Gchil1933.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1933.t1
Unique NameGchil1933.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length244
Homology
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A2V3ILC2_9FLOR (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC2_9FLOR)

HSP 1 Score: 333 bits (854), Expect = 2.770e-113
Identity = 163/207 (78.74%), Postives = 181/207 (87.44%), Query Frame = 0
Query:    1 MVASSSNMDVEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSEREDTSIAQTGAEVLSSAEKSAIDSMLFDVLEKNRQIHAAHAEKM 207
            MVASSSNM VEETEDLTGVMWHDKNWLSFFPL+K++VLEYFS SQFYDERCNNQQIKLQ LD KLLE+M GIEYQVTAD APGLF+ITKFLRS+ P +LEPLAMYYVL+GDVYQAPS+HAILSSRILQ LHHLRKAFETMQNA+ VS QG Y WEP PV ++ERED    + G E+LS AE+S +D MLF+VLE+NRQIH AH EKM
Sbjct:    1 MVASSSNMAVEETEDLTGVMWHDKNWLSFFPLSKDNVLEYFSHSQFYDERCNNQQIKLQMLDNKLLESMAGIEYQVTADVAPGLFVITKFLRSLSPASLEPLAMYYVLDGDVYQAPSVHAILSSRILQCLHHLRKAFETMQNASTVSVQGQYWWEPSPVGVNEREDVGEGEGGTELLSGAERSGVDGMLFEVLERNRQIHGAHVEKM 207          
BLAST of Gchil1933.t1 vs. uniprot
Match: F4Q2D8_CAVFA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q2D8_CAVFA)

HSP 1 Score: 144 bits (362), Expect = 1.180e-38
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 0
Query:   12 ETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFE 138
            E EDLT +MW D  WL  FPL +  VL YFS+SQFYD++CNN+ +K+QRLDP  L+TM GIEYQV     P LF+I +  R   P +++   +YY++ G +YQAP + A+L+SR+ QSL+HLR+AF+
Sbjct:   19 EVEDLTQIMWRDPLWLQMFPLNQMTVLTYFSMSQFYDKQCNNEILKMQRLDPSALKTMVGIEYQVINYQEPSLFLIARQYRE-SPGDVKVQTLYYIINGSIYQAPDLKAVLTSRLTQSLYHLRQAFD 144          
BLAST of Gchil1933.t1 vs. uniprot
Match: D3AXU0_POLPP (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AXU0_POLPP)

HSP 1 Score: 140 bits (352), Expect = 2.200e-37
Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = 0
Query:   10 VEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFE 138
            ++E +DLT +MW D+ WLS FPL K  +L YFSLSQFYD++CNN+ +K+QRLDP  L+TM G+EY+V  D  P LFII K  R      +    +YYV+ G +YQ+P I  +L SR++QSL HL  AFE
Sbjct:   16 IDEEQDLTQIMWRDQVWLSQFPLNKMTILNYFSLSQFYDKQCNNEILKMQRLDPSALKTMVGLEYEVVVDKEPLLFIIAKQNRLTANDAITQ-TLYYVINGSIYQSPDIKNVLESRMIQSLFHLINAFE 143          
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A7S3EG92_9RHOD (Mediator of RNA polymerase II transcription subunit 6 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG92_9RHOD)

HSP 1 Score: 136 bits (342), Expect = 1.340e-35
Identity = 79/214 (36.92%), Postives = 117/214 (54.67%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPA--PGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAV-------------------------SNQGN-YSWEPPPVSLSEREDTSIAQTGAEVLSSAEKSAIDSMLFDVLEKNRQI 199
            E LT + W+DK WLS+FPL K+ VLEYF+ S FY+  C N+Q K+QRL+    E +PGI Y+V  D    P LF+I K  R+     +  LA YY++ G  Y++P  H++L++RI+QS++HLR AF+ +Q                              S QG+ YSW+P   S S+  D       A V    E+  +D +L+ +LE+NR++
Sbjct:    4 ESLTSLSWNDKVWLSYFPLDKDTVLEYFARSPFYNRSCLNEQYKMQRLEISAFENVPGILYEVVHDLTNEPLLFVIAKLERAENL-TVRTLAYYYIMNGVAYESPKAHSVLTTRIVQSMYHLRNAFDALQEKVGSHTCLLLRIVIPRRKPPDIQCSVQIPSEQGDWYSWKPSYGSSSDAGDDKDESEAAIV----ERQTVDRLLYGILERNRRV 212          
BLAST of Gchil1933.t1 vs. uniprot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MED6_DICDI)

HSP 1 Score: 134 bits (338), Expect = 6.610e-35
Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 0
Query:    1 MVASSSNMDV-EETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSER 164
            M++ +S   + EE  DLT VMW D  WL  +PL  + +L+YFS SQFYD+ CNN+Q+K+QRLD   L+ M G+EY++     P  F+I K  R I P ++    +YYV+ G++YQAP +H +  SR+ QS+ HL +AF ++ +         YS    P +  E+
Sbjct:   50 MISDTSTPRILEEEPDLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQRLDLSALKNMDGLEYELIKFVEPSFFLIAKQTR-ISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDPSNQQEK 213          
BLAST of Gchil1933.t1 vs. uniprot
Match: F0ZNV8_DICPU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNV8_DICPU)

HSP 1 Score: 134 bits (338), Expect = 7.660e-35
Identity = 68/159 (42.77%), Postives = 95/159 (59.75%), Query Frame = 0
Query:   10 VEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSEREDTS 168
            +EE  D T VMW D  WL  FPL +  VL YFS SQFYD+ CNN+ +K+QRLDP  L+TM G+EY+V     P  ++I K  R I P ++    +YYV+ G++YQAP +  + +SRI QSL HL +AF  + +         YS+   P +  E++  S
Sbjct:   67 LEEEPDFTQVMWRDPVWLQMFPLNQHTVLTYFSYSQFYDKNCNNETLKMQRLDPAALKTMEGLEYEVAKFVEPSFYLIAKQNR-ISPSDVIIQQLYYVINGNIYQAPDLRQVFTSRISQSLFHLSEAFNKISSIINWDIINGYSFNFDPSNQQEKQKLS 224          
BLAST of Gchil1933.t1 vs. uniprot
Match: UPI000644C0CC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C0CC)

HSP 1 Score: 133 bits (334), Expect = 8.840e-35
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETM 140
            EDLT +MW D  WL   PL K+ VL YFS+SQFYD++CNN+ +K+QRLDP  L+TM GIEY+V     P LF++ K  R + P +     +YY++ G +YQ+P I ++  SR++QSL HL  AFE +
Sbjct:   26 EDLTQIMWRDPVWLQQIPLNKQTVLLYFSMSQFYDKQCNNEILKMQRLDPSALKTMIGIEYEVVMAQEPMLFLVAKQSR-VSPTDASVQTLYYIINGTIYQSPDIRSVFESRMVQSLFHLIHAFEKL 151          
BLAST of Gchil1933.t1 vs. uniprot
Match: M2XHR9_GALSU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHR9_GALSU)

HSP 1 Score: 125 bits (313), Expect = 4.630e-32
Identity = 59/134 (44.03%), Postives = 90/134 (67.16%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVS 147
            EDL  + W D  +L+ FPLT+E VL+YFS S FYD  CNN+QI++Q+LDP++L  + G EY VT    P  F++ K  R  R    + L ++Y+++G VYQAPS+ ++L SR+ +S  H+ ++FE++Q A+  S
Sbjct:   10 EDLAHLSWRDNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDPEVLYNLVGTEYMVTNQQEPVFFVVEKVYRYNRE-ETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFHISESFESLQQASLFS 142          
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A8J4Q4B9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q4B9_9MYCE)

HSP 1 Score: 125 bits (315), Expect = 1.230e-31
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 0
Query:   11 EETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSER 164
            +E  DLT VMW D  WL  FPL  + VL YF  SQFYD+ CNN+ +K+QRL+   L+TM GIEY++     PG ++I K  R + P +     +YYV+ G++YQ+P + ++ +SRI QSL+HL +AF  + +         YS    P    E+
Sbjct:   26 KEEPDLTQVMWRDPLWLQMFPLNAQTVLSYFYYSQFYDKSCNNEILKMQRLELSSLKTMIGIEYELAHFVEPGFYVIAKQNR-VSPTDAVIQTLYYVINGNIYQSPYLRSVFTSRISQSLYHLSEAFSNISSTINWDITSGYSMNLDPNKQQEK 178          
BLAST of Gchil1933.t1 vs. uniprot
Match: A0A1Y1HUV0_KLENI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUV0_KLENI)

HSP 1 Score: 122 bits (307), Expect = 7.280e-31
Identity = 75/186 (40.32%), Postives = 106/186 (56.99%), Query Frame = 0
Query:   15 DLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDERCNNQQIKLQRLDPKLLETMP-GIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQGNYSWEPPPVSLSEREDTSIAQTGA----EVLSSAEKSAIDSMLFDVLEK 195
            DLTGV++ D  WL  FPL +  VL+YF+LS FYD  CNN+++K Q  D  LL TMP G EY V +   P L++I K LR + P  + PLA YYVL+G +YQAP + A+L SR  +SL++++  F       A      +  E       E  DT+++Q  A    E +  AE   +D ++  VL+K
Sbjct:    7 DLTGVLFSDPLWLQSFPLNRATVLDYFALSPFYDASCNNEKLKAQGKDLSLLSTMPYGPEYVVISAQEPNLYVIRKQLR-VSPDKMVPLAAYYVLDGSIYQAPHLQAVLGSRAERSLYYVQSGF-----GKAAMKLKEHLREDE-----ETRDTAVSQARAVPEIEPVDRAEAFYMDQIITSVLKK 181          
The following BLAST results are available for this feature:
BLAST of Gchil1933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILC2_9FLOR2.770e-11378.74Mediator of RNA polymerase II transcription subuni... [more]
F4Q2D8_CAVFA1.180e-3851.97Mediator of RNA polymerase II transcription subuni... [more]
D3AXU0_POLPP2.200e-3751.94Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3EG92_9RHOD1.340e-3536.92Mediator of RNA polymerase II transcription subuni... [more]
MED6_DICDI6.610e-3540.00Putative mediator of RNA polymerase II transcripti... [more]
F0ZNV8_DICPU7.660e-3542.77Mediator of RNA polymerase II transcription subuni... [more]
UPI000644C0CC8.840e-3548.82hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
M2XHR9_GALSU4.630e-3244.03Mediator of RNA polymerase II transcription subuni... [more]
A0A8J4Q4B9_9MYCE1.230e-3140.91Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A1Y1HUV0_KLENI7.280e-3140.32Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 19..144
e-value: 7.5E-38
score: 129.3
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 8..220
IPR038566Mediator complex, subunit Med6 superfamilyGENE3D3.10.450.580Mediator complex, subunit Med6coord: 11..141
e-value: 2.9E-39
score: 136.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..243
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 8..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1228887..1229618 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1933.t1Gchil1933.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1228887..1229618 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1933.t1 ID=Gchil1933.t1|Name=Gchil1933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=244bp
MVASSSNMDVEETEDLTGVMWHDKNWLSFFPLTKEHVLEYFSLSQFYDER
CNNQQIKLQRLDPKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLE
PLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQNATAVSNQG
NYSWEPPPVSLSEREDTSIAQTGAEVLSSAEKSAIDSMLFDVLEKNRQIH
AAHAEKMSTQVEKREDEVVNAPTASASATATATGTSHNASTAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007018Mediator_Med6
IPR038566Mediator_Med6_sf