Gchil1771.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1771.t1
Unique Name	Gchil1771.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2293055..2293678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4096.XP_009802634.1
PFAMs	EMP24_GP25L
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20352
KEGG TC	9.B.188
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005801,GO:0012505,GO:0016020,GO:0030134,GO:0030135,GO:0031410,GO:0031982,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098827
Evalue	0.000548
EggNOG OGs	KOG1691@1\|root,KOG1691@2759\|Eukaryota,37RH6@33090\|Viridiplantae,3GE2B@35493\|Streptophyta,44T1C@71274\|asterids
Description	Transmembrane emp24 domain-containing protein
COG category	U
BRITE	ko00000,ko02000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1771	Gchil1771	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2293055..2293678 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1771.t1.start1	Gchil1771.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2293055..2293057 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1771.t1.CDS1	Gchil1771.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2293055..2293678 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1771.t1.exon1	Gchil1771.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2293055..2293678 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1771.t1.stop1	Gchil1771.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2293676..2293678 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1771.t1	Gchil1771.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2293055..2293678 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2293055..2293678+
coding sequence from alignment at tig00004403_pilon:2293055..2293678+

mRNA sequence

>Gchil1771.t1 ID=Gchil1771.t1|Name=Gchil1771.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=208bp
MWLPPLILLTLAVALGCAPTAHSFGIHIPPGGMEHCFFREVHANYHIYIH
YVARETINIKLMDTNDKVLYAKRSVLQGSFDFQVIEDGSYRICLSVEQMR
RKPTITKFRFLVVDPNISSDKIATLEQVHTATKLCDDVKKLSDRVLFRTH
LYSDTALETDEVLKSSISLTGRLVALECVAALLAAVSQVSYVRKMLWSSR
SRLQRMV*

spliced messenger RNA

>Gchil1771.t1 ID=Gchil1771.t1|Name=Gchil1771.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00004403_pilon:2293055..2293678+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTGCCTCCGCTCATCTTGTTGACACTCGCAGTTGCTTTGGGTTG
TGCCCCCACAGCCCATTCCTTCGGAATTCATATACCTCCAGGAGGTATGG
AGCACTGCTTTTTCAGAGAAGTTCATGCCAATTATCATATATACATTCAC
TATGTGGCCCGTGAAACCATTAATATTAAACTAATGGACACAAACGATAA
AGTTTTGTACGCAAAACGATCAGTTCTTCAAGGAAGTTTCGATTTTCAAG
TCATCGAAGACGGATCCTACCGAATATGCCTTTCAGTGGAACAAATGAGA
AGGAAACCAACCATAACTAAGTTCCGTTTTCTGGTGGTTGATCCCAACAT
TTCGAGCGATAAAATTGCCACTTTGGAACAGGTACACACGGCAACCAAAC
TCTGCGATGACGTCAAGAAGCTCTCAGACCGTGTGCTTTTCCGAACTCAT
CTTTACTCAGACACCGCACTTGAGACAGATGAAGTATTGAAGAGTTCGAT
TTCGCTCACAGGTCGATTGGTAGCCCTAGAATGTGTTGCGGCGCTTCTGG
CCGCTGTAAGTCAAGTCTCGTACGTCCGCAAAATGTTATGGTCGAGCCGT
TCGAGACTTCAACGCATGGTGTGA

protein sequence of Gchil1771.t1

>Gchil1771.t1 ID=Gchil1771.t1|Name=Gchil1771.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=208bp
MWLPPLILLTLAVALGCAPTAHSFGIHIPPGGMEHCFFREVHANYHIYIH
YVARETINIKLMDTNDKVLYAKRSVLQGSFDFQVIEDGSYRICLSVEQMR
RKPTITKFRFLVVDPNISSDKIATLEQVHTATKLCDDVKKLSDRVLFRTH
LYSDTALETDEVLKSSISLTGRLVALECVAALLAAVSQVSYVRKMLWSSR
SRLQRMV*

mRNA from alignment at tig00004403_pilon:2293055..2293678+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1771.t1 ID=Gchil1771.t1|Name=Gchil1771.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00004403_pilon:2293055..2293678+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGTTGCCTCCGCTCATCTTGTTGACACTCGCAGTTGCTTTGGGTTG
TGCCCCCACAGCCCATTCCTTCGGAATTCATATACCTCCAGGAGGTATGG
AGCACTGCTTTTTCAGAGAAGTTCATGCCAATTATCATATATACATTCAC
TATGTGGCCCGTGAAACCATTAATATTAAACTAATGGACACAAACGATAA
AGTTTTGTACGCAAAACGATCAGTTCTTCAAGGAAGTTTCGATTTTCAAG
TCATCGAAGACGGATCCTACCGAATATGCCTTTCAGTGGAACAAATGAGA
AGGAAACCAACCATAACTAAGTTCCGTTTTCTGGTGGTTGATCCCAACAT
TTCGAGCGATAAAATTGCCACTTTGGAACAGGTACACACGGCAACCAAAC
TCTGCGATGACGTCAAGAAGCTCTCAGACCGTGTGCTTTTCCGAACTCAT
CTTTACTCAGACACCGCACTTGAGACAGATGAAGTATTGAAGAGTTCGAT
TTCGCTCACAGGTCGATTGGTAGCCCTAGAATGTGTTGCGGCGCTTCTGG
CCGCTGTAAGTCAAGTCTCGTACGTCCGCAAAATGTTATGGTCGAGCCGT
TCGAGACTTCAACGCATGGTGTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:2293055..2293678+

>Gchil1771.t1 ID=Gchil1771.t1|Name=Gchil1771.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=624bp|location=Sequence derived from alignment at tig00004403_pilon:2293055..2293678+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGTTGCCTCCGCTCATCTTGTTGACACTCGCAGTTGCTTTGGGTTG
TGCCCCCACAGCCCATTCCTTCGGAATTCATATACCTCCAGGAGGTATGG
AGCACTGCTTTTTCAGAGAAGTTCATGCCAATTATCATATATACATTCAC
TATGTGGCCCGTGAAACCATTAATATTAAACTAATGGACACAAACGATAA
AGTTTTGTACGCAAAACGATCAGTTCTTCAAGGAAGTTTCGATTTTCAAG
TCATCGAAGACGGATCCTACCGAATATGCCTTTCAGTGGAACAAATGAGA
AGGAAACCAACCATAACTAAGTTCCGTTTTCTGGTGGTTGATCCCAACAT
TTCGAGCGATAAAATTGCCACTTTGGAACAGGTACACACGGCAACCAAAC
TCTGCGATGACGTCAAGAAGCTCTCAGACCGTGTGCTTTTCCGAACTCAT
CTTTACTCAGACACCGCACTTGAGACAGATGAAGTATTGAAGAGTTCGAT
TTCGCTCACAGGTCGATTGGTAGCCCTAGAATGTGTTGCGGCGCTTCTGG
CCGCTGTAAGTCAAGTCTCGTACGTCCGCAAAATGTTATGGTCGAGCCGT
TCGAGACTTCAACGCATGGTGTGA