Gchil1815.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1815.t1
Unique NameGchil1815.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length496
Homology
BLAST of Gchil1815.t1 vs. uniprot
Match: A0A2V3J9G3_9FLOR (Transcription termination factor MTERF2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9G3_9FLOR)

HSP 1 Score: 581 bits (1497), Expect = 8.090e-204
Identity = 284/415 (68.43%), Postives = 344/415 (82.89%), Query Frame = 0
Query:   81 AMCTRRPRPRFSCSAAPAPPKKPCTDEKKPKSIDSNRKVAEKFLLSLGLSVEESRRLPSRLPKLCRADLPIFAEPTLAYLRSLKLGSRQVARAVRHAPQIFFRPRDQFASRLEVLKTVAQIPKANLASVIAKCPHVLWMDVQNAATVAETLMEECPRMSLTTMGEVFSSVPQALLSRPSDLRENLSAIREAGVTDTASMSRVIAKAPMALVKDMKKCLAKRVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLGDKYVGAAMDKVPCLLATDNILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSIVGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGRRDVSVVDALRGTDVEFCRDVAKCDPKVFRSYVDNDTFLLFFSRLM 495
            A CTRRPR  F CSAAPA P+KP    K P   D  R+VA KF LSLGLS E S RLP+RLPKLCR+DLP+FAEPTLA+LRS  L  RQVARAVR+APQIFFRPR++FA R+E L+ VA+IPK NL SVIAKCPHVLWMD++NA  V ET++EECPR+SL T+ EVF  VPQ L+ RP+ +  N+ +IR+AGV+D A +SR+I KAP+ALV D KK LAKR+ YLS ELGF   T+GK+LVSTPEI++WSVE  + P+  L QSL+GD +V A ++ VP +L  +++LD VLWLRDDVGLSD+QV++VLREAPAVL+YS+VGNLAPKWTFIHETMGAT+EDLVAAPRE+LCA++QQRAMPRYAFLAS G+RDV+V+D LRG+D EFC++VAKCD +VFRSYVDNDT+LLFFSRLM
Sbjct:   21 AKCTRRPRVVFHCSAAPASPEKPRLSGKCPNEADPKREVAVKFFLSLGLSTEASLRLPARLPKLCRSDLPVFAEPTLAFLRSHGLSPRQVARAVRNAPQIFFRPREEFAPRIEFLENVARIPKDNLKSVIAKCPHVLWMDLKNAGMVTETVIEECPRISLKTLSEVFLRVPQVLIVRPNHISANIDSIRQAGVSDAAGLSRIIGKAPLALVYDTKKNLAKRLDYLSGELGFSKSTIGKILVSTPEILEWSVEKKIKPKTALLQSLVGDDHVAAVIETVPSILGVNDVLDPVLWLRDDVGLSDKQVQKVLREAPAVLTYSVVGNLAPKWTFIHETMGATVEDLVAAPREVLCANLQQRAMPRYAFLASHGKRDVAVIDVLRGSDAEFCKEVAKCDAQVFRSYVDNDTYLLFFSRLM 435          
BLAST of Gchil1815.t1 vs. uniprot
Match: A0A443N1G1_9MAGN (Transcription termination factor MTEF1, chloroplastic n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443N1G1_9MAGN)

HSP 1 Score: 68.9 bits (167), Expect = 2.610e-9
Identity = 49/184 (26.63%), Postives = 91/184 (49.46%), Query Frame = 0
Query:  268 IREAGVTDTASMSRVIAKAPMALVKDMKKCLAKRVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLGDKYVGAAMDKVPCLL--ATDNILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSIVGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSG 449
            ++  G +D+    R+    P   + D+   +A    ++SD+L    +    L+   P+++  S ++ L P +   + L G K + +       LL      + +++ +L + +GLS E+ RRV    PA+  YS+  NL PK+ F+ + MG TIE+L   P +    S+++R +PR+  L   G
Sbjct:   81 LKSMGFSDS-QFPRLSFLTPQIFLSDVAD-IAAVFAFMSDDLAASPQESIALIHRCPDLLLTSADDCLRPTLAFLRDL-GIKNLNSPTSLNAHLLNLRVGKLQEKIRFL-ESLGLSREEARRVCARLPAIFGYSVENNLMPKFEFLTDVMGRTIEELKGFP-QYFAFSLEKRILPRHLHLKERG 259          
BLAST of Gchil1815.t1 vs. uniprot
Match: A0A2W1BV23_HELAM (Uncharacterized protein n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1BV23_HELAM)

