Gchil1771.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1771.t1
Unique NameGchil1771.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length208
Homology
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BLAST of Gchil1771.t1 vs. uniprot
Match: A0A2V3J6B7_9FLOR (Transmembrane emp24 domain-containing protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B7_9FLOR)

HSP 1 Score: 278 bits (710), Expect = 1.850e-92
Identity = 140/203 (68.97%), Postives = 163/203 (80.30%), Query Frame = 0 
Query:    5 PLILLTLAVALGCAPTAHSFGIHIPPGGMEHCFFREVHANYHIYIHYVARETINIKLMDTNDKVLYAKRSVLQGSFDFQVIEDGSYRICLSVEQMRRKPTITKFRFLVVDPNISSDKIATLEQVHTATKLCDDVKKLSDRVLFRTHLYSDTALETDEVLKSSISLTGRLVALECVAALLAAVSQVSYVRKMLWSSRSRLQRMV 207
            P     L + L  AP   +FGI IPPGGMEHCFFREVH N H+Y+HYVARETINI + D N+++LY K+SV+QGSFDF   EDGSYRICLSVE MRRKPTI KFRFLVVDP++  DK+AT  Q H A  L + VK LSD+VLFRTHLYSDTA ETDE LKSS++L  R+VALECVAALLAA+SQVSY+RK+L++SRSR QRMV
Sbjct:    3 PFFAFLLVLILTNAPVVRAFGIQIPPGGMEHCFFREVHVNDHVYVHYVARETINISVKDGNERILYQKKSVVQGSFDFAAQEDGSYRICLSVELMRRKPTIAKFRFLVVDPSVLGDKVATSGQAHKANHLSNKVKSLSDQVLFRTHLYSDTAYETDETLKSSVTLAARMVALECVAALLAAISQVSYIRKVLFASRSRRQRMV 205
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BLAST of Gchil1771.t1 vs. uniprot
Match: R7Q4A8_CHOCR (GOLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4A8_CHOCR)

HSP 1 Score: 181 bits (460), Expect = 1.580e-54
Identity = 94/187 (50.27%), Postives = 129/187 (68.98%), Query Frame = 0 
Query:   21 AHSFGIHIPPGGMEHCFFREVHANYHIYIHYVARETINIKLMDTNDKVLYAKRSVLQGSFDFQVIEDGSYRICLSVEQMRRKPTITKFRFLVVDPNISSDKIATLEQVHTATKLCDDVKKLSDRVLFRTHLYSDTALETDEVLKSSISLTGRLVALECVAALLAAVSQVSYVRKMLWSSRSRLQRMV 207
            A SFGI +P  G + CF+RE+ +N H+ +HYVARET++I +   + + +Y+K SVLQG   F   EDG Y+ C+S +  RR PTI KFRFL   P++ +  IA   Q   A  L  ++ K+SD+VL+  HLY+DT   TDE LKSSI+LTGRL ALECVA L+ A++QV YVR +L ++RS++QRMV
Sbjct:   18 ALSFGIQVP-AGEKSCFYRELRSNMHVSLHYVARETVSIAVQAPSKEGIYSKTSVLQGEHSFNAKEDGPYQFCVSTDSTRRAPTIAKFRFLAFPPDVFNSDIAKSTQAFDARMLTLELSKISDKVLYSAHLYADTTSATDETLKSSIALTGRLAALECVAVLVVALAQVKYVRNILSATRSKVQRMV 203
The following BLAST results are available for this feature:
BLAST of Gchil1771.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6B7_9FLOR1.850e-9268.97Transmembrane emp24 domain-containing protein 6 n=... [more]
R7Q4A8_CHOCR1.580e-5450.27GOLD domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 23..197
e-value: 7.8E-7
score: 38.7
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 24..195
e-value: 5.3E-12
score: 46.1
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 34..151
score: 10.498723
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..192
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 193..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2293055..2293678 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1771.t1Gchil1771.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 2293055..2293678 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1771.t1 ID=Gchil1771.t1|Name=Gchil1771.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=208bp
MWLPPLILLTLAVALGCAPTAHSFGIHIPPGGMEHCFFREVHANYHIYIH
YVARETINIKLMDTNDKVLYAKRSVLQGSFDFQVIEDGSYRICLSVEQMR
RKPTITKFRFLVVDPNISSDKIATLEQVHTATKLCDDVKKLSDRVLFRTH
LYSDTALETDEVLKSSISLTGRLVALECVAALLAAVSQVSYVRKMLWSSR
SRLQRMV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom