Gchil1815.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1815.t1
Unique Name	Gchil1815.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	496

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2695602..2697089 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FXW7
PFAMs	mTERF
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15032
Evalue	1.29e-12
EggNOG OGs	KOG1267@1\|root,KOG1267@2759\|Eukaryota
Description	termination of mitochondrial transcription
COG category	S
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1815	Gchil1815	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2695602..2697089 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1815.t1.start1	Gchil1815.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2695602..2695604 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1815.t1.CDS1	Gchil1815.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2695602..2697089 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1815.t1.exon1	Gchil1815.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2695602..2697089 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1815.t1.stop1	Gchil1815.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2697087..2697089 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1815.t1	Gchil1815.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2695602..2697089 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2695602..2697089+
coding sequence from alignment at tig00004403_pilon:2695602..2697089+

mRNA sequence

>Gchil1815.t1 ID=Gchil1815.t1|Name=Gchil1815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=496bp
MFDSSIQKKLHLVFKAKWRTRNGTKQETSSASSGKPFRRTKAQQRLFREV
QKAKFAPRNNMAFVNAALSKHGALYTRQSTAMCTRRPRPRFSCSAAPAPP
KKPCTDEKKPKSIDSNRKVAEKFLLSLGLSVEESRRLPSRLPKLCRADLP
IFAEPTLAYLRSLKLGSRQVARAVRHAPQIFFRPRDQFASRLEVLKTVAQ
IPKANLASVIAKCPHVLWMDVQNAATVAETLMEECPRMSLTTMGEVFSSV
PQALLSRPSDLRENLSAIREAGVTDTASMSRVIAKAPMALVKDMKKCLAK
RVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLGDKY
VGAAMDKVPCLLATDNILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSI
VGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGR
RDVSVVDALRGTDVEFCRDVAKCDPKVFRSYVDNDTFLLFFSRLM*

spliced messenger RNA

>Gchil1815.t1 ID=Gchil1815.t1|Name=Gchil1815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004403_pilon:2695602..2697089+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGACAGTAGTATCCAAAAAAAGCTGCATCTCGTCTTCAAGGCCAA
GTGGAGAACAAGAAACGGGACAAAACAAGAGACCTCGTCGGCCAGCAGTG
GGAAGCCTTTTCGCCGAACAAAGGCACAACAGCGCCTCTTTCGCGAGGTG
CAAAAGGCGAAGTTCGCACCTCGAAACAATATGGCCTTCGTGAATGCTGC
ATTAAGCAAGCATGGCGCTCTGTATACACGACAAAGCACAGCCATGTGCA
CACGACGACCGCGACCGCGCTTCAGCTGCTCCGCCGCACCCGCGCCCCCC
AAAAAGCCATGTACTGATGAAAAGAAACCCAAGAGCATTGATTCAAACCG
GAAAGTTGCCGAAAAGTTCTTACTCTCGTTAGGACTGAGCGTGGAGGAAT
CACGCCGCTTACCAAGTCGTTTGCCAAAATTGTGTCGCGCCGACCTTCCA
ATCTTTGCAGAACCTACACTAGCGTATTTGCGATCGTTGAAGCTGGGATC
GCGCCAAGTTGCCCGTGCTGTTCGACACGCGCCACAGATTTTCTTCCGAC
CACGCGACCAGTTTGCCTCGCGCTTAGAGGTTTTGAAGACTGTTGCACAG
ATACCGAAGGCGAATTTGGCGTCCGTGATTGCGAAATGTCCGCACGTGTT
GTGGATGGACGTTCAAAACGCAGCCACAGTAGCGGAAACATTGATGGAAG
AATGTCCAAGAATGTCGTTGACCACCATGGGGGAGGTGTTTTCAAGTGTG
CCTCAAGCTTTACTCAGTCGACCCAGTGACCTCCGAGAGAATTTGAGCGC
TATTCGTGAGGCTGGGGTTACTGATACGGCGAGCATGAGTCGCGTTATAG
CAAAGGCGCCTATGGCATTAGTCAAAGACATGAAGAAATGTCTGGCGAAA
CGAGTACACTATCTTTCAGACGAACTGGGATTTCCGACGAGAACCGTAGG
AAAACTTCTGGTAAGCACGCCAGAAATTATTGACTGGAGCGTGGAGAACG
ATTTGATTCCAAGAGTAGAGCTGTTCCAATCGTTGTTGGGAGATAAATAC
GTTGGGGCAGCCATGGACAAAGTGCCGTGCCTTCTCGCAACTGACAACAT
TCTTGATCGAGTTTTATGGTTACGCGACGATGTAGGACTCTCCGACGAGC
AAGTGCGGAGGGTGTTACGGGAAGCGCCGGCCGTGTTGTCATATTCAATT
GTGGGGAACCTAGCGCCGAAATGGACGTTCATACATGAAACGATGGGGGC
AACAATTGAAGACCTGGTTGCAGCGCCTCGCGAGATGTTGTGTGCTAGTA
TGCAACAGCGTGCTATGCCTCGGTACGCATTTTTGGCGAGTAGTGGGAGA
CGAGATGTGAGCGTGGTGGATGCTCTACGAGGCACTGACGTGGAATTCTG
CAGGGATGTAGCCAAATGTGATCCAAAGGTATTCCGCAGTTATGTAGATA
ACGATACATTTTTGTTGTTCTTTTCTAGACTTATGTGA

protein sequence of Gchil1815.t1

>Gchil1815.t1 ID=Gchil1815.t1|Name=Gchil1815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=496bp
MFDSSIQKKLHLVFKAKWRTRNGTKQETSSASSGKPFRRTKAQQRLFREV
QKAKFAPRNNMAFVNAALSKHGALYTRQSTAMCTRRPRPRFSCSAAPAPP
KKPCTDEKKPKSIDSNRKVAEKFLLSLGLSVEESRRLPSRLPKLCRADLP
IFAEPTLAYLRSLKLGSRQVARAVRHAPQIFFRPRDQFASRLEVLKTVAQ
IPKANLASVIAKCPHVLWMDVQNAATVAETLMEECPRMSLTTMGEVFSSV
PQALLSRPSDLRENLSAIREAGVTDTASMSRVIAKAPMALVKDMKKCLAK
RVHYLSDELGFPTRTVGKLLVSTPEIIDWSVENDLIPRVELFQSLLGDKY
VGAAMDKVPCLLATDNILDRVLWLRDDVGLSDEQVRRVLREAPAVLSYSI
VGNLAPKWTFIHETMGATIEDLVAAPREMLCASMQQRAMPRYAFLASSGR
RDVSVVDALRGTDVEFCRDVAKCDPKVFRSYVDNDTFLLFFSRLM*

mRNA from alignment at tig00004403_pilon:2695602..2697089+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1815.t1 ID=Gchil1815.t1|Name=Gchil1815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004403_pilon:2695602..2697089+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGACAGTAGTATCCAAAAAAAGCTGCATCTCGTCTTCAAGGCCAA
GTGGAGAACAAGAAACGGGACAAAACAAGAGACCTCGTCGGCCAGCAGTG
GGAAGCCTTTTCGCCGAACAAAGGCACAACAGCGCCTCTTTCGCGAGGTG
CAAAAGGCGAAGTTCGCACCTCGAAACAATATGGCCTTCGTGAATGCTGC
ATTAAGCAAGCATGGCGCTCTGTATACACGACAAAGCACAGCCATGTGCA
CACGACGACCGCGACCGCGCTTCAGCTGCTCCGCCGCACCCGCGCCCCCC
AAAAAGCCATGTACTGATGAAAAGAAACCCAAGAGCATTGATTCAAACCG
GAAAGTTGCCGAAAAGTTCTTACTCTCGTTAGGACTGAGCGTGGAGGAAT
CACGCCGCTTACCAAGTCGTTTGCCAAAATTGTGTCGCGCCGACCTTCCA
ATCTTTGCAGAACCTACACTAGCGTATTTGCGATCGTTGAAGCTGGGATC
GCGCCAAGTTGCCCGTGCTGTTCGACACGCGCCACAGATTTTCTTCCGAC
CACGCGACCAGTTTGCCTCGCGCTTAGAGGTTTTGAAGACTGTTGCACAG
ATACCGAAGGCGAATTTGGCGTCCGTGATTGCGAAATGTCCGCACGTGTT
GTGGATGGACGTTCAAAACGCAGCCACAGTAGCGGAAACATTGATGGAAG
AATGTCCAAGAATGTCGTTGACCACCATGGGGGAGGTGTTTTCAAGTGTG
CCTCAAGCTTTACTCAGTCGACCCAGTGACCTCCGAGAGAATTTGAGCGC
TATTCGTGAGGCTGGGGTTACTGATACGGCGAGCATGAGTCGCGTTATAG
CAAAGGCGCCTATGGCATTAGTCAAAGACATGAAGAAATGTCTGGCGAAA
CGAGTACACTATCTTTCAGACGAACTGGGATTTCCGACGAGAACCGTAGG
AAAACTTCTGGTAAGCACGCCAGAAATTATTGACTGGAGCGTGGAGAACG
ATTTGATTCCAAGAGTAGAGCTGTTCCAATCGTTGTTGGGAGATAAATAC
GTTGGGGCAGCCATGGACAAAGTGCCGTGCCTTCTCGCAACTGACAACAT
TCTTGATCGAGTTTTATGGTTACGCGACGATGTAGGACTCTCCGACGAGC
AAGTGCGGAGGGTGTTACGGGAAGCGCCGGCCGTGTTGTCATATTCAATT
GTGGGGAACCTAGCGCCGAAATGGACGTTCATACATGAAACGATGGGGGC
AACAATTGAAGACCTGGTTGCAGCGCCTCGCGAGATGTTGTGTGCTAGTA
TGCAACAGCGTGCTATGCCTCGGTACGCATTTTTGGCGAGTAGTGGGAGA
CGAGATGTGAGCGTGGTGGATGCTCTACGAGGCACTGACGTGGAATTCTG
CAGGGATGTAGCCAAATGTGATCCAAAGGTATTCCGCAGTTATGTAGATA
ACGATACATTTTTGTTGTTCTTTTCTAGACTTATGTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:2695602..2697089+

>Gchil1815.t1 ID=Gchil1815.t1|Name=Gchil1815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00004403_pilon:2695602..2697089+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGACAGTAGTATCCAAAAAAAGCTGCATCTCGTCTTCAAGGCCAA
GTGGAGAACAAGAAACGGGACAAAACAAGAGACCTCGTCGGCCAGCAGTG
GGAAGCCTTTTCGCCGAACAAAGGCACAACAGCGCCTCTTTCGCGAGGTG
CAAAAGGCGAAGTTCGCACCTCGAAACAATATGGCCTTCGTGAATGCTGC
ATTAAGCAAGCATGGCGCTCTGTATACACGACAAAGCACAGCCATGTGCA
CACGACGACCGCGACCGCGCTTCAGCTGCTCCGCCGCACCCGCGCCCCCC
AAAAAGCCATGTACTGATGAAAAGAAACCCAAGAGCATTGATTCAAACCG
GAAAGTTGCCGAAAAGTTCTTACTCTCGTTAGGACTGAGCGTGGAGGAAT
CACGCCGCTTACCAAGTCGTTTGCCAAAATTGTGTCGCGCCGACCTTCCA
ATCTTTGCAGAACCTACACTAGCGTATTTGCGATCGTTGAAGCTGGGATC
GCGCCAAGTTGCCCGTGCTGTTCGACACGCGCCACAGATTTTCTTCCGAC
CACGCGACCAGTTTGCCTCGCGCTTAGAGGTTTTGAAGACTGTTGCACAG
ATACCGAAGGCGAATTTGGCGTCCGTGATTGCGAAATGTCCGCACGTGTT
GTGGATGGACGTTCAAAACGCAGCCACAGTAGCGGAAACATTGATGGAAG
AATGTCCAAGAATGTCGTTGACCACCATGGGGGAGGTGTTTTCAAGTGTG
CCTCAAGCTTTACTCAGTCGACCCAGTGACCTCCGAGAGAATTTGAGCGC
TATTCGTGAGGCTGGGGTTACTGATACGGCGAGCATGAGTCGCGTTATAG
CAAAGGCGCCTATGGCATTAGTCAAAGACATGAAGAAATGTCTGGCGAAA
CGAGTACACTATCTTTCAGACGAACTGGGATTTCCGACGAGAACCGTAGG
AAAACTTCTGGTAAGCACGCCAGAAATTATTGACTGGAGCGTGGAGAACG
ATTTGATTCCAAGAGTAGAGCTGTTCCAATCGTTGTTGGGAGATAAATAC
GTTGGGGCAGCCATGGACAAAGTGCCGTGCCTTCTCGCAACTGACAACAT
TCTTGATCGAGTTTTATGGTTACGCGACGATGTAGGACTCTCCGACGAGC
AAGTGCGGAGGGTGTTACGGGAAGCGCCGGCCGTGTTGTCATATTCAATT
GTGGGGAACCTAGCGCCGAAATGGACGTTCATACATGAAACGATGGGGGC
AACAATTGAAGACCTGGTTGCAGCGCCTCGCGAGATGTTGTGTGCTAGTA
TGCAACAGCGTGCTATGCCTCGGTACGCATTTTTGGCGAGTAGTGGGAGA
CGAGATGTGAGCGTGGTGGATGCTCTACGAGGCACTGACGTGGAATTCTG
CAGGGATGTAGCCAAATGTGATCCAAAGGTATTCCGCAGTTATGTAGATA
ACGATACATTTTTGTTGTTCTTTTCTAGACTTATGTGA