Gchil1936.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1936.t1
Unique NameGchil1936.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length724
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1236315..1238486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1936Gchil1936Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1236315..1238486 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1936.t1.stop1Gchil1936.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1236315..1236317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1936.t1.CDS1Gchil1936.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1236315..1238486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1936.t1.exon1Gchil1936.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1236315..1238486 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1936.t1.start1Gchil1936.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1238484..1238486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1936.t1Gchil1936.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1236315..1238486 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1936.t1 ID=Gchil1936.t1|Name=Gchil1936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=724bp
MFPPRPSQPAFLPPPALVRSHAAAQPAAQPPPRPAFPTAARALDRAVAAA
WGAPVTLHPVQSIWASTGVWTADDPKRRRRDARTVPPADAVLCPTAAAAT
AAHPDRPAAPSVVCAVTAAKAPTPLVPVQPAAAPAAHLPTSDPHVVRQLE
NCLRRRKVDRARDILFENAPRRVFRTRHYNSLLDALVKANRLHDAEMLFA
EFDRNGLLRDVASFSIMICAYGKSGRVAHAEKCMNRMRLQGVQPNAFSYS
ALIEAFGRVGNLPKAEGALREMINDGVQPNVVAYNALMKVYVKRARKADA
FRLLEEMERTGRKPDVITYGTLIDACAKTRDVDRAFEVFHRLQHNHIEPN
RVCYASLIDACSKARQPHRAFQVLASMKANNIHPDIFAYNALIDACGRVK
LVERAFEVYQDILNSGLRPDKVTFNALISACGRARDLSRAFEALESMTNT
YNYTPDRHTYNSLIDACGKSERLDKAFDVFNRMVASGIKPCAVSYNALID
ACGRTKNLELAYKLSNQMRNENIKPDVYTLNTLVAVCGRCGDIERSFTVL
SELREFGVRPDEVTYNTLIDALGRQGELTRAWSLLEEMIAMRVRPTRVTF
NAFACACAKTRDGQLALQLYGVMKKQRVDPDPVSYSALIDACCRSSMAVD
AIPIFDEMKDRRIDTWENVGVTLTASCFNGGSIRSAYQVFMSLTPKAQSR
VEERVRSALCNLPIVSSATPVVS*
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spliced messenger RNA

>Gchil1936.t1 ID=Gchil1936.t1|Name=Gchil1936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at tig00004439_pilon:1236315..1238486- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCGCCGCGTCCGTCGCAGCCCGCGTTTCTGCCGCCGCCGGCGCT
GGTGCGCAGCCACGCCGCCGCCCAGCCGGCCGCCCAGCCCCCGCCGCGTC
CCGCCTTCCCCACTGCCGCCCGCGCCCTGGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCACCCCGTCCAGTCAATCTGGGCGAGCAC
CGGCGTGTGGACCGCCGACGACCCCAAGCGTCGTCGTCGCGACGCCCGCA
CTGTCCCGCCCGCCGACGCTGTCCTCTGTCCCACCGCCGCCGCCGCCACC
GCCGCTCACCCCGACCGTCCCGCCGCGCCCTCCGTCGTTTGTGCTGTTAC
TGCCGCTAAAGCCCCGACCCCGCTTGTGCCAGTGCAACCTGCCGCCGCAC
CTGCTGCCCACCTGCCCACCTCGGACCCTCACGTTGTGCGCCAGTTGGAA
AACTGTTTGCGCCGCCGTAAGGTCGATCGCGCCCGCGACATTCTCTTTGA
GAATGCTCCGCGTCGTGTCTTTCGCACCCGCCACTACAACTCGCTGCTGG
ACGCCCTCGTCAAGGCCAACCGCTTGCATGACGCCGAGATGCTCTTCGCC
GAATTTGATCGAAACGGTCTCCTCAGAGACGTGGCCTCCTTCTCCATCAT
GATATGTGCCTACGGCAAGAGTGGTCGCGTCGCCCACGCTGAAAAGTGCA
TGAATCGCATGCGTCTGCAGGGCGTCCAGCCCAACGCCTTCTCGTACTCG
GCTCTCATTGAGGCCTTTGGACGCGTGGGCAACCTGCCAAAGGCAGAGGG
CGCCCTGCGCGAGATGATCAACGACGGCGTCCAGCCCAACGTTGTTGCCT
ACAACGCCCTCATGAAGGTCTACGTCAAGCGCGCCCGCAAGGCCGACGCC
TTTCGACTCCTGGAGGAAATGGAGCGCACTGGACGCAAGCCGGACGTCAT
TACCTACGGAACGCTCATTGACGCCTGCGCCAAGACACGCGACGTTGATC
GCGCCTTTGAGGTCTTCCACCGTTTACAGCACAACCACATTGAGCCCAAT
CGCGTCTGCTACGCCTCCCTTATCGACGCTTGCTCCAAGGCCAGACAGCC
GCATCGTGCCTTCCAGGTGCTGGCTAGCATGAAGGCCAACAACATTCACC
CGGATATTTTTGCTTACAACGCTTTGATCGATGCGTGCGGCAGAGTCAAG
CTCGTGGAACGCGCCTTTGAAGTGTATCAGGACATTTTGAACTCCGGCCT
GCGCCCGGACAAGGTTACTTTCAATGCCTTGATTTCGGCCTGTGGTCGAG
CCCGCGACTTATCCAGGGCATTTGAGGCCTTGGAATCCATGACTAACACC
TACAACTACACCCCTGACCGACACACGTACAACTCGCTCATAGATGCCTG
TGGAAAGTCCGAGCGACTGGACAAGGCCTTTGATGTGTTCAACCGAATGG
TGGCCTCCGGAATCAAGCCGTGTGCAGTGTCGTACAACGCTTTGATCGAT
GCCTGCGGACGTACCAAGAATCTCGAGCTGGCTTACAAGCTGTCCAACCA
AATGCGCAACGAAAATATCAAGCCCGATGTATATACGCTCAACACCTTGG
TTGCCGTGTGTGGTCGCTGCGGTGACATTGAACGTTCGTTTACAGTGTTG
TCAGAGCTCCGCGAGTTTGGAGTTCGCCCCGACGAGGTTACGTATAATAC
CCTCATCGACGCCCTTGGCAGACAAGGCGAGCTCACCCGCGCCTGGTCTC
TTTTGGAAGAAATGATTGCCATGCGCGTGCGACCTACTCGCGTCACTTTT
AATGCATTCGCGTGTGCGTGTGCCAAGACAAGAGACGGCCAGCTTGCCCT
GCAGCTGTACGGTGTGATGAAAAAGCAACGAGTTGACCCCGATCCCGTCT
CGTACTCGGCGCTGATTGACGCTTGCTGTCGCAGCTCCATGGCCGTGGAC
GCCATACCAATATTTGATGAGATGAAGGATCGTCGCATTGATACGTGGGA
AAATGTTGGTGTCACGCTCACTGCTTCCTGTTTTAACGGCGGTAGCATCC
GAAGTGCTTATCAGGTGTTCATGTCCCTCACGCCCAAGGCACAGTCAAGG
GTGGAGGAGCGAGTGCGCTCGGCGCTTTGCAACCTGCCCATTGTCTCAAG
TGCAACACCTGTTGTCTCATGA
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protein sequence of Gchil1936.t1

>Gchil1936.t1 ID=Gchil1936.t1|Name=Gchil1936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=724bp
MFPPRPSQPAFLPPPALVRSHAAAQPAAQPPPRPAFPTAARALDRAVAAA
WGAPVTLHPVQSIWASTGVWTADDPKRRRRDARTVPPADAVLCPTAAAAT
AAHPDRPAAPSVVCAVTAAKAPTPLVPVQPAAAPAAHLPTSDPHVVRQLE
NCLRRRKVDRARDILFENAPRRVFRTRHYNSLLDALVKANRLHDAEMLFA
EFDRNGLLRDVASFSIMICAYGKSGRVAHAEKCMNRMRLQGVQPNAFSYS
ALIEAFGRVGNLPKAEGALREMINDGVQPNVVAYNALMKVYVKRARKADA
FRLLEEMERTGRKPDVITYGTLIDACAKTRDVDRAFEVFHRLQHNHIEPN
RVCYASLIDACSKARQPHRAFQVLASMKANNIHPDIFAYNALIDACGRVK
LVERAFEVYQDILNSGLRPDKVTFNALISACGRARDLSRAFEALESMTNT
YNYTPDRHTYNSLIDACGKSERLDKAFDVFNRMVASGIKPCAVSYNALID
ACGRTKNLELAYKLSNQMRNENIKPDVYTLNTLVAVCGRCGDIERSFTVL
SELREFGVRPDEVTYNTLIDALGRQGELTRAWSLLEEMIAMRVRPTRVTF
NAFACACAKTRDGQLALQLYGVMKKQRVDPDPVSYSALIDACCRSSMAVD
AIPIFDEMKDRRIDTWENVGVTLTASCFNGGSIRSAYQVFMSLTPKAQSR
VEERVRSALCNLPIVSSATPVVS*
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mRNA from alignment at tig00004439_pilon:1236315..1238486-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1936.t1 ID=Gchil1936.t1|Name=Gchil1936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at tig00004439_pilon:1236315..1238486- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCCGCCGCGTCCGTCGCAGCCCGCGTTTCTGCCGCCGCCGGCGCT
GGTGCGCAGCCACGCCGCCGCCCAGCCGGCCGCCCAGCCCCCGCCGCGTC
CCGCCTTCCCCACTGCCGCCCGCGCCCTGGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCACCCCGTCCAGTCAATCTGGGCGAGCAC
CGGCGTGTGGACCGCCGACGACCCCAAGCGTCGTCGTCGCGACGCCCGCA
CTGTCCCGCCCGCCGACGCTGTCCTCTGTCCCACCGCCGCCGCCGCCACC
GCCGCTCACCCCGACCGTCCCGCCGCGCCCTCCGTCGTTTGTGCTGTTAC
TGCCGCTAAAGCCCCGACCCCGCTTGTGCCAGTGCAACCTGCCGCCGCAC
CTGCTGCCCACCTGCCCACCTCGGACCCTCACGTTGTGCGCCAGTTGGAA
AACTGTTTGCGCCGCCGTAAGGTCGATCGCGCCCGCGACATTCTCTTTGA
GAATGCTCCGCGTCGTGTCTTTCGCACCCGCCACTACAACTCGCTGCTGG
ACGCCCTCGTCAAGGCCAACCGCTTGCATGACGCCGAGATGCTCTTCGCC
GAATTTGATCGAAACGGTCTCCTCAGAGACGTGGCCTCCTTCTCCATCAT
GATATGTGCCTACGGCAAGAGTGGTCGCGTCGCCCACGCTGAAAAGTGCA
TGAATCGCATGCGTCTGCAGGGCGTCCAGCCCAACGCCTTCTCGTACTCG
GCTCTCATTGAGGCCTTTGGACGCGTGGGCAACCTGCCAAAGGCAGAGGG
CGCCCTGCGCGAGATGATCAACGACGGCGTCCAGCCCAACGTTGTTGCCT
ACAACGCCCTCATGAAGGTCTACGTCAAGCGCGCCCGCAAGGCCGACGCC
TTTCGACTCCTGGAGGAAATGGAGCGCACTGGACGCAAGCCGGACGTCAT
TACCTACGGAACGCTCATTGACGCCTGCGCCAAGACACGCGACGTTGATC
GCGCCTTTGAGGTCTTCCACCGTTTACAGCACAACCACATTGAGCCCAAT
CGCGTCTGCTACGCCTCCCTTATCGACGCTTGCTCCAAGGCCAGACAGCC
GCATCGTGCCTTCCAGGTGCTGGCTAGCATGAAGGCCAACAACATTCACC
CGGATATTTTTGCTTACAACGCTTTGATCGATGCGTGCGGCAGAGTCAAG
CTCGTGGAACGCGCCTTTGAAGTGTATCAGGACATTTTGAACTCCGGCCT
GCGCCCGGACAAGGTTACTTTCAATGCCTTGATTTCGGCCTGTGGTCGAG
CCCGCGACTTATCCAGGGCATTTGAGGCCTTGGAATCCATGACTAACACC
TACAACTACACCCCTGACCGACACACGTACAACTCGCTCATAGATGCCTG
TGGAAAGTCCGAGCGACTGGACAAGGCCTTTGATGTGTTCAACCGAATGG
TGGCCTCCGGAATCAAGCCGTGTGCAGTGTCGTACAACGCTTTGATCGAT
GCCTGCGGACGTACCAAGAATCTCGAGCTGGCTTACAAGCTGTCCAACCA
AATGCGCAACGAAAATATCAAGCCCGATGTATATACGCTCAACACCTTGG
TTGCCGTGTGTGGTCGCTGCGGTGACATTGAACGTTCGTTTACAGTGTTG
TCAGAGCTCCGCGAGTTTGGAGTTCGCCCCGACGAGGTTACGTATAATAC
CCTCATCGACGCCCTTGGCAGACAAGGCGAGCTCACCCGCGCCTGGTCTC
TTTTGGAAGAAATGATTGCCATGCGCGTGCGACCTACTCGCGTCACTTTT
AATGCATTCGCGTGTGCGTGTGCCAAGACAAGAGACGGCCAGCTTGCCCT
GCAGCTGTACGGTGTGATGAAAAAGCAACGAGTTGACCCCGATCCCGTCT
CGTACTCGGCGCTGATTGACGCTTGCTGTCGCAGCTCCATGGCCGTGGAC
GCCATACCAATATTTGATGAGATGAAGGATCGTCGCATTGATACGTGGGA
AAATGTTGGTGTCACGCTCACTGCTTCCTGTTTTAACGGCGGTAGCATCC
GAAGTGCTTATCAGGTGTTCATGTCCCTCACGCCCAAGGCACAGTCAAGG
GTGGAGGAGCGAGTGCGCTCGGCGCTTTGCAACCTGCCCATTGTCTCAAG
TGCAACACCTGTTGTCTCATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1236315..1238486-

>Gchil1936.t1 ID=Gchil1936.t1|Name=Gchil1936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2172bp|location=Sequence derived from alignment at tig00004439_pilon:1236315..1238486- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCCGCCGCGTCCGTCGCAGCCCGCGTTTCTGCCGCCGCCGGCGCT
GGTGCGCAGCCACGCCGCCGCCCAGCCGGCCGCCCAGCCCCCGCCGCGTC
CCGCCTTCCCCACTGCCGCCCGCGCCCTGGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCACCCCGTCCAGTCAATCTGGGCGAGCAC
CGGCGTGTGGACCGCCGACGACCCCAAGCGTCGTCGTCGCGACGCCCGCA
CTGTCCCGCCCGCCGACGCTGTCCTCTGTCCCACCGCCGCCGCCGCCACC
GCCGCTCACCCCGACCGTCCCGCCGCGCCCTCCGTCGTTTGTGCTGTTAC
TGCCGCTAAAGCCCCGACCCCGCTTGTGCCAGTGCAACCTGCCGCCGCAC
CTGCTGCCCACCTGCCCACCTCGGACCCTCACGTTGTGCGCCAGTTGGAA
AACTGTTTGCGCCGCCGTAAGGTCGATCGCGCCCGCGACATTCTCTTTGA
GAATGCTCCGCGTCGTGTCTTTCGCACCCGCCACTACAACTCGCTGCTGG
ACGCCCTCGTCAAGGCCAACCGCTTGCATGACGCCGAGATGCTCTTCGCC
GAATTTGATCGAAACGGTCTCCTCAGAGACGTGGCCTCCTTCTCCATCAT
GATATGTGCCTACGGCAAGAGTGGTCGCGTCGCCCACGCTGAAAAGTGCA
TGAATCGCATGCGTCTGCAGGGCGTCCAGCCCAACGCCTTCTCGTACTCG
GCTCTCATTGAGGCCTTTGGACGCGTGGGCAACCTGCCAAAGGCAGAGGG
CGCCCTGCGCGAGATGATCAACGACGGCGTCCAGCCCAACGTTGTTGCCT
ACAACGCCCTCATGAAGGTCTACGTCAAGCGCGCCCGCAAGGCCGACGCC
TTTCGACTCCTGGAGGAAATGGAGCGCACTGGACGCAAGCCGGACGTCAT
TACCTACGGAACGCTCATTGACGCCTGCGCCAAGACACGCGACGTTGATC
GCGCCTTTGAGGTCTTCCACCGTTTACAGCACAACCACATTGAGCCCAAT
CGCGTCTGCTACGCCTCCCTTATCGACGCTTGCTCCAAGGCCAGACAGCC
GCATCGTGCCTTCCAGGTGCTGGCTAGCATGAAGGCCAACAACATTCACC
CGGATATTTTTGCTTACAACGCTTTGATCGATGCGTGCGGCAGAGTCAAG
CTCGTGGAACGCGCCTTTGAAGTGTATCAGGACATTTTGAACTCCGGCCT
GCGCCCGGACAAGGTTACTTTCAATGCCTTGATTTCGGCCTGTGGTCGAG
CCCGCGACTTATCCAGGGCATTTGAGGCCTTGGAATCCATGACTAACACC
TACAACTACACCCCTGACCGACACACGTACAACTCGCTCATAGATGCCTG
TGGAAAGTCCGAGCGACTGGACAAGGCCTTTGATGTGTTCAACCGAATGG
TGGCCTCCGGAATCAAGCCGTGTGCAGTGTCGTACAACGCTTTGATCGAT
GCCTGCGGACGTACCAAGAATCTCGAGCTGGCTTACAAGCTGTCCAACCA
AATGCGCAACGAAAATATCAAGCCCGATGTATATACGCTCAACACCTTGG
TTGCCGTGTGTGGTCGCTGCGGTGACATTGAACGTTCGTTTACAGTGTTG
TCAGAGCTCCGCGAGTTTGGAGTTCGCCCCGACGAGGTTACGTATAATAC
CCTCATCGACGCCCTTGGCAGACAAGGCGAGCTCACCCGCGCCTGGTCTC
TTTTGGAAGAAATGATTGCCATGCGCGTGCGACCTACTCGCGTCACTTTT
AATGCATTCGCGTGTGCGTGTGCCAAGACAAGAGACGGCCAGCTTGCCCT
GCAGCTGTACGGTGTGATGAAAAAGCAACGAGTTGACCCCGATCCCGTCT
CGTACTCGGCGCTGATTGACGCTTGCTGTCGCAGCTCCATGGCCGTGGAC
GCCATACCAATATTTGATGAGATGAAGGATCGTCGCATTGATACGTGGGA
AAATGTTGGTGTCACGCTCACTGCTTCCTGTTTTAACGGCGGTAGCATCC
GAAGTGCTTATCAGGTGTTCATGTCCCTCACGCCCAAGGCACAGTCAAGG
GTGGAGGAGCGAGTGCGCTCGGCGCTTTGCAACCTGCCCATTGTCTCAAG
TGCAACACCTGTTGTCTCATGA
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