Gchil1936.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1936.t1
Unique NameGchil1936.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length724
Homology
BLAST of Gchil1936.t1 vs. uniprot
Match: A0A2V3IES9_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IES9_9FLOR)

HSP 1 Score: 213 bits (541), Expect = 2.410e-55
Identity = 129/206 (62.62%), Postives = 142/206 (68.93%), Query Frame = 0
Query:   16 ALVRSHAAAQPAAQPPPRPAFPTAARALDRAVAAAWGAPVTLHPVQSIWASTGVWTADDPKRRRRDA-RTVPPADAVLCPTAAAATAAHPDRPAAPSVVCAVXXXXXXXXXXXXXXAAAPAAHLP---TSDPHVVRQLENCLRRRKVDRARDILFENAPRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLLRDVASFSIM 217
            ALVR+ AAAQ      PR  + TAARALDRAVAAAWGAPV+LHPVQSIWA+TGVWTADDPKRRRRD  R VPPA+AVLCPT    +AAH   P +  +                      A H P   +SDP +VR LEN LRRRK+DRARDILFEN    VF TRHYNSLLDA VKANRL DAE+LFAEF RN L  DVAS+SIM
Sbjct:   68 ALVRNTAAAQXXXXXXPRAPYATAARALDRAVAAAWGAPVSLHPVQSIWANTGVWTADDPKRRRRDPHRPVPPAEAVLCPTVEPPSAAHSAPPLSTLI--------PPSAPTPLRTHVNSAQHTPPAKSSDPDLVRLLENSLRRRKLDRARDILFENFGTAVFHTRHYNSLLDAFVKANRLPDAELLFAEFGRNSLTPDVASYSIM 265          
BLAST of Gchil1936.t1 vs. uniprot
Match: R7QMM7_CHOCR (PPR_long domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMM7_CHOCR)

HSP 1 Score: 96.3 bits (238), Expect = 7.650e-17
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0
Query:  139 PTSDPHVVRQLENCLRRRKVDRARDILFENAPRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLLRDVASFSIMI 218
            P     VVRQLENC+RRRK+D+ARDIL  +A  RVF TRHYN+LL AL K+NR+ +AE LF +F  +GL  DVAS SIMI
Sbjct:  198 PQDQVDVVRQLENCIRRRKLDKARDILLGHATTRVFGTRHYNALLAALAKSNRVDEAERLFCQFANSGLAHDVASHSIMI 277          
BLAST of Gchil1936.t1 vs. uniprot
Match: A0A1X6NU58_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NU58_PORUM)

HSP 1 Score: 69.7 bits (169), Expect = 1.190e-8
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  145 VVRQLENCLRRRKVDRARDILFENAPRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRN-GLLRDVASFSIMICAYGK 223
            ++R+LE CLR+RK+DRA  I+ E     +   RH N++LDAL K+ R+ +A+ LF +FD    L RDVA+ SIM+  YGK
Sbjct:  373 LLRRLETCLRKRKLDRALAIVREGVTAHLLGVRHANAVLDALGKSGRVAEAQKLFEQFDHPLALRRDVATHSIMVSTYGK 452          
BLAST of Gchil1936.t1 vs. uniprot
Match: A0A5J4YX80_PORPP (Pentatricopeptide repeat-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YX80_PORPP)

HSP 1 Score: 64.7 bits (156), Expect = 5.090e-7
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0
Query:  133 APAAHLP-TSDPHVVRQLENCLRRRKVDRARDILFENAPRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLLRDVASFSIMICAYGK 223
            A +AH+P  +   +  +LE+ LR R+V  A  +L E    RVF TRHYN++LDAL K  ++ +AE LF+         DVAS+SIMI  Y K
Sbjct:  242 ATSAHVPKATQRRLAARLESALRERRVADACALLHEYGSMRVFSTRHYNAVLDALCKGQKVAEAERLFSSLSSP----DVASYSIMISMYAK 329          
The following BLAST results are available for this feature:
BLAST of Gchil1936.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IES9_9FLOR2.410e-5562.62Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7QMM7_CHOCR7.650e-1762.50PPR_long domain-containing protein n=1 Tax=Chondru... [more]
A0A1X6NU58_PORUM1.190e-847.50Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A5J4YX80_PORPP5.090e-743.48Pentatricopeptide repeat-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 282..316
e-value: 2.4E-5
score: 22.2
coord: 213..246
e-value: 7.6E-8
score: 30.1
coord: 458..490
e-value: 2.1E-10
score: 38.1
coord: 352..386
e-value: 3.8E-7
score: 27.9
coord: 563..596
e-value: 8.8E-9
score: 33.0
coord: 247..281
e-value: 3.8E-6
score: 24.7
coord: 179..210
e-value: 2.6E-5
score: 22.1
coord: 422..449
e-value: 5.6E-5
score: 21.1
coord: 317..350
e-value: 6.1E-8
score: 30.4
coord: 528..562
e-value: 4.5E-5
score: 21.3
coord: 598..631
e-value: 7.2E-4
score: 17.6
coord: 493..527
e-value: 4.9E-8
score: 30.7
coord: 388..420
e-value: 2.5E-7
score: 28.5
coord: 633..663
e-value: 6.4E-5
score: 20.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 595..644
e-value: 1.1E-9
score: 38.3
coord: 179..221
e-value: 4.1E-7
score: 30.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 302..362
e-value: 5.3E-16
score: 58.4
coord: 236..294
e-value: 5.3E-13
score: 48.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 388..417
e-value: 1.2E-4
score: 22.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 526..560
score: 11.147699
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 631..665
score: 10.917512
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 280..314
score: 11.695765
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 315..349
score: 11.860184
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 385..419
score: 12.024604
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 491..525
score: 10.939435
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..279
score: 11.553267
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 561..595
score: 12.901507
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 456..490
score: 13.920909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 420..450
score: 9.141782
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 210..244
score: 11.32308
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 350..384
score: 10.64348
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 596..630
score: 8.834866
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 175..209
score: 8.988323
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 426..588
e-value: 3.5E-18
score: 65.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 326..431
e-value: 2.1E-33
score: 117.2
coord: 432..537
e-value: 2.8E-34
score: 120.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 538..713
e-value: 8.4E-40
score: 139.0
coord: 143..312
e-value: 3.0E-39
score: 137.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 281..599
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 408..581
coord: 360..501
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 493..690
coord: 176..358
coord: 318..447
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 176..358
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 408..581
coord: 360..501
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 493..690
coord: 318..447

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1236315..1238486 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1936.t1Gchil1936.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1236315..1238486 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1936.t1 ID=Gchil1936.t1|Name=Gchil1936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=724bp
MFPPRPSQPAFLPPPALVRSHAAAQPAAQPPPRPAFPTAARALDRAVAAA
WGAPVTLHPVQSIWASTGVWTADDPKRRRRDARTVPPADAVLCPTAAAAT
AAHPDRPAAPSVVCAVTAAKAPTPLVPVQPAAAPAAHLPTSDPHVVRQLE
NCLRRRKVDRARDILFENAPRRVFRTRHYNSLLDALVKANRLHDAEMLFA
EFDRNGLLRDVASFSIMICAYGKSGRVAHAEKCMNRMRLQGVQPNAFSYS
ALIEAFGRVGNLPKAEGALREMINDGVQPNVVAYNALMKVYVKRARKADA
FRLLEEMERTGRKPDVITYGTLIDACAKTRDVDRAFEVFHRLQHNHIEPN
RVCYASLIDACSKARQPHRAFQVLASMKANNIHPDIFAYNALIDACGRVK
LVERAFEVYQDILNSGLRPDKVTFNALISACGRARDLSRAFEALESMTNT
YNYTPDRHTYNSLIDACGKSERLDKAFDVFNRMVASGIKPCAVSYNALID
ACGRTKNLELAYKLSNQMRNENIKPDVYTLNTLVAVCGRCGDIERSFTVL
SELREFGVRPDEVTYNTLIDALGRQGELTRAWSLLEEMIAMRVRPTRVTF
NAFACACAKTRDGQLALQLYGVMKKQRVDPDPVSYSALIDACCRSSMAVD
AIPIFDEMKDRRIDTWENVGVTLTASCFNGGSIRSAYQVFMSLTPKAQSR
VEERVRSALCNLPIVSSATPVVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf