Gchil1728.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1728.t1
Unique NameGchil1728.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1996520..1997314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10015220
Preferred nameRAD51D
PFAMsRad51
Max annot lvl2759|Eukaryota
KEGG koko:K10871
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008092,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0015630,GO:0015631,GO:0016043,GO:0016444,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032200,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0036297,GO:0042148,GO:0042592,GO:0042623,GO:0043015,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0048518,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080134,GO:0090304,GO:0090735,GO:0097159,GO:0098687,GO:0140013,GO:0140097,GO:1900424,GO:1900426,GO:1901360,GO:1901363,GO:1903046
Evalue8.94e-10
EggNOG OGsCOG0468@1|root,KOG1433@2759|Eukaryota,38A8Z@33090|Viridiplantae,3GY64@35493|Streptophyta,4JVKK@91835|fabids
DescriptionRad51
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1728Gchil1728Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1996520..1997314 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1728.t1.start1Gchil1728.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1996520..1996522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1728.t1.CDS1Gchil1728.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1996520..1997314 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1728.t1.exon1Gchil1728.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1996520..1997314 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1728.t1.stop1Gchil1728.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1997312..1997314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1728.t1Gchil1728.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1996520..1997314 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1728.t1 ID=Gchil1728.t1|Name=Gchil1728.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=265bp
MEELLLLAASNKAKAQEAATRASPAPPPPSCRSSSSPTSTICSGSATFDA
RARLESRTVVQMSAASRGGKTMMCVRLAATVLRGGGSVVWVDSGAGVWQV
SAVVGRLASVARLSVVCVSSACDALRELERLVRHLQLHALDVAAPKPRLL
VFDSPAALLAPVLGLRASSAYSGHTVMHQIAAAVNRFVLLSDATALLTNR
VVGVATRPALGNAWSAFVDVHLLLQRLHSDHNGLHIRVVATSKRAPTCNF
SLLITDTAIADAPL*
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spliced messenger RNA

>Gchil1728.t1 ID=Gchil1728.t1|Name=Gchil1728.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004403_pilon:1996520..1997314+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGCTACTGCTACTGGCCGCATCGAACAAGGCAAAAGCGCAAGA
GGCGGCGACGCGCGCATCACCAGCGCCGCCGCCGCCGTCGTGCCGCTCGT
CTTCGTCACCAACAAGTACAATCTGCAGCGGCAGCGCGACGTTTGACGCG
CGCGCCCGCCTTGAATCGCGCACAGTGGTGCAAATGAGCGCGGCGTCGCG
CGGCGGCAAGACAATGATGTGCGTGCGATTGGCGGCGACGGTTCTGCGCG
GGGGGGGGAGCGTGGTGTGGGTGGACAGCGGCGCGGGCGTGTGGCAGGTG
AGCGCGGTGGTGGGACGACTGGCGAGTGTGGCGCGGCTGAGCGTGGTGTG
CGTGAGCAGCGCGTGCGATGCGCTCCGCGAGTTGGAGCGCTTGGTGCGTC
ACCTGCAGCTGCACGCGCTCGACGTGGCCGCGCCCAAGCCGCGCTTGTTG
GTGTTTGACTCGCCCGCCGCGCTGCTGGCGCCCGTGCTCGGGCTCAGGGC
GTCTTCCGCGTACAGCGGCCACACCGTCATGCACCAGATCGCCGCCGCCG
TCAACCGCTTCGTGTTGCTTTCCGACGCCACCGCGCTGCTCACCAACAGA
GTTGTGGGCGTGGCCACCCGCCCCGCGCTGGGAAACGCCTGGAGTGCTTT
TGTCGACGTGCATCTACTGTTGCAGCGCCTGCATTCCGATCACAACGGTT
TGCACATTCGTGTGGTTGCCACTTCCAAACGAGCCCCAACCTGCAACTTT
TCGCTCCTCATCACCGACACCGCCATCGCCGATGCGCCGCTTTGA
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protein sequence of Gchil1728.t1

>Gchil1728.t1 ID=Gchil1728.t1|Name=Gchil1728.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MEELLLLAASNKAKAQEAATRASPAPPPPSCRSSSSPTSTICSGSATFDA
RARLESRTVVQMSAASRGGKTMMCVRLAATVLRGGGSVVWVDSGAGVWQV
SAVVGRLASVARLSVVCVSSACDALRELERLVRHLQLHALDVAAPKPRLL
VFDSPAALLAPVLGLRASSAYSGHTVMHQIAAAVNRFVLLSDATALLTNR
VVGVATRPALGNAWSAFVDVHLLLQRLHSDHNGLHIRVVATSKRAPTCNF
SLLITDTAIADAPL*
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mRNA from alignment at tig00004403_pilon:1996520..1997314+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1728.t1 ID=Gchil1728.t1|Name=Gchil1728.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004403_pilon:1996520..1997314+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAGCTACTGCTACTGGCCGCATCGAACAAGGCAAAAGCGCAAGA
GGCGGCGACGCGCGCATCACCAGCGCCGCCGCCGCCGTCGTGCCGCTCGT
CTTCGTCACCAACAAGTACAATCTGCAGCGGCAGCGCGACGTTTGACGCG
CGCGCCCGCCTTGAATCGCGCACAGTGGTGCAAATGAGCGCGGCGTCGCG
CGGCGGCAAGACAATGATGTGCGTGCGATTGGCGGCGACGGTTCTGCGCG
GGGGGGGGAGCGTGGTGTGGGTGGACAGCGGCGCGGGCGTGTGGCAGGTG
AGCGCGGTGGTGGGACGACTGGCGAGTGTGGCGCGGCTGAGCGTGGTGTG
CGTGAGCAGCGCGTGCGATGCGCTCCGCGAGTTGGAGCGCTTGGTGCGTC
ACCTGCAGCTGCACGCGCTCGACGTGGCCGCGCCCAAGCCGCGCTTGTTG
GTGTTTGACTCGCCCGCCGCGCTGCTGGCGCCCGTGCTCGGGCTCAGGGC
GTCTTCCGCGTACAGCGGCCACACCGTCATGCACCAGATCGCCGCCGCCG
TCAACCGCTTCGTGTTGCTTTCCGACGCCACCGCGCTGCTCACCAACAGA
GTTGTGGGCGTGGCCACCCGCCCCGCGCTGGGAAACGCCTGGAGTGCTTT
TGTCGACGTGCATCTACTGTTGCAGCGCCTGCATTCCGATCACAACGGTT
TGCACATTCGTGTGGTTGCCACTTCCAAACGAGCCCCAACCTGCAACTTT
TCGCTCCTCATCACCGACACCGCCATCGCCGATGCGCCGCTTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1996520..1997314+

>Gchil1728.t1 ID=Gchil1728.t1|Name=Gchil1728.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00004403_pilon:1996520..1997314+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAGCTACTGCTACTGGCCGCATCGAACAAGGCAAAAGCGCAAGA
GGCGGCGACGCGCGCATCACCAGCGCCGCCGCCGCCGTCGTGCCGCTCGT
CTTCGTCACCAACAAGTACAATCTGCAGCGGCAGCGCGACGTTTGACGCG
CGCGCCCGCCTTGAATCGCGCACAGTGGTGCAAATGAGCGCGGCGTCGCG
CGGCGGCAAGACAATGATGTGCGTGCGATTGGCGGCGACGGTTCTGCGCG
GGGGGGGGAGCGTGGTGTGGGTGGACAGCGGCGCGGGCGTGTGGCAGGTG
AGCGCGGTGGTGGGACGACTGGCGAGTGTGGCGCGGCTGAGCGTGGTGTG
CGTGAGCAGCGCGTGCGATGCGCTCCGCGAGTTGGAGCGCTTGGTGCGTC
ACCTGCAGCTGCACGCGCTCGACGTGGCCGCGCCCAAGCCGCGCTTGTTG
GTGTTTGACTCGCCCGCCGCGCTGCTGGCGCCCGTGCTCGGGCTCAGGGC
GTCTTCCGCGTACAGCGGCCACACCGTCATGCACCAGATCGCCGCCGCCG
TCAACCGCTTCGTGTTGCTTTCCGACGCCACCGCGCTGCTCACCAACAGA
GTTGTGGGCGTGGCCACCCGCCCCGCGCTGGGAAACGCCTGGAGTGCTTT
TGTCGACGTGCATCTACTGTTGCAGCGCCTGCATTCCGATCACAACGGTT
TGCACATTCGTGTGGTTGCCACTTCCAAACGAGCCCCAACCTGCAACTTT
TCGCTCCTCATCACCGACACCGCCATCGCCGATGCGCCGCTTTGA
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