Gchil1928.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1928.t1
Unique NameGchil1928.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Homology
BLAST of Gchil1928.t1 vs. uniprot
Match: A0A2V3IKS1_9FLOR (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKS1_9FLOR)

HSP 1 Score: 318 bits (816), Expect = 3.710e-107
Identity = 161/257 (62.65%), Postives = 193/257 (75.10%), Query Frame = 0
Query:    1 MSQPAAKPHQVSQFPLPPRRYYQSIASHPMHPPPLPSSNDSYHMFGRVYSTEHIVPSLEHAGRKRLYDPSAPPCHELRSMNSSLLQLFLKLVEQLCHPIAHESPVQPHQHIIQQIEDTFVNMQHLINVMRPAQAAMDLKTLLDNQTRSRKQTTDNLHKSVKKAWDLIAEAADEVTQPSYQLSPPAAAYLQSLQQPQTQ-----HHPSQPQAPQPPTTRNTDLHCIFDDMMPALPAPPPTPATDLLRNVNLIVNDPNL 252
            M+  +AKP QVSQFPLPPRRYYQSI++ P+HPP    +N SY MFGRVY+T+ ++P+LEHAGRKRLYDP+  PC ELR++N+SLL+LFL LV+QLC P+ HESP  PH+ II +IEDTF+NMQHLIN MRPAQAAMDLK LLDNQT SRKQ TDNL  SVK AWDLIA+AAD+++QPSYQLS  A  Y+Q LQ P  Q     HH       QP    N     +FDD+MPA PAPP  PAT+LL+N+  I+N P L
Sbjct:    1 MAHQSAKPQQVSQFPLPPRRYYQSISTQPLHPPXXXXANHSYSMFGRVYTTDDVLPTLEHAGRKRLYDPAGSPCSELRTLNNSLLELFLNLVDQLCDPLTHESPSDPHKQIIDRIEDTFINMQHLINTMRPAQAAMDLKALLDNQTASRKQITDNLKDSVKTAWDLIADAADKLSQPSYQLSETATTYMQRLQNPNQQPPMETHH-------QPNKVHNGTASTLFDDLMPASPAPPKPPATELLQNITHIMNHPTL 250          
BLAST of Gchil1928.t1 vs. uniprot
Match: A0A6J2TZK7_DROLE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2TZK7_DROLE)

HSP 1 Score: 69.7 bits (169), Expect = 1.660e-10
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 0
Query:   10 QVSQFPLPPRRYYQSIASHP----MHPPPL--PSSNDSYHMFGRVYSTEHIVPSLEHAGRKRLYDPSAPPCHELRSMNSSLLQLFLKLVEQLC----HPIAHESPVQPHQHIIQQIEDTFVNMQHLINVMRPAQAAMDLKTLLDNQTRSRKQTTDNLHKSVKKAWDLI 167
            QVS  PLPP+ Y+++ ++      + PP    PS N +  +FG  +++  +V  LE    KR+         EL  +N SL+  FL L++ L     HP   E         +  I   FV M HLIN +RP QA   L+ +++ Q R R +T      ++K   D++
Sbjct:   40 QVSSLPLPPKEYFKNYSNKAVAKGLAPPXXXAPSDNQNITVFGIQHNSNELVCPLESQNIKRIVPVHFDRRKELTKLNHSLVVTFLDLLDTLIMCPEHPKRREK--------LDHINLLFVQMNHLINELRPHQARETLRVMMELQKRQRVETISRFQDNLKHVRDIL 199          
BLAST of Gchil1928.t1 vs. uniprot
Match: A0A0L8I8Q3_OCTBM (Uncharacterized protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8I8Q3_OCTBM)

