Gchil1745.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1745.t1
Unique NameGchil1745.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length177
Homology
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BLAST of Gchil1745.t1 vs. uniprot
Match: A0A2V3IVZ6_9FLOR (Two-component response regulator-like APRR1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVZ6_9FLOR)

HSP 1 Score: 215 bits (547), Expect = 2.380e-68
Identity = 130/175 (74.29%), Postives = 144/175 (82.29%), Query Frame = 0 
Query:    1 MSRISSETNLAVQLLLAVSDARHCRPSSKTTRPNSSSATSSDLPGDSSDDSESTDCAVTPNHSPNLHQKRSSHPAASPRGVPPTFGRGDATFFKYNYEERQEALKRFREKKRRRQFQKXXXXXXXXRLAETRPRYKGRFSKPPPGENYDDGTPGPPARPRSPKKGETTQEKDKAA 175
            +SRISSETNLAVQLLLAVSDARHCRPS++  RP+SSSATSSD+P D SDDS+S D   T   SP L QK ++ P+ SPRGVPPTF RGDATFFKY  EERQEALKRFREKKRRRQF+ XXXXXXXX LAETRPRYKGRFSKPPPGE YDDGTPGPP + +S K+  T+  KD  A
Sbjct:   12 LSRISSETNLAVQLLLAVSDARHCRPSTQHGRPHSSSATSSDMPADLSDDSDSIDSTPTSAQSPALRQKITTPPSTSPRGVPPTFARGDATFFKYTREERQEALKRFREKKRRRQFRXXXXXXXXXXLAETRPRYKGRFSKPPPGETYDDGTPGPPPKSQSTKQ-TTSSAKDHTA 185
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BLAST of Gchil1745.t1 vs. uniprot
Match: R7Q474_CHOCR (CCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q474_CHOCR)

HSP 1 Score: 129 bits (325), Expect = 6.660e-35
Identity = 90/166 (54.22%), Postives = 107/166 (64.46%), Query Frame = 0 
Query:    1 MSRISSETNLAVQLLLAVSDARHC--RPSSKTTRPNSS------SATSSDLPGDSSDDSESTDCAVTPNHSPNLHQKRSSHPAASPRGVPPTFGRG-DATFFKYNYEERQEALKRFREKKRRRQFQKXXXXXXXXRLAETRPRYKGRFSKPPPGENYDDGTPGPPA 157
            M RI+SETNLAVQLLLAVS  R    R   +   P +S      S +S   PG++  DS++T+ A +   SP +  K +S P A  +      GRG D+T F+Y  EER +ALKRFR+KKRRRQFQK        RLAETRPRYKGRFSKPPPGENYDDGTPGP A
Sbjct:    1 MQRINSETNLAVQLLLAVSGDRPIVKRTPKRFALPAASPHIYRSSPSSCSEPGETCSDSDATEPATSAVASPAI-MKATSSPVALSKSH---HGRGADSTLFRYTREERLQALKRFRDKKRRRQFQKKVRYMVRKRLAETRPRYKGRFSKPPPGENYDDGTPGPQA 162
The following BLAST results are available for this feature:
BLAST of Gchil1745.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IVZ6_9FLOR2.380e-6874.29Two-component response regulator-like APRR1 n=1 Ta... [more]
R7Q474_CHOCR6.660e-3554.22CCT domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 100..141
e-value: 8.9E-15
score: 54.5
IPR010402CCT domainPROSITEPS51017CCTcoord: 100..142
score: 14.76298
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..176
NoneNo IPR availablePANTHERPTHR31874CCT MOTIF FAMILY PROTEIN, EXPRESSEDcoord: 22..141
NoneNo IPR availablePANTHERPTHR31874:SF1CCT MOTIF FAMILY PROTEIN, EXPRESSEDcoord: 22..141
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..176
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2116037..2116567 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1745.t1Gchil1745.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 2116037..2116567 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1745.t1 ID=Gchil1745.t1|Name=Gchil1745.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=177bp
MSRISSETNLAVQLLLAVSDARHCRPSSKTTRPNSSSATSSDLPGDSSDD
SESTDCAVTPNHSPNLHQKRSSHPAASPRGVPPTFGRGDATFFKYNYEER
QEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDD
GTPGPPARPRSPKKGETTQEKDKAAQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain