Gchil1866.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1866.t1
Unique NameGchil1866.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Homology
BLAST of Gchil1866.t1 vs. uniprot
Match: A0A2V3IMC1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 77.4 bits (189), Expect = 3.570e-12
Identity = 75/296 (25.34%), Postives = 136/296 (45.95%), Query Frame = 0
Query:    1 MVIIALPSPLVSVILSVINCFAEFSLPSSAKALNSVFELFQLRRRNLLRIKSHVRRITILEFLFLLLFIVLEVLVSFYSFPARSARNGTDPCVSVGTSIGTGSERVKSPT---TQAQHIMISCSHIEGDSIFFRLGNYSLSSENKAVNCSDTPAFKFK-TNGEDKRLMKTNGSKISC-------VFRENEEHCFAAKKEENILWLTHSTYKSSLEQDEQYFFATEVFFPIDEDLELLSRRRADIWWDET---VYFRVEVLLDFVEGACVFRYPGKQATEIATPIAVILLGVWTFSL 282
            MV IAL +  VS+I+++I+   E    ++ + +NS+ E   L+++  LR++++  R  I+  +  LLF+ LE++VSF+S P +     ++PCVSV   +     R++ P     +A  I   C  + G+  + R+GN SLS     V CS   A+ +   +  + + +  + +++SC       VF +     F+     +I+    +  +S     E  F  TE+ F   E L + + R  D + ++       R  V L   +  C F       T +   +   LL  W  +L
Sbjct:    1 MVTIALKAQYVSLIITIISFICEVIFIAALQTVNSIRECQLLKQKKQLRVRNYRHRAKIIALISALLFLGLEIIVSFFSDPVQLELFQSEPCVSVDNVL-----RLQGPQGEFREADFIEGKCQTLRGNFNYVRVGNVSLSDGQ--VRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGETCVFVFEQQNSTYFSGALLPDIV----AELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVAL 285          
BLAST of Gchil1866.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 64.7 bits (156), Expect = 7.490e-8
Identity = 92/360 (25.56%), Postives = 153/360 (42.50%), Query Frame = 0
Query:    1 MVIIALPSPLVSVILSVINCFAEFSLPSSAKALNSVFELFQLRRRNLLRIKSHVRRITILEFLFLLLFIVLEVLVSFYSFPARSARNGTDPCVSVGTSIGTGSERVKSPTTQAQHIMISCSHIEGDSIFFRLGNYSLSSENKA-VNCSDTPAFKFKTNGEDKRLMKTNGSK---------ISCVFRE--------NEEHCFAAKK-EENILWLTHSTYKSSLEQDEQYFFATE-VFFPIDE-----DLELLSR---RRADIWWDETVY----FRVEVLLDFVEGACVFRYPGKQATEIATPIAVILLGVWTFSL---ASLIVSSPTVFCGFYRVSDISHLAARTTRLSNDELYPIPDPVI 325
            MV I L S  VS+I+++I+  AE  L  +    N   E   LR+   + ++ H  R   L  L +++FI LEV++SF+S PA   +  TD C++V        E     T     I+I C  I+ D    R GN+SL+   KA V C     +++  N +D +   TN ++         + C+            E  C A ++   N +  T+    +++ + E      + V  P  E     +   LSR   RR    +D+ V      R  V +      C F +  K  T +   +   ++  W  S    AS ++   ++   FY +SD  H A RT R  ++ +  + +PV+
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRI--DLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYP-NEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSI---FYDMSDPLHWAQRTYRHIDEPI--VGNPVV 352          
The following BLAST results are available for this feature:
BLAST of Gchil1866.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMC1_9FLOR3.570e-1225.34Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT05_9FLOR7.490e-825.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 288..359
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 266..287
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..55
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 79..265
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 266..288

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:545542..546621 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1866.t1Gchil1866.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 545542..546621 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1866.t1 ID=Gchil1866.t1|Name=Gchil1866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MVIIALPSPLVSVILSVINCFAEFSLPSSAKALNSVFELFQLRRRNLLRI
KSHVRRITILEFLFLLLFIVLEVLVSFYSFPARSARNGTDPCVSVGTSIG
TGSERVKSPTTQAQHIMISCSHIEGDSIFFRLGNYSLSSENKAVNCSDTP
AFKFKTNGEDKRLMKTNGSKISCVFRENEEHCFAAKKEENILWLTHSTYK
SSLEQDEQYFFATEVFFPIDEDLELLSRRRADIWWDETVYFRVEVLLDFV
EGACVFRYPGKQATEIATPIAVILLGVWTFSLASLIVSSPTVFCGFYRVS
DISHLAARTTRLSNDELYPIPDPVIHIRRVGELPEQFVMTNLRNLSSLRD
SDNDSINEE*
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