HSP 1 Score: 65.1 bits (157), Expect = 2.240e-8
Identity = 49/163 (30.06%), Postives = 83/163 (50.92%), Query Frame = 0
Query:   11 VSQFPLPPRRYYQSIASHPMH---PPPLPSSNDSYHMFGRVYSTEHIVPSLEHAGRKRLYDPSAPPCHELRSMNSSLLQLFLKLVEQLCHPIAHESPVQPHQHIIQQIEDTFVNMQHLINVMRPAQAAMDLKTLLDNQTRSRKQTTDNLHKSVKKAWDLIAEA 170
            VS FPLPP +Y +      M    P P P+  D Y +FG   +    + +LE  G  +LY  +     E++ +N S+L  FL L++ L   I + S    ++ +   +   F+N+ HLIN +RP QA   L+ ++  Q     +  ++L K + +A +LIA++
Sbjct:    7 VSSFPLPPMQYVRYCTDENMAKGIPAPPPTQED-YTVFGVPSNINDPIQTLESQGLTQLYPENCNRKKEMKKLNHSILVCFLDLIDIL---IQNPSSSDRNEKL-NDLRLLFINLNHLINEIRPNQAREALRMMMMKQKCQTVELLNDLEKKLAEAKELIAKS 164          
BLAST of Gchil1928.t1 vs. uniprot
Match: A0A7E6FAD1_OCTVU (uncharacterized protein LOC118765816 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6FAD1_OCTVU)

HSP 1 Score: 62.0 bits (149), Expect = 2.360e-7
Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 0
Query:   11 VSQFPLPPRRYYQSIASHPMHP--PPLPSSNDSYHMFGRVYSTEHIVPSLEHAGRKRLYDPSAPPCHELRSMNSSLLQLFLKLVEQLC-HPIAHESPVQPHQHIIQQIEDTFVNMQHLINVMRPAQAAMDLKTLLDNQTRSRKQTTDNLHKSVKKAWDLIAEA 170
            VS FPLPP +Y +      M    P  P + ++Y +FG   +    + +LE  G  +LY  +     E++ +N S+L  FL L++ L  +P + +      Q  +  +   F+N+ HLIN +RP QA   L+ ++  Q     +  +   + + +A +LIA++
Sbjct:    7 VSSFPLPPMQYVRYCTDENMAKGIPAPPPTQENYTVFGVPSNINDPIQTLESLGLTQLYPENHNRKKEMKKLNHSILVCFLDLIDILIRNPNSSDR-----QEKLNDLRLLFINLNHLINEIRPNQARETLRMMMMKQKCQTVKLLNEFEEKLAEAKELIAKS 164          
The following BLAST results are available for this feature:
BLAST of Gchil1928.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IKS1_9FLOR3.710e-10762.65Mediator of RNA polymerase II transcription subuni... [more]
A0A6J2TZK7_DROLE1.660e-1030.36Mediator of RNA polymerase II transcription subuni... [more]
A0A0L8I8Q3_OCTBM2.240e-830.06Uncharacterized protein n=1 Tax=Octopus bimaculoid... [more]
A0A7E6FAD1_OCTVU2.360e-727.61uncharacterized protein LOC118765816 n=1 Tax=Octop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044888Mediator complex, subunit Med7 superfmailyGENE3D6.10.140.200coord: 70..168
e-value: 3.4E-19
score: 70.5
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 30..163
e-value: 1.3E-29
score: 103.7
IPR009244Mediator complex, subunit Med7PANTHERPTHR21428MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7coord: 6..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..201
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 71..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1207411..1208169 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1928.t1Gchil1928.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1207411..1208169 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1928.t1 ID=Gchil1928.t1|Name=Gchil1928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MSQPAAKPHQVSQFPLPPRRYYQSIASHPMHPPPLPSSNDSYHMFGRVYS
TEHIVPSLEHAGRKRLYDPSAPPCHELRSMNSSLLQLFLKLVEQLCHPIA
HESPVQPHQHIIQQIEDTFVNMQHLINVMRPAQAAMDLKTLLDNQTRSRK
QTTDNLHKSVKKAWDLIAEAADEVTQPSYQLSPPAAAYLQSLQQPQTQHH
PSQPQAPQPPTTRNTDLHCIFDDMMPALPAPPPTPATDLLRNVNLIVNDP
NL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044888Mediatior_Med7_sf
IPR009244Mediatior_Med7
IPR037212Med7/Med21-like