Gchil1928.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1928.t1
Unique NameGchil1928.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1207411..1208169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7159.AAEL000982-PA
Preferred nameMED7
PFAMsMed7
Max annot lvl33208|Metazoa
KEGG koko:K15148,ko:K20414
GOsGO:0000003,GO:0000151,GO:0000428,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue3.75e-18
EggNOG OGsKOG0570@1|root,KOG0570@2759|Eukaryota,38GTI@33154|Opisthokonta,3BJ8G@33208|Metazoa,3CW50@33213|Bilateria,41XPQ@6656|Arthropoda,3SGZJ@50557|Insecta,4528X@7147|Diptera,45HTG@7148|Nematocera
DescriptionComponent of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery
COG categoryK
BRITEko00000,ko03021,ko04090
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1928Gchil1928Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1207411..1208169 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1928.t1.stop1Gchil1928.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1207411..1207413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1928.t1.CDS1Gchil1928.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1207411..1208169 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1928.t1.exon1Gchil1928.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1207411..1208169 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1928.t1.start1Gchil1928.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1208167..1208169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1928.t1Gchil1928.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1207411..1208169 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1928.t1 ID=Gchil1928.t1|Name=Gchil1928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MSQPAAKPHQVSQFPLPPRRYYQSIASHPMHPPPLPSSNDSYHMFGRVYS
TEHIVPSLEHAGRKRLYDPSAPPCHELRSMNSSLLQLFLKLVEQLCHPIA
HESPVQPHQHIIQQIEDTFVNMQHLINVMRPAQAAMDLKTLLDNQTRSRK
QTTDNLHKSVKKAWDLIAEAADEVTQPSYQLSPPAAAYLQSLQQPQTQHH
PSQPQAPQPPTTRNTDLHCIFDDMMPALPAPPPTPATDLLRNVNLIVNDP
NL*
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spliced messenger RNA

>Gchil1928.t1 ID=Gchil1928.t1|Name=Gchil1928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004439_pilon:1207411..1208169- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACAGCCGGCCGCAAAGCCGCACCAGGTCTCCCAGTTCCCCCTCCC
GCCCCGGCGCTACTACCAATCCATCGCGTCACACCCCATGCATCCGCCAC
CGCTACCTTCTTCCAATGACTCTTATCACATGTTCGGCCGCGTCTACTCC
ACTGAACACATTGTACCTTCGTTGGAACACGCTGGAAGGAAGCGCCTTTA
CGATCCGTCCGCACCCCCCTGTCACGAGCTTCGATCCATGAACTCGTCCC
TGTTGCAGCTCTTTTTGAAGCTTGTTGAACAGCTTTGTCACCCCATTGCC
CACGAATCACCCGTGCAGCCACACCAGCATATTATCCAGCAGATTGAAGA
TACATTTGTCAACATGCAGCATCTCATTAATGTCATGCGCCCCGCACAGG
CTGCCATGGATCTCAAGACACTGCTCGACAATCAAACCCGCTCAAGAAAG
CAAACCACCGACAACTTGCACAAAAGCGTCAAGAAAGCCTGGGACCTCAT
CGCAGAAGCTGCAGATGAAGTCACGCAACCCAGTTACCAACTTTCACCAC
CTGCAGCCGCTTATCTACAATCCTTACAACAGCCCCAAACACAACACCAT
CCGTCACAACCACAGGCGCCACAACCGCCCACCACACGCAACACCGATCT
GCACTGTATTTTCGACGATATGATGCCTGCGTTACCTGCTCCACCACCCA
CCCCTGCTACCGACCTACTGCGCAACGTCAACCTCATTGTAAATGACCCC
AATTTGTAG
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protein sequence of Gchil1928.t1

>Gchil1928.t1 ID=Gchil1928.t1|Name=Gchil1928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MSQPAAKPHQVSQFPLPPRRYYQSIASHPMHPPPLPSSNDSYHMFGRVYS
TEHIVPSLEHAGRKRLYDPSAPPCHELRSMNSSLLQLFLKLVEQLCHPIA
HESPVQPHQHIIQQIEDTFVNMQHLINVMRPAQAAMDLKTLLDNQTRSRK
QTTDNLHKSVKKAWDLIAEAADEVTQPSYQLSPPAAAYLQSLQQPQTQHH
PSQPQAPQPPTTRNTDLHCIFDDMMPALPAPPPTPATDLLRNVNLIVNDP
NL*
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mRNA from alignment at tig00004439_pilon:1207411..1208169-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1928.t1 ID=Gchil1928.t1|Name=Gchil1928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004439_pilon:1207411..1208169- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACAGCCGGCCGCAAAGCCGCACCAGGTCTCCCAGTTCCCCCTCCC
GCCCCGGCGCTACTACCAATCCATCGCGTCACACCCCATGCATCCGCCAC
CGCTACCTTCTTCCAATGACTCTTATCACATGTTCGGCCGCGTCTACTCC
ACTGAACACATTGTACCTTCGTTGGAACACGCTGGAAGGAAGCGCCTTTA
CGATCCGTCCGCACCCCCCTGTCACGAGCTTCGATCCATGAACTCGTCCC
TGTTGCAGCTCTTTTTGAAGCTTGTTGAACAGCTTTGTCACCCCATTGCC
CACGAATCACCCGTGCAGCCACACCAGCATATTATCCAGCAGATTGAAGA
TACATTTGTCAACATGCAGCATCTCATTAATGTCATGCGCCCCGCACAGG
CTGCCATGGATCTCAAGACACTGCTCGACAATCAAACCCGCTCAAGAAAG
CAAACCACCGACAACTTGCACAAAAGCGTCAAGAAAGCCTGGGACCTCAT
CGCAGAAGCTGCAGATGAAGTCACGCAACCCAGTTACCAACTTTCACCAC
CTGCAGCCGCTTATCTACAATCCTTACAACAGCCCCAAACACAACACCAT
CCGTCACAACCACAGGCGCCACAACCGCCCACCACACGCAACACCGATCT
GCACTGTATTTTCGACGATATGATGCCTGCGTTACCTGCTCCACCACCCA
CCCCTGCTACCGACCTACTGCGCAACGTCAACCTCATTGTAAATGACCCC
AATTTGTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1207411..1208169-

>Gchil1928.t1 ID=Gchil1928.t1|Name=Gchil1928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00004439_pilon:1207411..1208169- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACAGCCGGCCGCAAAGCCGCACCAGGTCTCCCAGTTCCCCCTCCC
GCCCCGGCGCTACTACCAATCCATCGCGTCACACCCCATGCATCCGCCAC
CGCTACCTTCTTCCAATGACTCTTATCACATGTTCGGCCGCGTCTACTCC
ACTGAACACATTGTACCTTCGTTGGAACACGCTGGAAGGAAGCGCCTTTA
CGATCCGTCCGCACCCCCCTGTCACGAGCTTCGATCCATGAACTCGTCCC
TGTTGCAGCTCTTTTTGAAGCTTGTTGAACAGCTTTGTCACCCCATTGCC
CACGAATCACCCGTGCAGCCACACCAGCATATTATCCAGCAGATTGAAGA
TACATTTGTCAACATGCAGCATCTCATTAATGTCATGCGCCCCGCACAGG
CTGCCATGGATCTCAAGACACTGCTCGACAATCAAACCCGCTCAAGAAAG
CAAACCACCGACAACTTGCACAAAAGCGTCAAGAAAGCCTGGGACCTCAT
CGCAGAAGCTGCAGATGAAGTCACGCAACCCAGTTACCAACTTTCACCAC
CTGCAGCCGCTTATCTACAATCCTTACAACAGCCCCAAACACAACACCAT
CCGTCACAACCACAGGCGCCACAACCGCCCACCACACGCAACACCGATCT
GCACTGTATTTTCGACGATATGATGCCTGCGTTACCTGCTCCACCACCCA
CCCCTGCTACCGACCTACTGCGCAACGTCAACCTCATTGTAAATGACCCC
AATTTGTAG
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