HSP 1 Score: 65.9 bits (159), Expect = 4.490e-8
Identity = 51/212 (24.06%), Postives = 100/212 (47.17%), Query Frame = 0
Query:  283 IAKAPMALVKDMKKCLAKRVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLG--DKYVGAAMDKVPCLLATD--NILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSIVGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGRRD--------VSVVDALRGTDVEFCRDVAKCDPKVFRSYV 482
            + K PM L + ++  L  RV+YL  +  F    + +++V  P  + +S    +  R+  FQ+ L    + +     K P L+  +  ++   +  +++++G +DE+V++++   P +L  S    L  ++ +IH  M    E+++  P  ++C     R   R+ FL   GR          + +   +  TDVEFCR+ AKC    F  ++
Sbjct:  128 LTKNPMILCEKLED-LEVRVNYLQSK-AFKNNEIKRIIVKNPFWLMFSTLR-IDKRLGYFQNCLNLRGQELRDLATKQPKLITYNLHHVKCNMFIIKEEMGFNDEEVKKLVMMKPKLLMLSQTA-LEERFNYIHNVMKIPHENIMETPEILMCRKF--RLKQRHLFLEKLGRSQYDPKKPNYIPLKSMIEDTDVEFCRNFAKCSVNDFNIFL 333          
BLAST of Gchil1815.t1 vs. uniprot
Match: A0A0D9VU87_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VU87_9ORYZ)

HSP 1 Score: 60.8 bits (146), Expect = 5.920e-7
Identity = 48/176 (27.27%), Postives = 79/176 (44.89%), Query Frame = 0
Query:  298 LAKRVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLGDKYVGAAMDKVPCLLATDNILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSIVGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGRRDVSVVDALRGTDVEFCRDVAKC 473
            +A  + +L+DE G P   + ++L   P ++   V   L P +  F   LG   +    D +      D +L R+ +L D +GL     R + R  PA+  Y I GN+ PK  ++   M    ++L   P E    ++  R  PR+   A+ G R + +   LR  D +F   +A C
Sbjct:   13 IAAALRFLTDEAGVPADDLPRVLRRRPRLLVSPVAARLRPTL-YFLRALGVADLPHRADLLS-FSVEDKLLPRIEFLEDALGLPSRAARSMARRFPALFYYGIEGNMRPKADYLLGEMRRGADELFDFP-ECFSYALATRIAPRHEACAARGVR-MPLPAMLRPGDAKFRATLAGC 184          
BLAST of Gchil1815.t1 vs. uniprot
Match: UPI001C207C1C (transcription termination factor 3, mitochondrial n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C207C1C)

HSP 1 Score: 61.6 bits (148), Expect = 1.030e-6
Identity = 50/207 (24.15%), Postives = 99/207 (47.83%), Query Frame = 0
Query:  279 MSRVIAKAPMALVKDMKKCLAKRVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSL--LGDKYVGAAMDKVPCLLATD--NILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSIVGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGRRD--------VSVVDALRGTDVEFCRDVAKC 473
            M   ++K PM L +D+   L  R+HYL  +  F    + K+++  P  + +S    +  R+  FQS   L    +     K P ++  +  +I      +++++G +D+++++++   P  L       L  ++ +IH T+  + E+++  P  +LC + + +   R+ FL   GR          V ++     TDVEFC++ AKC
Sbjct:  116 MGTFLSKNPMILTEDIDN-LHVRIHYLQSK-QFNNIQITKIILKNPFWLMYSTVR-IDRRLGYFQSKFDLSGNDIRNLATKQPKIITYNLHHINTNSFVIKEEMGYNDQEIKQLILHQPK-LWMICQKKLLERFNYIHNTIKISHENILLHPNILLCRNFKIKQ--RHIFLQQLGRAQFDPSKENYVPIMALAENTDVEFCKNHAKC 316          
BLAST of Gchil1815.t1 vs. uniprot
Match: UPI0008FD86CD (transcription termination factor MTEF1, chloroplastic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD86CD)

