Gchil1866.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1866.t1
Unique NameGchil1866.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:545542..546621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1866Gchil1866Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 545542..546621 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1866.t1.stop1Gchil1866.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 545542..545544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1866.t1.CDS1Gchil1866.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 545542..546621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1866.t1.exon1Gchil1866.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 545542..546621 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1866.t1.start1Gchil1866.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 546619..546621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1866.t1Gchil1866.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 545542..546621 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1866.t1 ID=Gchil1866.t1|Name=Gchil1866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp
MVIIALPSPLVSVILSVINCFAEFSLPSSAKALNSVFELFQLRRRNLLRI
KSHVRRITILEFLFLLLFIVLEVLVSFYSFPARSARNGTDPCVSVGTSIG
TGSERVKSPTTQAQHIMISCSHIEGDSIFFRLGNYSLSSENKAVNCSDTP
AFKFKTNGEDKRLMKTNGSKISCVFRENEEHCFAAKKEENILWLTHSTYK
SSLEQDEQYFFATEVFFPIDEDLELLSRRRADIWWDETVYFRVEVLLDFV
EGACVFRYPGKQATEIATPIAVILLGVWTFSLASLIVSSPTVFCGFYRVS
DISHLAARTTRLSNDELYPIPDPVIHIRRVGELPEQFVMTNLRNLSSLRD
SDNDSINEE*
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spliced messenger RNA

>Gchil1866.t1 ID=Gchil1866.t1|Name=Gchil1866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004439_pilon:545542..546621- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATAATCGCACTACCGTCTCCACTTGTCAGCGTGATTCTATCGGT
GATAAACTGCTTTGCTGAATTCTCTTTGCCGAGCTCCGCGAAAGCACTCA
ACTCAGTCTTTGAACTTTTCCAACTTCGTCGCCGCAATCTTCTTCGTATT
AAAAGCCATGTACGCCGCATCACAATTTTGGAGTTTCTCTTTCTTCTACT
CTTCATTGTTCTCGAAGTCTTGGTTTCGTTTTATTCATTTCCAGCGCGAT
CAGCTCGCAATGGGACAGATCCATGCGTATCTGTGGGAACAAGCATTGGA
ACTGGATCGGAAAGGGTGAAGAGCCCCACAACCCAAGCCCAACATATTAT
GATTTCCTGCTCTCACATTGAAGGGGATTCTATTTTTTTTCGCCTAGGCA
ACTACAGTTTGAGCTCGGAGAACAAGGCGGTAAACTGCAGTGACACGCCG
GCTTTCAAGTTCAAGACCAATGGGGAAGATAAGAGGCTAATGAAAACGAA
CGGAAGCAAAATATCATGTGTATTCAGAGAAAATGAAGAGCATTGCTTTG
CAGCAAAGAAAGAGGAAAACATTTTGTGGCTAACACATTCCACATATAAG
AGTTCTCTTGAGCAGGACGAGCAGTATTTCTTCGCTACTGAGGTCTTCTT
TCCTATTGATGAGGACTTAGAATTGTTGTCCAGAAGGCGAGCAGATATAT
GGTGGGACGAAACAGTGTATTTTCGTGTAGAAGTGCTATTGGACTTTGTC
GAAGGGGCATGTGTGTTCAGATATCCGGGAAAACAAGCAACAGAGATTGC
CACTCCTATCGCTGTGATTCTATTGGGGGTCTGGACGTTTTCGCTTGCTT
CCCTCATTGTGAGCTCACCGACTGTTTTCTGTGGATTCTATAGAGTGAGC
GATATAAGTCACCTGGCCGCGCGAACAACTCGGCTTTCCAATGATGAATT
GTACCCCATACCTGACCCTGTTATCCATATCAGGCGTGTCGGAGAGCTGC
CTGAGCAATTTGTTATGACAAACCTGAGAAATCTAAGCAGTTTACGTGAC
TCCGATAACGATAGTATTAATGAAGAATGA
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protein sequence of Gchil1866.t1

>Gchil1866.t1 ID=Gchil1866.t1|Name=Gchil1866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MVIIALPSPLVSVILSVINCFAEFSLPSSAKALNSVFELFQLRRRNLLRI
KSHVRRITILEFLFLLLFIVLEVLVSFYSFPARSARNGTDPCVSVGTSIG
TGSERVKSPTTQAQHIMISCSHIEGDSIFFRLGNYSLSSENKAVNCSDTP
AFKFKTNGEDKRLMKTNGSKISCVFRENEEHCFAAKKEENILWLTHSTYK
SSLEQDEQYFFATEVFFPIDEDLELLSRRRADIWWDETVYFRVEVLLDFV
EGACVFRYPGKQATEIATPIAVILLGVWTFSLASLIVSSPTVFCGFYRVS
DISHLAARTTRLSNDELYPIPDPVIHIRRVGELPEQFVMTNLRNLSSLRD
SDNDSINEE*
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mRNA from alignment at tig00004439_pilon:545542..546621-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1866.t1 ID=Gchil1866.t1|Name=Gchil1866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004439_pilon:545542..546621- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGATAATCGCACTACCGTCTCCACTTGTCAGCGTGATTCTATCGGT
GATAAACTGCTTTGCTGAATTCTCTTTGCCGAGCTCCGCGAAAGCACTCA
ACTCAGTCTTTGAACTTTTCCAACTTCGTCGCCGCAATCTTCTTCGTATT
AAAAGCCATGTACGCCGCATCACAATTTTGGAGTTTCTCTTTCTTCTACT
CTTCATTGTTCTCGAAGTCTTGGTTTCGTTTTATTCATTTCCAGCGCGAT
CAGCTCGCAATGGGACAGATCCATGCGTATCTGTGGGAACAAGCATTGGA
ACTGGATCGGAAAGGGTGAAGAGCCCCACAACCCAAGCCCAACATATTAT
GATTTCCTGCTCTCACATTGAAGGGGATTCTATTTTTTTTCGCCTAGGCA
ACTACAGTTTGAGCTCGGAGAACAAGGCGGTAAACTGCAGTGACACGCCG
GCTTTCAAGTTCAAGACCAATGGGGAAGATAAGAGGCTAATGAAAACGAA
CGGAAGCAAAATATCATGTGTATTCAGAGAAAATGAAGAGCATTGCTTTG
CAGCAAAGAAAGAGGAAAACATTTTGTGGCTAACACATTCCACATATAAG
AGTTCTCTTGAGCAGGACGAGCAGTATTTCTTCGCTACTGAGGTCTTCTT
TCCTATTGATGAGGACTTAGAATTGTTGTCCAGAAGGCGAGCAGATATAT
GGTGGGACGAAACAGTGTATTTTCGTGTAGAAGTGCTATTGGACTTTGTC
GAAGGGGCATGTGTGTTCAGATATCCGGGAAAACAAGCAACAGAGATTGC
CACTCCTATCGCTGTGATTCTATTGGGGGTCTGGACGTTTTCGCTTGCTT
CCCTCATTGTGAGCTCACCGACTGTTTTCTGTGGATTCTATAGAGTGAGC
GATATAAGTCACCTGGCCGCGCGAACAACTCGGCTTTCCAATGATGAATT
GTACCCCATACCTGACCCTGTTATCCATATCAGGCGTGTCGGAGAGCTGC
CTGAGCAATTTGTTATGACAAACCTGAGAAATCTAAGCAGTTTACGTGAC
TCCGATAACGATAGTATTAATGAAGAATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:545542..546621-

>Gchil1866.t1 ID=Gchil1866.t1|Name=Gchil1866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00004439_pilon:545542..546621- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGATAATCGCACTACCGTCTCCACTTGTCAGCGTGATTCTATCGGT
GATAAACTGCTTTGCTGAATTCTCTTTGCCGAGCTCCGCGAAAGCACTCA
ACTCAGTCTTTGAACTTTTCCAACTTCGTCGCCGCAATCTTCTTCGTATT
AAAAGCCATGTACGCCGCATCACAATTTTGGAGTTTCTCTTTCTTCTACT
CTTCATTGTTCTCGAAGTCTTGGTTTCGTTTTATTCATTTCCAGCGCGAT
CAGCTCGCAATGGGACAGATCCATGCGTATCTGTGGGAACAAGCATTGGA
ACTGGATCGGAAAGGGTGAAGAGCCCCACAACCCAAGCCCAACATATTAT
GATTTCCTGCTCTCACATTGAAGGGGATTCTATTTTTTTTCGCCTAGGCA
ACTACAGTTTGAGCTCGGAGAACAAGGCGGTAAACTGCAGTGACACGCCG
GCTTTCAAGTTCAAGACCAATGGGGAAGATAAGAGGCTAATGAAAACGAA
CGGAAGCAAAATATCATGTGTATTCAGAGAAAATGAAGAGCATTGCTTTG
CAGCAAAGAAAGAGGAAAACATTTTGTGGCTAACACATTCCACATATAAG
AGTTCTCTTGAGCAGGACGAGCAGTATTTCTTCGCTACTGAGGTCTTCTT
TCCTATTGATGAGGACTTAGAATTGTTGTCCAGAAGGCGAGCAGATATAT
GGTGGGACGAAACAGTGTATTTTCGTGTAGAAGTGCTATTGGACTTTGTC
GAAGGGGCATGTGTGTTCAGATATCCGGGAAAACAAGCAACAGAGATTGC
CACTCCTATCGCTGTGATTCTATTGGGGGTCTGGACGTTTTCGCTTGCTT
CCCTCATTGTGAGCTCACCGACTGTTTTCTGTGGATTCTATAGAGTGAGC
GATATAAGTCACCTGGCCGCGCGAACAACTCGGCTTTCCAATGATGAATT
GTACCCCATACCTGACCCTGTTATCCATATCAGGCGTGTCGGAGAGCTGC
CTGAGCAATTTGTTATGACAAACCTGAGAAATCTAAGCAGTTTACGTGAC
TCCGATAACGATAGTATTAATGAAGAATGA
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