTCcggccgcggcgcgcgccgccgccgttgccgcgcgccCCTGGTTCG
TCCCCAACGTCAACGACGCCCCGCccgacgccgacgccgagcccgacgcc
gagcccgacgccgacgGCAATGCAAATGGCACGCTGGTGGCGCCGGTGCG
CGCGGCGCGGCTGCGCGCGCTGGGCTTGCTTGAGCACGCATTGCGCACGG
ACGCGGCGGAGCGTCAAGCCGCAGCGGACACGGCAACGGTGCGCGCGCTG
TGGGGCGACACCCGCGACAGTTCCCTCCGTCTACAGCCTCGTCACTTTGC
GCAGATGAGTGCGCTCACGGCGCTCAGTCTACACGCGACGCAGCCTCACC
AACACGCCACGCCCTTCATCGTGGAGCTAGGCGCCGGACGCGCCTATCTC
TCACTCTTCGCCGCGCACATGCTACGTCTACGCGGGCTACGCCCGCGCAT
AGCAGCGATAGATCGTCGCGCGCCGCGCTTCCGCGCGGACCGCACGCTAC
GCGCGTGGACCACTGGTCGCTTGGTCAGCGACTTTGCGCGCTTCACCACG
GAGCTGTCGCACGTGGAGCTGGCGCTTGTACCCGGCGTGCTTGACGCGTC
GCACGTGCTACTGCTGGGCAAGCACGTGTGCGGCGATGGCACCGACATTT
CACTGGCGGCCGCTACGCGCTTAGCGCGTGTTGCGCCGCACACCTCCGTT
GTGTCGCTTGTGTTGGCGCCGTGCTGTCGTGCCTTGTGCTCCGCGCGTTC
GTGCGTCGCGCGCGCTTGGTGGCGTCCGCGTCGCGCCCTGCCGCTCTTTG
CCCAGCTCTGTCGTCTTTCCGCGCGTTCGCTGCACGTCGCCGACCACAAC
CACCACGTCCACCCCGCCGCCCACCCCGCCGCCCACCCCGCCGCCCACCC
CGCCAACGCCGCCGCCAACGCCGCCGCCGCCGCCGCTGCGCGCGTCGCCA
TCGACTCGGCCCGCGTGCGCTGGCTCCGCCGCAACGGCTGGCGCGCCCAT
CTGTATCGCTACACCCAACACAGCCCCGAGGACCTCTGCATCGTCGCCAC
CTGGTCCCCCGCCGCGTCGTCGCCGCCCAAGCCCTCTCCGCCGCACTCCA
TGTAA

protein sequence of Gchil1937.t1

>Gchil1937.t1 ID=Gchil1937.t1|Name=Gchil1937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=385bp
MCGTPLRPPMLRKHLQRCPAAARAAAVAARPWFVPNVNDAPPDADAEPDA
EPDADGNANGTLVAPVRAARLRALGLLEHALRTDAAERQAAADTATVRAL
WGDTRDSSLRLQPRHFAQMSALTALSLHATQPHQHATPFIVELGAGRAYL
SLFAAHMLRLRGLRPRIAAIDRRAPRFRADRTLRAWTTGRLVSDFARFTT
ELSHVELALVPGVLDASHVLLLGKHVCGDGTDISLAAATRLARVAPHTSV
VSLVLAPCCRALCSARSCVARAWWRPRRALPLFAQLCRLSARSLHVADHN
HHVHPAAHPAAHPAAHPANAAANAAAAAAARVAIDSARVRWLRRNGWRAH
LYRYTQHSPEDLCIVATWSPAASSPPKPSPPHSM*

mRNA from alignment at tig00004439_pilon:1239256..1240410+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1937.t1 ID=Gchil1937.t1|Name=Gchil1937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00004439_pilon:1239256..1240410+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGGCACGCCGCTGCGCCCGCCCATGCTGCGCAAGCATCTGCAACG
CTGTCcggccgcggcgcgcgccgccgccgttgccgcgcgccCCTGGTTCG
TCCCCAACGTCAACGACGCCCCGCccgacgccgacgccgagcccgacgcc
gagcccgacgccgacgGCAATGCAAATGGCACGCTGGTGGCGCCGGTGCG
CGCGGCGCGGCTGCGCGCGCTGGGCTTGCTTGAGCACGCATTGCGCACGG
ACGCGGCGGAGCGTCAAGCCGCAGCGGACACGGCAACGGTGCGCGCGCTG
TGGGGCGACACCCGCGACAGTTCCCTCCGTCTACAGCCTCGTCACTTTGC
GCAGATGAGTGCGCTCACGGCGCTCAGTCTACACGCGACGCAGCCTCACC
AACACGCCACGCCCTTCATCGTGGAGCTAGGCGCCGGACGCGCCTATCTC
TCACTCTTCGCCGCGCACATGCTACGTCTACGCGGGCTACGCCCGCGCAT
AGCAGCGATAGATCGTCGCGCGCCGCGCTTCCGCGCGGACCGCACGCTAC
GCGCGTGGACCACTGGTCGCTTGGTCAGCGACTTTGCGCGCTTCACCACG
GAGCTGTCGCACGTGGAGCTGGCGCTTGTACCCGGCGTGCTTGACGCGTC
GCACGTGCTACTGCTGGGCAAGCACGTGTGCGGCGATGGCACCGACATTT
CACTGGCGGCCGCTACGCGCTTAGCGCGTGTTGCGCCGCACACCTCCGTT
GTGTCGCTTGTGTTGGCGCCGTGCTGTCGTGCCTTGTGCTCCGCGCGTTC
GTGCGTCGCGCGCGCTTGGTGGCGTCCGCGTCGCGCCCTGCCGCTCTTTG
CCCAGCTCTGTCGTCTTTCCGCGCGTTCGCTGCACGTCGCCGACCACAAC
CACCACGTCCACCCCGCCGCCCACCCCGCCGCCCACCCCGCCGCCCACCC
CGCCAACGCCGCCGCCAACGCCGCCGCCGCCGCCGCTGCGCGCGTCGCCA
TCGACTCGGCCCGCGTGCGCTGGCTCCGCCGCAACGGCTGGCGCGCCCAT
CTGTATCGCTACACCCAACACAGCCCCGAGGACCTCTGCATCGTCGCCAC
CTGGTCCCCCGCCGCGTCGTCGCCGCCCAAGCCCTCTCCGCCGCACTCCA
TGTAA

Coding sequence (CDS) from alignment at tig00004439_pilon:1239256..1240410+

>Gchil1937.t1 ID=Gchil1937.t1|Name=Gchil1937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00004439_pilon:1239256..1240410+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGGCACGCCGCTGCGCCCGCCCATGCTGCGCAAGCATCTGCAACG
CTGTCcggccgcggcgcgcgccgccgccgttgccgcgcgccCCTGGTTCG
TCCCCAACGTCAACGACGCCCCGCccgacgccgacgccgagcccgacgcc
gagcccgacgccgacgGCAATGCAAATGGCACGCTGGTGGCGCCGGTGCG
CGCGGCGCGGCTGCGCGCGCTGGGCTTGCTTGAGCACGCATTGCGCACGG
ACGCGGCGGAGCGTCAAGCCGCAGCGGACACGGCAACGGTGCGCGCGCTG
TGGGGCGACACCCGCGACAGTTCCCTCCGTCTACAGCCTCGTCACTTTGC
GCAGATGAGTGCGCTCACGGCGCTCAGTCTACACGCGACGCAGCCTCACC
AACACGCCACGCCCTTCATCGTGGAGCTAGGCGCCGGACGCGCCTATCTC
TCACTCTTCGCCGCGCACATGCTACGTCTACGCGGGCTACGCCCGCGCAT
AGCAGCGATAGATCGTCGCGCGCCGCGCTTCCGCGCGGACCGCACGCTAC
GCGCGTGGACCACTGGTCGCTTGGTCAGCGACTTTGCGCGCTTCACCACG
GAGCTGTCGCACGTGGAGCTGGCGCTTGTACCCGGCGTGCTTGACGCGTC
GCACGTGCTACTGCTGGGCAAGCACGTGTGCGGCGATGGCACCGACATTT
CACTGGCGGCCGCTACGCGCTTAGCGCGTGTTGCGCCGCACACCTCCGTT
GTGTCGCTTGTGTTGGCGCCGTGCTGTCGTGCCTTGTGCTCCGCGCGTTC
GTGCGTCGCGCGCGCTTGGTGGCGTCCGCGTCGCGCCCTGCCGCTCTTTG
CCCAGCTCTGTCGTCTTTCCGCGCGTTCGCTGCACGTCGCCGACCACAAC
CACCACGTCCACCCCGCCGCCCACCCCGCCGCCCACCCCGCCGCCCACCC
CGCCAACGCCGCCGCCAACGCCGCCGCCGCCGCCGCTGCGCGCGTCGCCA
TCGACTCGGCCCGCGTGCGCTGGCTCCGCCGCAACGGCTGGCGCGCCCAT
CTGTATCGCTACACCCAACACAGCCCCGAGGACCTCTGCATCGTCGCCAC
CTGGTCCCCCGCCGCGTCGTCGCCGCCCAAGCCCTCTCCGCCGCACTCCA
TGTAA