HSP 1 Score: 60.1 bits (144), Expect = 2.520e-6
Identity = 45/193 (23.32%), Postives = 85/193 (44.04%), Query Frame = 0
Query:  278 SMSRVIAKAPMALVKDMKKCLAKRVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLGDKYVG----AAMDKVPCLLATDNILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSIVGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGRRDVSVVDALRGTDVEF 466
            ++ R++   P  L  D +  +   + +L+DE+      + K +   P ++  SV+  L P +   QSL    +VG     +   V                      + E+V ++   +PA+L+YS+  NLAPK  F  E M   +E++   P +    S++++  PR+  L   G   + + + L+ +D EF
Sbjct:   87 AVGRILDMFPDLLTSDPEVVILPVIRFLADEISISRFEIPKSISRCPRLLVSSVDFQLRPALAFLQSL---GFVGRDAITSRTTVXXXXXXXXXXXXXXXXXXXXXXTREEVAKMAVRSPAILTYSVHNNLAPKVKFFMEEMSGNVEEIKRFP-QYFSFSLEKKIKPRHRLLKEHGIL-MPLSEMLKVSDGEF 274          
BLAST of Gchil1815.t1 vs. uniprot
Match: A0A6A4JXH1_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JXH1_APOLU)

HSP 1 Score: 59.3 bits (142), Expect = 6.590e-6
Identity = 47/216 (21.76%), Postives = 103/216 (47.69%), Query Frame = 0
Query:  279 MSRVIAKAPMALVKDMKKCLAKRVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSL--LGDKYVGAAMDKVPCLLATDNILDRV--LWLRDDVGLSDEQVRRVLREAPAVLSYSIVGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGRRD--------VSVVDALRGTDVEFCRDVAKCDPKVFRSYV 482
            +   I K P    ++++  L  R++YL  +L F + ++ ++++  P+ +  S + D+  R+   QSL  L    V A   ++P L+     L  V    + +++G + E+ + +L   P + +    G +  ++ ++H  MG +   +   P   +    + +   R++FL S G+          VS+   + G+D++FC+DVAK    ++  ++
Sbjct:  141 LGNFITKNPFIFKEELEN-LQIRINYLEAKL-FSSDSIARIILKNPKWLSHSTK-DIDHRLGFLQSLFSLVGPEVRAVTTRMPKLVTYPLRLIEVAKFGIVEEMGFTQEESKSLLLSKPKIYTIRREGAVT-RFNYVHNEMGISHSQITCQPD--ILTYRESKIRERHSFLKSIGKAQYDPKTPGYVSLKALMSGSDLDFCKDVAKSSILIYNKFL 350          
The following BLAST results are available for this feature:
BLAST of Gchil1815.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J9G3_9FLOR8.090e-20468.43Transcription termination factor MTERF2, chloropla... [more]
A0A443N1G1_9MAGN2.610e-926.63Transcription termination factor MTEF1, chloroplas... [more]
A0A2W1BV23_HELAM4.490e-824.06Uncharacterized protein n=1 Tax=Helicoverpa armige... [more]
A0A0D9VU87_9ORYZ5.920e-727.27Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
UPI001C207C1C1.030e-624.15transcription termination factor 3, mitochondrial ... [more]
UPI0008FD86CD2.520e-623.32transcription termination factor MTEF1, chloroplas... [more]
A0A6A4JXH1_APOLU6.590e-621.76Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 171..202
e-value: 540.0
score: 6.0
coord: 317..348
e-value: 1.9
score: 17.5
coord: 244..274
e-value: 310.0
score: 7.8
coord: 352..381
e-value: 2200.0
score: 1.2
coord: 280..312
e-value: 0.62
score: 19.1
coord: 386..418
e-value: 0.088
score: 21.9
coord: 135..166
e-value: 1600.0
score: 2.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 157..466
e-value: 4.6E-29
score: 101.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 299..466
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 140..340
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 237..483
e-value: 9.8E-39
score: 135.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..42
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 299..466
coord: 140..340

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2695602..2697089 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1815.t1Gchil1815.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 2695602..2697089 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1815.t1 ID=Gchil1815.t1|Name=Gchil1815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=496bp
MFDSSIQKKLHLVFKAKWRTRNGTKQETSSASSGKPFRRTKAQQRLFREV
QKAKFAPRNNMAFVNAALSKHGALYTRQSTAMCTRRPRPRFSCSAAPAPP
KKPCTDEKKPKSIDSNRKVAEKFLLSLGLSVEESRRLPSRLPKLCRADLP
IFAEPTLAYLRSLKLGSRQVARAVRHAPQIFFRPRDQFASRLEVLKTVAQ
IPKANLASVIAKCPHVLWMDVQNAATVAETLMEECPRMSLTTMGEVFSSV
PQALLSRPSDLRENLSAIREAGVTDTASMSRVIAKAPMALVKDMKKCLAK
RVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLGDKY
VGAAMDKVPCLLATDNILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSI
VGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGR
RDVSVVDALRGTDVEFCRDVAKCDPKVFRSYVDNDTFLLFFSRLM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf