Gchil1728.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1728.t1
Unique NameGchil1728.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length265
Homology
BLAST of Gchil1728.t1 vs. uniprot
Match: A0A2V3IW10_9FLOR (DNA repair protein RAD51-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW10_9FLOR)

HSP 1 Score: 176 bits (447), Expect = 1.910e-50
Identity = 103/225 (45.78%), Postives = 145/225 (64.44%), Query Frame = 0
Query:   39 STICSGSATFDARARLESRTVVQMSAASRGGKTMMCVRLAATVLRGGGSVVWVDSGAGVWQVSAVVGRL--ASVARLSVVCVSSACDALRELERLVRHLQLHALDVAAPKPRLLVFDSPAALLAPVLGLRASSAYSGHTVMHQIAAAVNRFVLLSDATALLTNRVVGVATRPALGNAWSAFVDVHLLLQRLHSDHNGLHIRVVATSKRAPTCNFSLLITDTAIAD 261
            +++ +  A+F+    L S TV+Q+   S  GKTM+C+ LAA VL+    V+W+D+ AG W + A V     A +  L+V   ++A   + +L  L+   +L +L   AP PRLL+FDSPA++L+PVLGL+  + +SGHT M QI   ++RF+ LS AT ++TNRVV  ATRPALGN WS FVDVHL  QR+ +    L +R+  TSKRAPT  FS+LITD  + D
Sbjct:   65 TSLLTPCASFNHNVGLPSTTVLQLYGTSLAGKTMICISLAAAVLKQTQRVIWLDTCAGEWLLRAAVSNHSDAQIDLLTVRTATNAPQIVHQLRALIS--ELPSLP-NAPMPRLLIFDSPASVLSPVLGLKGPNGWSGHTAMQQITTLISRFITLSSATVVVTNRVVDSATRPALGNIWSNFVDVHLFCQRVDAHEQRLELRLTVTSKRAPTSTFSVLITDQGMTD 286          
BLAST of Gchil1728.t1 vs. uniprot
Match: R7Q8Q8_CHOCR (RECA_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8Q8_CHOCR)

HSP 1 Score: 81.6 bits (200), Expect = 2.690e-14
Identity = 77/225 (34.22%), Postives = 110/225 (48.89%), Query Frame = 0
Query:   39 STICSGSATFD--ARARLESRTVVQMSAASRGGKTMMCVRLAATVLRGGGSVVWVDSGAGVWQVSAVVGRLASV---------------ARLSVVCVSSACDALRELERLVRHL-----------------QLHALDVAAPKPRLLVFDSPAALLAPVLGLRASSAYSGHTVMHQIAAAVNRFVLLSDATALLTNRVV--GVATRPALGNAWSAFVDVHLLLQRL 227
            S + +GS+ FD      L  R + Q++     GKT   + +AA  LRGG +VVW+DS        A+  R++++               +RL V+  S+   AL  L  L + L                 Q H   V A + +L+VFDS A +LAPVLGLR    +SGH  ++Q A  +      +DA  L+TNRVV  G   +PALGN W+A VDV + L+ L
Sbjct:   73 SPLRTGSSAFDDVLDGGLRPRAITQLAGQPATGKTHSALAIAAHALRGG-AVVWLDSS----STHAIFSRISTILAALTVDPIERDLLLSRLIVLPASTVSTALACLRALRKDLVTQHSVLGERSLSQDGPQKHLATVLA-RLKLVVFDSVANVLAPVLGLR-DGPWSGHVALNQCATELRWISSRTDAAVLVTNRVVRDGERLKPALGNTWTALVDVSIRLEVL 290          
BLAST of Gchil1728.t1 vs. uniprot
Match: A0A5N6M706_9ASTR (RECA_2 domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M706_9ASTR)

HSP 1 Score: 59.3 bits (142), Expect = 1.310e-6
Identity = 54/207 (26.09%), Postives = 94/207 (45.41%), Query Frame = 0
Query:   41 ICSGSATFDA--RARLESRTVVQMSAASRGGKTMMCVRLAATVLRGGGSVVWVDSGAGV--WQVSAVVGRLASVARLSVVCVSSACDALRELE-----------RLVRHLQLHALDVAAPKPRLLVFDSPAALLAPVLGLRASSAYSGHTVMHQIAAAVNRFVLLSDATALLTNRVV---GVATRPALGNAWSAFVDVHLLLQRLHS 229
            + +G  +FD   +  L    V ++   S  GKT +C ++A+ V    GSVV++DSG      ++  +V R++      V  +     A+R +E            ++  L  +    A  K R+++ DS A+L+AP+LG    S   GH +M  +   + +     +   ++TN +V   G   +PALG +W     V L   R H+
Sbjct:   89 LSTGCKSFDVLLQGGLREGHVTELVGPSSSGKTQLCFQVASNVAMKLGSVVYIDSGNSFSPTRIKQIVSRISGSVETQVSGILQ--QAMRNIECHAVFDIYALLNVLHQLNSNLESQAGYKVRMIIIDSVASLIAPILG---GSNAQGHALMSSVGYLLKKLADRHNIAVVVTNHMVSGEGGILKPALGESWKNIPHVRLQFSREHA 290          
The following BLAST results are available for this feature:
BLAST of Gchil1728.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IW10_9FLOR1.910e-5045.78DNA repair protein RAD51-like n=1 Tax=Gracilariops... [more]
R7Q8Q8_CHOCR2.690e-1434.22RECA_2 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A5N6M706_9ASTR1.310e-626.09RECA_2 domain-containing protein n=1 Tax=Mikania m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 31..263
e-value: 1.3E-18
score: 69.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 40..257
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR46457DNA REPAIR PROTEIN RAD51 HOMOLOG 4coord: 58..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..264

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1996520..1997314 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1728.t1Gchil1728.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 1996520..1997314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1728.t1 ID=Gchil1728.t1|Name=Gchil1728.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MEELLLLAASNKAKAQEAATRASPAPPPPSCRSSSSPTSTICSGSATFDA
RARLESRTVVQMSAASRGGKTMMCVRLAATVLRGGGSVVWVDSGAGVWQV
SAVVGRLASVARLSVVCVSSACDALRELERLVRHLQLHALDVAAPKPRLL
VFDSPAALLAPVLGLRASSAYSGHTVMHQIAAAVNRFVLLSDATALLTNR
VVGVATRPALGNAWSAFVDVHLLLQRLHSDHNGLHIRVVATSKRAPTCNF
SLLITDTAIADAPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase